Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47112 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46994 * 60.00127 * 4 3 2 6 6 N 1.46500 * 109.46634 * 60.00206 * 5 4 3 7 7 C 1.46491 * 120.00533 * 0.77288 * 6 5 4 8 8 C 1.34778 * 119.99749 * 180.77396 * 6 5 4 9 9 O 1.21594 * 120.00029 * 359.72398 * 8 6 5 10 10 N 1.34777 * 120.00365 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00331 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47230 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.46833 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00201 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99574 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00210 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00156 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47175 * 89.99849 * 17 15 13 19 19 H 1.48499 * 109.47044 * 210.00151 * 17 15 13 20 20 H 1.48497 * 109.47144 * 330.00042 * 17 15 13 21 21 C 1.52995 * 109.47031 * 300.00216 * 5 4 3 22 22 C 1.52996 * 109.47698 * 59.99924 * 21 5 4 23 23 H 1.08994 * 109.47104 * 59.99189 * 1 2 3 24 24 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46602 * 299.99544 * 1 2 3 26 26 H 1.09000 * 109.47335 * 120.00146 * 2 1 3 27 27 H 1.09004 * 109.47015 * 60.00709 * 3 2 1 28 28 H 1.08994 * 109.47799 * 300.00386 * 3 2 1 29 29 H 1.09000 * 109.47335 * 300.00146 * 4 3 2 30 30 H 1.08998 * 109.47155 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46839 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47271 * 264.06916 * 7 6 5 33 33 H 1.09009 * 109.47126 * 24.06684 * 7 6 5 34 34 H 1.08993 * 109.47673 * 144.07162 * 7 6 5 35 35 H 0.96998 * 119.99594 * 359.97438 * 10 8 6 36 36 H 1.09004 * 109.46985 * 299.99799 * 11 10 8 37 37 H 1.09001 * 109.47499 * 59.99288 * 11 10 8 38 38 H 1.08998 * 109.46840 * 299.99750 * 12 11 10 39 39 H 1.09005 * 109.46645 * 59.99914 * 12 11 10 40 40 H 0.97001 * 120.00619 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46743 * 180.02562 * 21 5 4 42 42 H 1.09008 * 109.47055 * 299.99434 * 21 5 4 43 43 H 1.08998 * 109.47445 * 179.97438 * 22 21 5 44 44 H 1.09000 * 109.46650 * 59.99642 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7211 -1.2483 6 7 3.5927 1.4116 -2.4447 7 6 2.7645 2.6125 -2.3109 8 6 3.9058 0.9420 -3.6686 9 8 4.5974 -0.0519 -3.7798 10 7 3.4566 1.5770 -4.7693 11 6 3.7965 1.0662 -6.0996 12 6 3.1659 1.9631 -7.1668 13 6 3.5162 1.4380 -8.5353 14 1 4.1270 0.5528 -8.6339 15 6 3.0558 2.0870 -9.6612 16 7 3.3610 1.6285 -10.8555 17 14 1.9986 3.6176 -9.4905 18 1 2.8698 4.8197 -9.4568 19 1 1.0715 3.7104 -10.6468 20 1 1.2141 3.5395 -8.2321 21 6 3.5705 -0.7214 -1.2484 22 6 2.0405 -0.7214 -1.2490 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 0.8900 27 1 1.6768 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 3.9330 0.9288 0.8908 30 1 3.9334 2.4701 0.0011 31 1 5.1706 0.7215 -1.2481 32 1 1.7118 2.3371 -2.3757 33 1 2.9584 3.0820 -1.3464 34 1 3.0068 3.3121 -3.1108 35 1 2.9076 2.3717 -4.6807 36 1 4.8797 1.0624 -6.2215 37 1 3.4153 0.0507 -6.2073 38 1 2.0828 1.9665 -7.0448 39 1 3.5470 2.9787 -7.0592 40 1 3.0368 2.0849 -11.6477 41 1 3.9346 -1.2354 -2.1380 42 1 3.9335 -1.2352 -0.3582 43 1 1.6772 -1.7491 -1.2495 44 1 1.6776 -0.2077 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345815639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -54.780142 kcal Electronic energy + Delta-G solvation = -21553.844114 eV Core-core repulsion = 18505.172172 eV Total energy + Delta-G solvation = -3048.671941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78901 -39.52687 -36.63605 -35.94108 -34.78881 -32.90697 -32.05373 -31.33349 -28.24972 -27.09150 -25.93936 -23.61377 -22.93347 -22.32732 -21.13677 -20.29190 -18.98899 -18.69862 -17.29085 -17.07174 -16.36331 -16.17584 -15.58417 -15.42639 -15.33520 -14.96790 -14.89956 -14.57020 -14.13096 -14.00281 -13.61276 -13.37680 -13.17936 -13.03291 -12.88268 -12.72557 -12.38541 -12.32287 -12.15487 -12.14718 -11.83700 -11.75801 -11.52722 -11.28776 -11.12067 -11.06651 -10.78669 -10.62559 -10.10681 -9.39350 -8.29796 -6.37341 1.38975 1.42080 1.53357 1.71728 2.19669 2.37266 3.05103 3.07241 3.75935 3.84157 3.85732 4.16288 4.23398 4.31092 4.33948 4.43876 4.48545 4.50509 4.59976 4.61167 4.69435 4.74820 4.79718 4.85485 4.88078 5.01512 5.10773 5.14151 5.16357 5.21683 5.27777 5.31623 5.40636 5.41337 5.45288 5.48140 5.60815 5.68888 5.78073 6.01431 6.23285 6.69649 7.05563 7.27190 7.63469 8.87180 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028509 B = 0.004018 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.905801 B = 6966.927866 C = 7226.187210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.115 4.115 5 C 0.165 3.835 6 N -0.619 5.619 7 C 0.061 3.939 8 C 0.695 3.305 9 O -0.635 6.635 10 N -0.734 5.734 11 C 0.166 3.834 12 C -0.009 4.009 13 C -0.540 4.540 14 H 0.027 0.973 15 C 0.005 3.995 16 N -0.951 5.951 17 Si 0.960 3.040 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.237 1.237 21 C -0.136 4.136 22 C -0.104 4.104 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.407 0.593 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.268 0.732 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 5.077 28.135 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.176 4.176 4 C -0.153 4.153 5 C 0.062 3.938 6 N -0.356 5.356 7 C -0.081 4.081 8 C 0.397 3.603 9 O -0.517 6.517 10 N -0.391 5.391 11 C 0.041 3.959 12 C -0.047 4.047 13 C -0.578 4.578 14 H 0.046 0.954 15 C -0.192 4.192 16 N -0.591 5.591 17 Si 0.782 3.218 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.160 1.160 21 C -0.175 4.175 22 C -0.142 4.142 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.138 4.397 27.893 28.896 hybrid contribution -0.181 0.184 -1.003 1.036 sum -6.319 4.581 26.889 27.999 Atomic orbital electron populations 1.21804 0.94910 1.01537 1.01987 1.21095 0.95616 0.96603 0.97059 1.22257 0.94439 0.96504 1.04425 1.21814 0.96794 1.01241 0.95432 1.20935 0.97088 0.91890 0.83908 1.47086 1.55176 1.30089 1.03243 1.22380 0.94629 0.86088 1.04983 1.16154 0.80234 0.82602 0.81337 1.90836 1.45269 1.29200 1.86422 1.45286 1.56848 1.32326 1.04625 1.20833 0.98355 0.96926 0.79801 1.19621 0.97029 0.95918 0.92138 1.21245 1.32905 1.12518 0.91181 0.95438 1.26086 0.97340 1.01494 0.94317 1.70076 1.47459 1.42725 0.98840 0.85523 0.78822 0.78369 0.79065 1.18861 1.21166 1.16008 1.21918 0.96595 0.96912 1.02064 1.21441 0.94669 0.99756 0.98313 0.93335 0.93290 0.91343 0.90793 0.89897 0.89496 0.89020 0.89568 0.92763 0.91270 0.86901 0.91506 0.75594 0.94321 0.94455 0.94606 0.94659 0.92292 0.93650 0.90098 0.93122 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.09 -1.23 2.72 -10.79 -0.03 -1.26 16 3 C -0.14 -1.57 4.54 30.59 0.14 -1.43 16 4 C -0.12 -1.42 4.91 30.60 0.15 -1.27 16 5 C 0.16 3.56 2.94 44.99 0.13 3.69 16 6 N -0.62 -15.04 2.25 -840.62 -1.89 -16.94 16 7 C 0.06 0.93 7.91 127.77 1.01 1.94 16 8 C 0.70 24.29 7.98 179.05 1.43 25.71 16 9 O -0.64 -28.04 14.40 -4.01 -0.06 -28.10 16 10 N -0.73 -25.07 5.42 -478.53 -2.59 -27.66 16 11 C 0.17 7.16 5.61 86.38 0.48 7.65 16 12 C -0.01 -0.42 4.16 29.85 0.12 -0.30 16 13 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 14 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 15 C 0.00 0.27 5.47 84.65 0.46 0.73 16 16 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 17 Si 0.96 42.54 27.47 68.60 1.88 44.42 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 21 C -0.14 -3.29 5.23 30.59 0.16 -3.13 16 22 C -0.10 -2.23 5.05 30.59 0.15 -2.08 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.64 8.14 -2.38 -0.02 0.63 16 28 H 0.09 1.02 3.66 -2.39 -0.01 1.01 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.82 6.90 -2.39 -0.02 0.80 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 0.96 6.70 -2.38 -0.02 0.94 16 33 H 0.11 1.10 4.95 -2.38 -0.01 1.09 16 34 H 0.07 0.99 6.69 -2.39 -0.02 0.97 16 35 H 0.41 11.05 6.34 -92.71 -0.59 10.47 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 39 H 0.04 1.49 7.57 -2.38 -0.02 1.48 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.86 16 41 H 0.04 1.51 6.12 -2.38 -0.01 1.50 16 42 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 1.03 7.60 -2.39 -0.02 1.01 16 Total: -1.00 -74.64 329.22 3.10 -71.54 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.33 Total: 18.56 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 5.13 Total: -2.23 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -4.19 Total: -104.20 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.42 kcal Total: -74.64 3.10 -71.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.760 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds