Wall clock time and date at job start Mon Mar 30 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.47121 * 2 1 4 4 C 1.42898 * 113.99693 * 180.02562 * 3 2 1 5 5 C 1.50710 * 109.46897 * 179.97438 * 4 3 2 6 6 N 1.30290 * 126.34827 * 270.04144 * 5 4 3 7 7 N 1.28530 * 110.05234 * 179.69164 * 6 5 4 8 8 C 1.31220 * 109.85739 * 0.45122 * 7 6 5 9 9 N 1.38573 * 126.46742 * 179.81955 * 8 7 6 10 10 C 1.46906 * 110.99827 * 123.64439 * 9 8 7 11 11 C 1.46902 * 111.00412 * 359.69429 * 9 8 7 12 12 H 1.08998 * 109.47116 * 59.99505 * 11 9 8 13 13 C 1.53002 * 109.46789 * 299.99447 * 11 9 8 14 14 C 1.50702 * 109.47561 * 180.02562 * 11 9 8 15 15 H 1.08004 * 119.99412 * 359.97438 * 14 11 9 16 16 C 1.37872 * 120.00353 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99829 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00236 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46619 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47066 * 119.99664 * 18 16 14 21 21 H 1.48497 * 109.46928 * 240.00110 * 18 16 14 22 22 N 1.36447 * 107.05744 * 359.56179 * 8 7 6 23 23 C 1.46495 * 127.13707 * 180.28321 * 22 8 7 24 24 H 1.08995 * 109.47069 * 300.00438 * 1 2 3 25 25 H 1.09006 * 109.46723 * 60.00096 * 1 2 3 26 26 H 1.08993 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47069 * 239.99562 * 2 1 3 28 28 H 1.08997 * 109.46944 * 119.99350 * 2 1 3 29 29 H 1.08998 * 109.47248 * 59.99683 * 4 3 2 30 30 H 1.08995 * 109.47153 * 299.99318 * 4 3 2 31 31 H 1.09001 * 109.46544 * 59.99935 * 10 9 8 32 32 H 1.09001 * 109.47272 * 179.97438 * 10 9 8 33 33 H 1.09000 * 109.47033 * 299.99991 * 10 9 8 34 34 H 1.08999 * 109.47254 * 179.97438 * 13 11 9 35 35 H 1.08993 * 109.47392 * 300.00418 * 13 11 9 36 36 H 1.09005 * 109.46778 * 60.00269 * 13 11 9 37 37 H 0.96997 * 119.99699 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.47149 * 89.99841 * 23 22 8 39 39 H 1.09010 * 109.46925 * 209.99798 * 23 22 8 40 40 H 1.09003 * 109.47257 * 329.99594 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9162 -0.0012 6 7 4.0175 3.6622 -1.0509 7 7 4.3298 4.8558 -0.6907 8 6 4.3572 4.9334 0.6189 9 7 4.6573 6.0578 1.3713 10 6 3.5653 6.3758 2.3011 11 6 4.9621 7.2047 0.5054 12 1 4.0993 7.4248 -0.1232 13 6 6.1654 6.8707 -0.3786 14 6 5.2833 8.4058 1.3571 15 1 5.2626 8.3253 2.4339 16 6 5.6036 9.6074 0.7617 17 7 5.6293 9.7053 -0.5496 18 14 6.0010 11.0964 1.8174 19 1 5.9021 10.7263 3.2522 20 1 7.3796 11.5607 1.5193 21 1 5.0365 12.1856 1.5200 22 7 4.0289 3.6995 1.1000 23 6 3.9223 3.2975 2.5046 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8333 0.9766 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 3.4071 5.5351 2.9767 32 1 3.8269 7.2620 2.8794 33 1 2.6519 6.5659 1.7375 34 1 6.3913 7.7215 -1.0214 35 1 7.0281 6.6505 0.2500 36 1 5.9335 6.0018 -0.9946 37 1 5.8549 10.5505 -0.9685 38 1 2.9028 3.4621 2.8533 39 1 4.1728 2.2408 2.6001 40 1 4.6120 3.8901 3.1056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349761292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:44 Heat of formation + Delta-G solvation = 57.328654 kcal Electronic energy + Delta-G solvation = -21113.457042 eV Core-core repulsion = 17966.106160 eV Total energy + Delta-G solvation = -3147.350883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48610 -38.20565 -37.10632 -34.70406 -32.89290 -31.94784 -29.92463 -29.22752 -27.65984 -26.45973 -25.05696 -24.22886 -23.01976 -21.85507 -20.52349 -19.53136 -17.07276 -16.83708 -16.33674 -16.09275 -15.79252 -15.32028 -14.99568 -14.54544 -13.96395 -13.65918 -13.44312 -13.15351 -12.92912 -12.74191 -12.51613 -12.32865 -11.85315 -11.66758 -11.43841 -11.19578 -11.02140 -10.86146 -10.52739 -10.42055 -10.18853 -10.04555 -9.92566 -9.80969 -9.55629 -9.38425 -8.63105 -8.44927 -7.38015 -6.03691 -4.11914 2.06649 2.66724 3.22420 3.27984 3.35612 3.38359 3.80543 4.32212 4.54294 4.62320 4.73211 4.76314 4.84300 4.99273 5.10859 5.13783 5.19665 5.27837 5.39587 5.44657 5.62963 5.65527 5.81828 5.88065 6.00789 6.14705 6.34274 6.46941 6.84703 6.95724 7.02891 7.20096 7.39296 7.46933 7.70859 7.74567 7.98971 8.29934 8.44837 8.89636 9.35442 9.52708 11.02419 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.004159 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.495673 B = 6730.800529 C = 6988.315885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.383 6.383 4 C 0.165 3.835 5 C 0.137 3.863 6 N -0.263 5.263 7 N -0.314 5.314 8 C 0.393 3.607 9 N -0.454 5.454 10 C 0.032 3.968 11 C 0.230 3.770 12 H 0.022 0.978 13 C -0.144 4.144 14 C -0.519 4.519 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.882 5.882 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 N -0.486 5.486 23 C 0.081 3.919 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 -18.025 6.353 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.302 6.302 4 C 0.086 3.914 5 C -0.129 4.129 6 N -0.105 5.105 7 N -0.159 5.159 8 C 0.037 3.963 9 N -0.178 5.178 10 C -0.115 4.115 11 C 0.126 3.874 12 H 0.039 0.961 13 C -0.202 4.202 14 C -0.557 4.557 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 N -0.184 5.184 23 C -0.062 4.062 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.053 -17.385 5.077 19.096 hybrid contribution -0.199 0.403 1.625 1.687 sum -6.253 -16.982 6.703 19.298 Atomic orbital electron populations 1.21740 0.93627 1.02139 1.03370 1.22478 0.95754 0.83481 1.00179 1.88013 1.20089 1.26617 1.95442 1.20274 0.82071 0.87159 1.01869 1.23794 1.09826 0.96160 0.83169 1.73930 1.13936 0.98383 1.24276 1.74885 1.23276 1.10809 1.06974 1.23313 0.96816 0.86230 0.89896 1.59072 1.35843 1.03709 1.19143 1.22449 0.91325 1.02174 0.95530 1.19391 0.95507 0.82945 0.89565 0.96054 1.21978 0.96986 1.01798 0.99443 1.21101 1.48236 0.93341 0.93037 0.91673 1.24905 0.95176 0.98768 0.95035 1.69941 1.47873 1.25700 1.08442 0.86415 0.78023 0.82425 0.80358 1.19750 1.20913 1.21012 1.46010 1.54982 1.09344 1.08094 1.22011 1.03549 1.01836 0.78840 0.91919 0.91633 0.91071 0.93001 0.93386 0.89894 0.91936 0.93111 0.88250 0.95141 0.89442 0.95796 0.93614 0.92762 0.90637 0.89995 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.38 -4.95 10.33 -35.23 -0.36 -5.32 16 4 C 0.17 2.03 6.31 36.01 0.23 2.26 16 5 C 0.14 2.40 7.70 -154.01 -1.19 1.22 16 6 N -0.26 -5.71 12.18 32.99 0.40 -5.31 16 7 N -0.31 -7.54 9.01 30.31 0.27 -7.27 16 8 C 0.39 8.51 6.75 -318.89 -2.15 6.35 16 9 N -0.45 -10.11 4.69 -176.08 -0.83 -10.93 16 10 C 0.03 0.61 9.08 60.07 0.55 1.15 16 11 C 0.23 6.03 1.73 -68.86 -0.12 5.91 16 12 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 13 C -0.14 -3.84 8.77 37.16 0.33 -3.51 16 14 C -0.52 -14.01 7.88 -34.44 -0.27 -14.28 16 15 H 0.07 1.69 6.41 -52.48 -0.34 1.36 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -25.42 11.32 55.43 0.63 -24.80 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 N -0.49 -8.40 3.21 -121.46 -0.39 -8.79 16 23 C 0.08 0.94 9.33 59.84 0.56 1.50 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.57 7.27 -51.93 -0.38 0.20 16 31 H 0.05 0.75 5.40 -51.93 -0.28 0.47 16 32 H 0.10 1.89 6.10 -51.93 -0.32 1.58 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 1.20 5.44 -51.93 -0.28 0.92 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 39 H 0.08 0.70 7.25 -51.92 -0.38 0.32 16 40 H 0.09 1.09 7.57 -51.93 -0.39 0.70 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -33.49 322.29 -8.00 -41.49 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.02 Total: -2.10 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.54 Total: 2.23 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.09 Total: -57.10 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.36 Total: -5.32 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.49 -8.00 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349761292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.821 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds