Wall clock time and date at job start Mon Mar 30 2020 00:35:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.42902 * 109.47121 * 2 1
4 4 C 1.42898 * 113.99693 * 180.02562 * 3 2 1
5 5 C 1.50710 * 109.46897 * 179.97438 * 4 3 2
6 6 N 1.30290 * 126.34827 * 270.04144 * 5 4 3
7 7 N 1.28530 * 110.05234 * 179.69164 * 6 5 4
8 8 C 1.31220 * 109.85739 * 0.45122 * 7 6 5
9 9 N 1.38573 * 126.46742 * 179.81955 * 8 7 6
10 10 C 1.46906 * 110.99827 * 123.64439 * 9 8 7
11 11 C 1.46902 * 111.00412 * 359.69429 * 9 8 7
12 12 H 1.08998 * 109.47116 * 59.99505 * 11 9 8
13 13 C 1.53002 * 109.46789 * 299.99447 * 11 9 8
14 14 C 1.50702 * 109.47561 * 180.02562 * 11 9 8
15 15 H 1.08004 * 119.99412 * 359.97438 * 14 11 9
16 16 C 1.37872 * 120.00353 * 179.97438 * 14 11 9
17 17 N 1.31516 * 119.99829 * 359.97438 * 16 14 11
18 18 Si 1.86802 * 120.00236 * 179.97438 * 16 14 11
19 19 H 1.48507 * 109.46619 * 359.97438 * 18 16 14
20 20 H 1.48493 * 109.47066 * 119.99664 * 18 16 14
21 21 H 1.48497 * 109.46928 * 240.00110 * 18 16 14
22 22 N 1.36447 * 107.05744 * 359.56179 * 8 7 6
23 23 C 1.46495 * 127.13707 * 180.28321 * 22 8 7
24 24 H 1.08995 * 109.47069 * 300.00438 * 1 2 3
25 25 H 1.09006 * 109.46723 * 60.00096 * 1 2 3
26 26 H 1.08993 * 109.47044 * 180.02562 * 1 2 3
27 27 H 1.08995 * 109.47069 * 239.99562 * 2 1 3
28 28 H 1.08997 * 109.46944 * 119.99350 * 2 1 3
29 29 H 1.08998 * 109.47248 * 59.99683 * 4 3 2
30 30 H 1.08995 * 109.47153 * 299.99318 * 4 3 2
31 31 H 1.09001 * 109.46544 * 59.99935 * 10 9 8
32 32 H 1.09001 * 109.47272 * 179.97438 * 10 9 8
33 33 H 1.09000 * 109.47033 * 299.99991 * 10 9 8
34 34 H 1.08999 * 109.47254 * 179.97438 * 13 11 9
35 35 H 1.08993 * 109.47392 * 300.00418 * 13 11 9
36 36 H 1.09005 * 109.46778 * 60.00269 * 13 11 9
37 37 H 0.96997 * 119.99699 * 180.02562 * 17 16 14
38 38 H 1.08998 * 109.47149 * 89.99841 * 23 22 8
39 39 H 1.09010 * 109.46925 * 209.99798 * 23 22 8
40 40 H 1.09003 * 109.47257 * 329.99594 * 23 22 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8195 2.9162 -0.0012
6 7 4.0175 3.6622 -1.0509
7 7 4.3298 4.8558 -0.6907
8 6 4.3572 4.9334 0.6189
9 7 4.6573 6.0578 1.3713
10 6 3.5653 6.3758 2.3011
11 6 4.9621 7.2047 0.5054
12 1 4.0993 7.4248 -0.1232
13 6 6.1654 6.8707 -0.3786
14 6 5.2833 8.4058 1.3571
15 1 5.2626 8.3253 2.4339
16 6 5.6036 9.6074 0.7617
17 7 5.6293 9.7053 -0.5496
18 14 6.0010 11.0964 1.8174
19 1 5.9021 10.7263 3.2522
20 1 7.3796 11.5607 1.5193
21 1 5.0365 12.1856 1.5200
22 7 4.0289 3.6995 1.1000
23 6 3.9223 3.2975 2.5046
24 1 -0.3633 0.5139 0.8899
25 1 -0.3633 0.5139 -0.8901
26 1 -0.3633 -1.0276 0.0005
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5137 0.8900
29 1 3.8333 0.9766 -0.8908
30 1 3.8340 0.9765 0.8892
31 1 3.4071 5.5351 2.9767
32 1 3.8269 7.2620 2.8794
33 1 2.6519 6.5659 1.7375
34 1 6.3913 7.7215 -1.0214
35 1 7.0281 6.6505 0.2500
36 1 5.9335 6.0018 -0.9946
37 1 5.8549 10.5505 -0.9685
38 1 2.9028 3.4621 2.8533
39 1 4.1728 2.2408 2.6001
40 1 4.6120 3.8901 3.1056
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000349761292.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:35:43
Heat of formation + Delta-G solvation = 35.502442 kcal
Electronic energy + Delta-G solvation = -21114.403498 eV
Core-core repulsion = 17966.106160 eV
Total energy + Delta-G solvation = -3148.297338 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-43.98324 -39.19936 -38.74971 -36.09693 -34.83650 -32.86236 -31.27027 -31.09362
-28.89520 -27.80799 -26.85312 -25.90785 -23.66190 -23.64797 -21.87484 -21.27494
-18.57222 -18.06620 -17.80295 -17.37919 -17.03911 -16.77864 -16.33304 -16.18456
-15.59492 -15.03982 -14.64318 -14.28801 -14.25067 -13.85891 -13.83399 -13.43087
-13.22845 -12.99005 -12.84950 -12.70314 -12.37410 -12.26643 -12.23632 -12.15114
-12.06349 -12.03049 -11.51022 -11.11965 -11.02508 -10.62642 -10.58922 -10.51560
-9.10588 -8.13040 -6.29364 0.69020 1.32378 1.45365 1.46262 1.58559
1.73938 2.41436 2.77379 3.00271 3.18101 3.51288 3.73808 3.88839
4.06290 4.18788 4.22416 4.33838 4.38415 4.44959 4.47456 4.55176
4.60090 4.72710 4.82651 4.87114 4.91568 4.96320 5.06542 5.14809
5.29011 5.29342 5.39852 5.52356 5.64856 5.92256 5.97441 6.15697
6.18014 6.54760 6.80634 7.39699 7.81276 8.94022
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.040019 B = 0.004159 C = 0.004006
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 699.495673 B = 6730.800529 C = 6988.315885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.051 3.949
3 O -0.413 6.413
4 C 0.166 3.834
5 C 0.162 3.838
6 N -0.315 5.315
7 N -0.365 5.365
8 C 0.371 3.629
9 N -0.454 5.454
10 C 0.034 3.966
11 C 0.242 3.758
12 H -0.027 1.027
13 C -0.128 4.128
14 C -0.529 4.529
15 H 0.077 0.923
16 C 0.011 3.989
17 N -0.919 5.919
18 Si 0.973 3.027
19 H -0.257 1.257
20 H -0.282 1.282
21 H -0.282 1.282
22 N -0.477 5.477
23 C 0.067 3.933
24 H 0.056 0.944
25 H 0.048 0.952
26 H 0.096 0.904
27 H 0.062 0.938
28 H 0.075 0.925
29 H 0.095 0.905
30 H 0.107 0.893
31 H 0.095 0.905
32 H 0.095 0.905
33 H 0.014 0.986
34 H 0.061 0.939
35 H 0.022 0.978
36 H 0.043 0.957
37 H 0.263 0.737
38 H 0.094 0.906
39 H 0.123 0.877
40 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.791 -20.242 9.193 23.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.024 4.024
3 O -0.332 6.332
4 C 0.088 3.912
5 C -0.107 4.107
6 N -0.155 5.155
7 N -0.210 5.210
8 C 0.013 3.987
9 N -0.177 5.177
10 C -0.113 4.113
11 C 0.136 3.864
12 H -0.009 1.009
13 C -0.187 4.187
14 C -0.567 4.567
15 H 0.095 0.905
16 C -0.189 4.189
17 N -0.558 5.558
18 Si 0.797 3.203
19 H -0.181 1.181
20 H -0.208 1.208
21 H -0.208 1.208
22 N -0.174 5.174
23 C -0.074 4.074
24 H 0.075 0.925
25 H 0.067 0.933
26 H 0.115 0.885
27 H 0.081 0.919
28 H 0.093 0.907
29 H 0.112 0.888
30 H 0.124 0.876
31 H 0.114 0.886
32 H 0.114 0.886
33 H 0.033 0.967
34 H 0.080 0.920
35 H 0.041 0.959
36 H 0.062 0.938
37 H 0.072 0.928
38 H 0.112 0.888
39 H 0.141 0.859
40 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -6.385 -19.649 7.949 22.137
hybrid contribution -0.206 0.889 0.734 1.171
sum -6.592 -18.760 8.683 21.697
Atomic orbital electron populations
1.21787 0.93399 1.03484 1.02267 1.22756 0.95951 0.81712 1.02004
1.87961 1.19982 1.29437 1.95802 1.20552 0.82481 0.83582 1.04589
1.24865 1.05938 0.97668 0.82213 1.73824 1.16852 0.98373 1.26486
1.74702 1.24722 1.12655 1.08964 1.23187 0.98332 0.87457 0.89696
1.59002 1.37518 1.02656 1.18546 1.22546 0.89607 1.03984 0.95154
1.18975 0.93153 0.84756 0.89495 1.00886 1.21777 0.97300 1.00495
0.99124 1.21412 1.47907 0.93765 0.93609 0.90533 1.25847 0.94889
1.01960 0.96195 1.70104 1.48798 1.26478 1.10422 0.85284 0.77501
0.78265 0.79215 1.18058 1.20813 1.20785 1.46262 1.53343 1.07506
1.10243 1.22512 1.04976 1.04413 0.75507 0.92460 0.93312 0.88505
0.91946 0.90675 0.88757 0.87564 0.88620 0.88619 0.96746 0.92021
0.95876 0.93844 0.92765 0.88750 0.85910 0.88373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16
2 C 0.05 0.71 6.66 71.98 0.48 1.19 16
3 O -0.41 -9.50 10.33 -148.98 -1.54 -11.04 16
4 C 0.17 3.53 6.31 71.24 0.45 3.98 16
5 C 0.16 5.44 7.70 137.64 1.06 6.50 16
6 N -0.31 -13.92 12.18 -49.53 -0.60 -14.53 16
7 N -0.37 -18.28 9.01 -58.01 -0.52 -18.80 16
8 C 0.37 16.21 6.75 260.12 1.76 17.97 16
9 N -0.45 -20.40 4.69 -710.98 -3.33 -23.73 16
10 C 0.03 1.24 9.08 127.69 1.16 2.40 16
11 C 0.24 13.22 1.73 44.17 0.08 13.29 16
12 H -0.03 -1.67 8.11 -2.39 -0.02 -1.69 16
13 C -0.13 -7.20 8.77 71.98 0.63 -6.57 16
14 C -0.53 -28.99 7.88 25.60 0.20 -28.79 16
15 H 0.08 3.94 6.41 -2.91 -0.02 3.92 16
16 C 0.01 0.58 5.30 84.65 0.45 1.03 16
17 N -0.92 -54.89 11.32 21.45 0.24 -54.64 16
18 Si 0.97 43.16 29.54 68.60 2.03 45.19 16
19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16
20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
22 N -0.48 -15.59 3.21 -538.18 -1.73 -17.31 16
23 C 0.07 1.28 9.33 127.77 1.19 2.47 16
24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
25 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16
26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16
27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
30 H 0.11 1.34 7.27 -2.39 -0.02 1.32 16
31 H 0.10 2.59 5.40 -2.39 -0.01 2.58 16
32 H 0.10 3.57 6.10 -2.39 -0.01 3.55 16
33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.06 3.73 6.07 -2.39 -0.01 3.72 16
35 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16
36 H 0.04 2.42 5.44 -2.38 -0.01 2.41 16
37 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16
38 H 0.09 1.51 7.85 -2.39 -0.02 1.50 16
39 H 0.12 1.39 7.25 -2.38 -0.02 1.37 16
40 H 0.10 1.88 7.57 -2.39 -0.02 1.86 16
Total: -1.00 -77.93 322.29 3.77 -74.16
By element:
Atomic # 1 Polarization: 7.45 SS G_CDS: 1.03 Total: 8.48 kcal
Atomic # 6 Polarization: 4.02 SS G_CDS: 8.19 Total: 12.22 kcal
Atomic # 7 Polarization: -123.07 SS G_CDS: -5.94 Total: -129.01 kcal
Atomic # 8 Polarization: -9.50 SS G_CDS: -1.54 Total: -11.04 kcal
Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal
Total: -77.93 3.77 -74.16 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349761292.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.664 kcal
(2) G-P(sol) polarization free energy of solvation -77.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.731 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds