Wall clock time and date at job start Mon Mar 30 2020 01:34:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.47112 * 2 1
4 4 C 1.53001 * 109.47112 * 179.97438 * 3 2 1
5 5 C 1.53005 * 109.46994 * 60.00127 * 4 3 2
6 6 N 1.46500 * 109.46634 * 60.00206 * 5 4 3
7 7 C 1.46491 * 120.00533 * 0.77288 * 6 5 4
8 8 C 1.34778 * 119.99749 * 180.77396 * 6 5 4
9 9 O 1.21594 * 120.00029 * 359.72398 * 8 6 5
10 10 N 1.34777 * 120.00365 * 179.97438 * 8 6 5
11 11 C 1.46496 * 120.00331 * 180.02562 * 10 8 6
12 12 C 1.53002 * 109.47230 * 179.97438 * 11 10 8
13 13 C 1.50702 * 109.46833 * 179.97438 * 12 11 10
14 14 H 1.07997 * 120.00201 * 0.02562 * 13 12 11
15 15 C 1.37876 * 119.99574 * 179.97438 * 13 12 11
16 16 N 1.31511 * 120.00210 * 180.02562 * 15 13 12
17 17 Si 1.86808 * 120.00156 * 0.02562 * 15 13 12
18 18 H 1.48496 * 109.47175 * 89.99849 * 17 15 13
19 19 H 1.48499 * 109.47044 * 210.00151 * 17 15 13
20 20 H 1.48497 * 109.47144 * 330.00042 * 17 15 13
21 21 C 1.52995 * 109.47031 * 300.00216 * 5 4 3
22 22 C 1.52996 * 109.47698 * 59.99924 * 21 5 4
23 23 H 1.08994 * 109.47104 * 59.99189 * 1 2 3
24 24 H 1.08998 * 109.47155 * 179.97438 * 1 2 3
25 25 H 1.09004 * 109.46602 * 299.99544 * 1 2 3
26 26 H 1.09000 * 109.47335 * 120.00146 * 2 1 3
27 27 H 1.09004 * 109.47015 * 60.00709 * 3 2 1
28 28 H 1.08994 * 109.47799 * 300.00386 * 3 2 1
29 29 H 1.09000 * 109.47335 * 300.00146 * 4 3 2
30 30 H 1.08998 * 109.47155 * 180.02562 * 4 3 2
31 31 H 1.09002 * 109.46839 * 179.97438 * 5 4 3
32 32 H 1.09004 * 109.47271 * 264.06916 * 7 6 5
33 33 H 1.09009 * 109.47126 * 24.06684 * 7 6 5
34 34 H 1.08993 * 109.47673 * 144.07162 * 7 6 5
35 35 H 0.96998 * 119.99594 * 359.97438 * 10 8 6
36 36 H 1.09004 * 109.46985 * 299.99799 * 11 10 8
37 37 H 1.09001 * 109.47499 * 59.99288 * 11 10 8
38 38 H 1.08998 * 109.46840 * 299.99750 * 12 11 10
39 39 H 1.09005 * 109.46645 * 59.99914 * 12 11 10
40 40 H 0.97001 * 120.00619 * 179.97438 * 16 15 13
41 41 H 1.09007 * 109.46743 * 180.02562 * 21 5 4
42 42 H 1.09008 * 109.47055 * 299.99434 * 21 5 4
43 43 H 1.08998 * 109.47445 * 179.97438 * 22 21 5
44 44 H 1.09000 * 109.46650 * 59.99642 * 22 21 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 6 4.0805 0.7211 -1.2483
6 7 3.5927 1.4116 -2.4447
7 6 2.7645 2.6125 -2.3109
8 6 3.9058 0.9420 -3.6686
9 8 4.5974 -0.0519 -3.7798
10 7 3.4566 1.5770 -4.7693
11 6 3.7965 1.0662 -6.0996
12 6 3.1659 1.9631 -7.1668
13 6 3.5162 1.4380 -8.5353
14 1 4.1270 0.5528 -8.6339
15 6 3.0558 2.0870 -9.6612
16 7 3.3610 1.6285 -10.8555
17 14 1.9986 3.6176 -9.4905
18 1 2.8698 4.8197 -9.4568
19 1 1.0715 3.7104 -10.6468
20 1 1.2141 3.5395 -8.2321
21 6 3.5705 -0.7214 -1.2484
22 6 2.0405 -0.7214 -1.2490
23 1 -0.3633 0.5139 -0.8899
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8901
26 1 1.8934 -0.5138 0.8900
27 1 1.6768 1.9563 0.8901
28 1 1.6767 1.9564 -0.8899
29 1 3.9330 0.9288 0.8908
30 1 3.9334 2.4701 0.0011
31 1 5.1706 0.7215 -1.2481
32 1 1.7118 2.3371 -2.3757
33 1 2.9584 3.0820 -1.3464
34 1 3.0068 3.3121 -3.1108
35 1 2.9076 2.3717 -4.6807
36 1 4.8797 1.0624 -6.2215
37 1 3.4153 0.0507 -6.2073
38 1 2.0828 1.9665 -7.0448
39 1 3.5470 2.9787 -7.0592
40 1 3.0368 2.0849 -11.6477
41 1 3.9346 -1.2354 -2.1380
42 1 3.9335 -1.2352 -0.3582
43 1 1.6772 -1.7491 -1.2495
44 1 1.6776 -0.2077 -2.1392
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000345815639.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:34:23
Heat of formation + Delta-G solvation = -54.780142 kcal
Electronic energy + Delta-G solvation = -21553.844114 eV
Core-core repulsion = 18505.172172 eV
Total energy + Delta-G solvation = -3048.671941 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.78901 -39.52687 -36.63605 -35.94108 -34.78881 -32.90697 -32.05373 -31.33349
-28.24972 -27.09150 -25.93936 -23.61377 -22.93347 -22.32732 -21.13677 -20.29190
-18.98899 -18.69862 -17.29085 -17.07174 -16.36331 -16.17584 -15.58417 -15.42639
-15.33520 -14.96790 -14.89956 -14.57020 -14.13096 -14.00281 -13.61276 -13.37680
-13.17936 -13.03291 -12.88268 -12.72557 -12.38541 -12.32287 -12.15487 -12.14718
-11.83700 -11.75801 -11.52722 -11.28776 -11.12067 -11.06651 -10.78669 -10.62559
-10.10681 -9.39350 -8.29796 -6.37341 1.38975 1.42080 1.53357 1.71728
2.19669 2.37266 3.05103 3.07241 3.75935 3.84157 3.85732 4.16288
4.23398 4.31092 4.33948 4.43876 4.48545 4.50509 4.59976 4.61167
4.69435 4.74820 4.79718 4.85485 4.88078 5.01512 5.10773 5.14151
5.16357 5.21683 5.27777 5.31623 5.40636 5.41337 5.45288 5.48140
5.60815 5.68888 5.78073 6.01431 6.23285 6.69649 7.05563 7.27190
7.63469 8.87180
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.028509 B = 0.004018 C = 0.003874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 981.905801 B = 6966.927866 C = 7226.187210
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.085 4.085
3 C -0.140 4.140
4 C -0.115 4.115
5 C 0.165 3.835
6 N -0.619 5.619
7 C 0.061 3.939
8 C 0.695 3.305
9 O -0.635 6.635
10 N -0.734 5.734
11 C 0.166 3.834
12 C -0.009 4.009
13 C -0.540 4.540
14 H 0.027 0.973
15 C 0.005 3.995
16 N -0.951 5.951
17 Si 0.960 3.040
18 H -0.264 1.264
19 H -0.286 1.286
20 H -0.237 1.237
21 C -0.136 4.136
22 C -0.104 4.104
23 H 0.047 0.953
24 H 0.048 0.952
25 H 0.068 0.932
26 H 0.074 0.926
27 H 0.082 0.918
28 H 0.087 0.913
29 H 0.091 0.909
30 H 0.086 0.914
31 H 0.054 0.946
32 H 0.069 0.931
33 H 0.113 0.887
34 H 0.066 0.934
35 H 0.407 0.593
36 H 0.038 0.962
37 H 0.037 0.963
38 H 0.036 0.964
39 H 0.035 0.965
40 H 0.268 0.732
41 H 0.045 0.955
42 H 0.080 0.920
43 H 0.050 0.950
44 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.611 5.077 28.135 29.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.104 4.104
3 C -0.176 4.176
4 C -0.153 4.153
5 C 0.062 3.938
6 N -0.356 5.356
7 C -0.081 4.081
8 C 0.397 3.603
9 O -0.517 6.517
10 N -0.391 5.391
11 C 0.041 3.959
12 C -0.047 4.047
13 C -0.578 4.578
14 H 0.046 0.954
15 C -0.192 4.192
16 N -0.591 5.591
17 Si 0.782 3.218
18 H -0.189 1.189
19 H -0.212 1.212
20 H -0.160 1.160
21 C -0.175 4.175
22 C -0.142 4.142
23 H 0.067 0.933
24 H 0.067 0.933
25 H 0.087 0.913
26 H 0.092 0.908
27 H 0.101 0.899
28 H 0.105 0.895
29 H 0.110 0.890
30 H 0.104 0.896
31 H 0.072 0.928
32 H 0.087 0.913
33 H 0.131 0.869
34 H 0.085 0.915
35 H 0.244 0.756
36 H 0.057 0.943
37 H 0.055 0.945
38 H 0.054 0.946
39 H 0.053 0.947
40 H 0.077 0.923
41 H 0.063 0.937
42 H 0.099 0.901
43 H 0.069 0.931
44 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -6.138 4.397 27.893 28.896
hybrid contribution -0.181 0.184 -1.003 1.036
sum -6.319 4.581 26.889 27.999
Atomic orbital electron populations
1.21804 0.94910 1.01537 1.01987 1.21095 0.95616 0.96603 0.97059
1.22257 0.94439 0.96504 1.04425 1.21814 0.96794 1.01241 0.95432
1.20935 0.97088 0.91890 0.83908 1.47086 1.55176 1.30089 1.03243
1.22380 0.94629 0.86088 1.04983 1.16154 0.80234 0.82602 0.81337
1.90836 1.45269 1.29200 1.86422 1.45286 1.56848 1.32326 1.04625
1.20833 0.98355 0.96926 0.79801 1.19621 0.97029 0.95918 0.92138
1.21245 1.32905 1.12518 0.91181 0.95438 1.26086 0.97340 1.01494
0.94317 1.70076 1.47459 1.42725 0.98840 0.85523 0.78822 0.78369
0.79065 1.18861 1.21166 1.16008 1.21918 0.96595 0.96912 1.02064
1.21441 0.94669 0.99756 0.98313 0.93335 0.93290 0.91343 0.90793
0.89897 0.89496 0.89020 0.89568 0.92763 0.91270 0.86901 0.91506
0.75594 0.94321 0.94455 0.94606 0.94659 0.92292 0.93650 0.90098
0.93122 0.94141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16
2 C -0.09 -1.23 2.72 -10.79 -0.03 -1.26 16
3 C -0.14 -1.57 4.54 30.59 0.14 -1.43 16
4 C -0.12 -1.42 4.91 30.60 0.15 -1.27 16
5 C 0.16 3.56 2.94 44.99 0.13 3.69 16
6 N -0.62 -15.04 2.25 -840.62 -1.89 -16.94 16
7 C 0.06 0.93 7.91 127.77 1.01 1.94 16
8 C 0.70 24.29 7.98 179.05 1.43 25.71 16
9 O -0.64 -28.04 14.40 -4.01 -0.06 -28.10 16
10 N -0.73 -25.07 5.42 -478.53 -2.59 -27.66 16
11 C 0.17 7.16 5.61 86.38 0.48 7.65 16
12 C -0.01 -0.42 4.16 29.85 0.12 -0.30 16
13 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16
14 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16
15 C 0.00 0.27 5.47 84.65 0.46 0.73 16
16 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16
17 Si 0.96 42.54 27.47 68.60 1.88 44.42 16
18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16
19 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16
20 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16
21 C -0.14 -3.29 5.23 30.59 0.16 -3.13 16
22 C -0.10 -2.23 5.05 30.59 0.15 -2.08 16
23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
25 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16
26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
27 H 0.08 0.64 8.14 -2.38 -0.02 0.63 16
28 H 0.09 1.02 3.66 -2.39 -0.01 1.01 16
29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
30 H 0.09 0.82 6.90 -2.39 -0.02 0.80 16
31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
32 H 0.07 0.96 6.70 -2.38 -0.02 0.94 16
33 H 0.11 1.10 4.95 -2.38 -0.01 1.09 16
34 H 0.07 0.99 6.69 -2.39 -0.02 0.97 16
35 H 0.41 11.05 6.34 -92.71 -0.59 10.47 16
36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
38 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16
39 H 0.04 1.49 7.57 -2.38 -0.02 1.48 16
40 H 0.27 15.64 8.31 -92.71 -0.77 14.86 16
41 H 0.04 1.51 6.12 -2.38 -0.01 1.50 16
42 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16
43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
44 H 0.04 1.03 7.60 -2.39 -0.02 1.01 16
Total: -1.00 -74.64 329.22 3.10 -71.54
By element:
Atomic # 1 Polarization: 18.22 SS G_CDS: 0.33 Total: 18.56 kcal
Atomic # 6 Polarization: -7.35 SS G_CDS: 5.13 Total: -2.23 kcal
Atomic # 7 Polarization: -100.01 SS G_CDS: -4.19 Total: -104.20 kcal
Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.10 kcal
Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.42 kcal
Total: -74.64 3.10 -71.54 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345815639.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.760 kcal
(2) G-P(sol) polarization free energy of solvation -74.641 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.780 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds