Wall clock time and date at job start Mon Mar 30 2020 00:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.47121 * 2 1 4 4 C 1.42898 * 113.99693 * 180.02562 * 3 2 1 5 5 C 1.50710 * 109.46897 * 179.97438 * 4 3 2 6 6 N 1.30290 * 126.34827 * 270.04144 * 5 4 3 7 7 N 1.28530 * 110.05234 * 179.69164 * 6 5 4 8 8 C 1.31220 * 109.85739 * 0.45122 * 7 6 5 9 9 N 1.38573 * 126.46742 * 179.81955 * 8 7 6 10 10 C 1.46906 * 110.99827 * 123.64439 * 9 8 7 11 11 C 1.46902 * 111.00412 * 359.69429 * 9 8 7 12 12 H 1.08998 * 109.47116 * 59.99505 * 11 9 8 13 13 C 1.53002 * 109.46789 * 299.99447 * 11 9 8 14 14 C 1.50702 * 109.47561 * 180.02562 * 11 9 8 15 15 H 1.08004 * 119.99412 * 359.97438 * 14 11 9 16 16 C 1.37872 * 120.00353 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99829 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00236 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46619 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47066 * 119.99664 * 18 16 14 21 21 H 1.48497 * 109.46928 * 240.00110 * 18 16 14 22 22 N 1.36447 * 107.05744 * 359.56179 * 8 7 6 23 23 C 1.46495 * 127.13707 * 180.28321 * 22 8 7 24 24 H 1.08995 * 109.47069 * 300.00438 * 1 2 3 25 25 H 1.09006 * 109.46723 * 60.00096 * 1 2 3 26 26 H 1.08993 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47069 * 239.99562 * 2 1 3 28 28 H 1.08997 * 109.46944 * 119.99350 * 2 1 3 29 29 H 1.08998 * 109.47248 * 59.99683 * 4 3 2 30 30 H 1.08995 * 109.47153 * 299.99318 * 4 3 2 31 31 H 1.09001 * 109.46544 * 59.99935 * 10 9 8 32 32 H 1.09001 * 109.47272 * 179.97438 * 10 9 8 33 33 H 1.09000 * 109.47033 * 299.99991 * 10 9 8 34 34 H 1.08999 * 109.47254 * 179.97438 * 13 11 9 35 35 H 1.08993 * 109.47392 * 300.00418 * 13 11 9 36 36 H 1.09005 * 109.46778 * 60.00269 * 13 11 9 37 37 H 0.96997 * 119.99699 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.47149 * 89.99841 * 23 22 8 39 39 H 1.09010 * 109.46925 * 209.99798 * 23 22 8 40 40 H 1.09003 * 109.47257 * 329.99594 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9162 -0.0012 6 7 4.0175 3.6622 -1.0509 7 7 4.3298 4.8558 -0.6907 8 6 4.3572 4.9334 0.6189 9 7 4.6573 6.0578 1.3713 10 6 3.5653 6.3758 2.3011 11 6 4.9621 7.2047 0.5054 12 1 4.0993 7.4248 -0.1232 13 6 6.1654 6.8707 -0.3786 14 6 5.2833 8.4058 1.3571 15 1 5.2626 8.3253 2.4339 16 6 5.6036 9.6074 0.7617 17 7 5.6293 9.7053 -0.5496 18 14 6.0010 11.0964 1.8174 19 1 5.9021 10.7263 3.2522 20 1 7.3796 11.5607 1.5193 21 1 5.0365 12.1856 1.5200 22 7 4.0289 3.6995 1.1000 23 6 3.9223 3.2975 2.5046 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8333 0.9766 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 3.4071 5.5351 2.9767 32 1 3.8269 7.2620 2.8794 33 1 2.6519 6.5659 1.7375 34 1 6.3913 7.7215 -1.0214 35 1 7.0281 6.6505 0.2500 36 1 5.9335 6.0018 -0.9946 37 1 5.8549 10.5505 -0.9685 38 1 2.9028 3.4621 2.8533 39 1 4.1728 2.2408 2.6001 40 1 4.6120 3.8901 3.1056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349761292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:43 Heat of formation + Delta-G solvation = 35.502442 kcal Electronic energy + Delta-G solvation = -21114.403498 eV Core-core repulsion = 17966.106160 eV Total energy + Delta-G solvation = -3148.297338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.98324 -39.19936 -38.74971 -36.09693 -34.83650 -32.86236 -31.27027 -31.09362 -28.89520 -27.80799 -26.85312 -25.90785 -23.66190 -23.64797 -21.87484 -21.27494 -18.57222 -18.06620 -17.80295 -17.37919 -17.03911 -16.77864 -16.33304 -16.18456 -15.59492 -15.03982 -14.64318 -14.28801 -14.25067 -13.85891 -13.83399 -13.43087 -13.22845 -12.99005 -12.84950 -12.70314 -12.37410 -12.26643 -12.23632 -12.15114 -12.06349 -12.03049 -11.51022 -11.11965 -11.02508 -10.62642 -10.58922 -10.51560 -9.10588 -8.13040 -6.29364 0.69020 1.32378 1.45365 1.46262 1.58559 1.73938 2.41436 2.77379 3.00271 3.18101 3.51288 3.73808 3.88839 4.06290 4.18788 4.22416 4.33838 4.38415 4.44959 4.47456 4.55176 4.60090 4.72710 4.82651 4.87114 4.91568 4.96320 5.06542 5.14809 5.29011 5.29342 5.39852 5.52356 5.64856 5.92256 5.97441 6.15697 6.18014 6.54760 6.80634 7.39699 7.81276 8.94022 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.004159 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.495673 B = 6730.800529 C = 6988.315885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.413 6.413 4 C 0.166 3.834 5 C 0.162 3.838 6 N -0.315 5.315 7 N -0.365 5.365 8 C 0.371 3.629 9 N -0.454 5.454 10 C 0.034 3.966 11 C 0.242 3.758 12 H -0.027 1.027 13 C -0.128 4.128 14 C -0.529 4.529 15 H 0.077 0.923 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.973 3.027 19 H -0.257 1.257 20 H -0.282 1.282 21 H -0.282 1.282 22 N -0.477 5.477 23 C 0.067 3.933 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.014 0.986 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 -20.242 9.193 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.332 6.332 4 C 0.088 3.912 5 C -0.107 4.107 6 N -0.155 5.155 7 N -0.210 5.210 8 C 0.013 3.987 9 N -0.177 5.177 10 C -0.113 4.113 11 C 0.136 3.864 12 H -0.009 1.009 13 C -0.187 4.187 14 C -0.567 4.567 15 H 0.095 0.905 16 C -0.189 4.189 17 N -0.558 5.558 18 Si 0.797 3.203 19 H -0.181 1.181 20 H -0.208 1.208 21 H -0.208 1.208 22 N -0.174 5.174 23 C -0.074 4.074 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.385 -19.649 7.949 22.137 hybrid contribution -0.206 0.889 0.734 1.171 sum -6.592 -18.760 8.683 21.697 Atomic orbital electron populations 1.21787 0.93399 1.03484 1.02267 1.22756 0.95951 0.81712 1.02004 1.87961 1.19982 1.29437 1.95802 1.20552 0.82481 0.83582 1.04589 1.24865 1.05938 0.97668 0.82213 1.73824 1.16852 0.98373 1.26486 1.74702 1.24722 1.12655 1.08964 1.23187 0.98332 0.87457 0.89696 1.59002 1.37518 1.02656 1.18546 1.22546 0.89607 1.03984 0.95154 1.18975 0.93153 0.84756 0.89495 1.00886 1.21777 0.97300 1.00495 0.99124 1.21412 1.47907 0.93765 0.93609 0.90533 1.25847 0.94889 1.01960 0.96195 1.70104 1.48798 1.26478 1.10422 0.85284 0.77501 0.78265 0.79215 1.18058 1.20813 1.20785 1.46262 1.53343 1.07506 1.10243 1.22512 1.04976 1.04413 0.75507 0.92460 0.93312 0.88505 0.91946 0.90675 0.88757 0.87564 0.88620 0.88619 0.96746 0.92021 0.95876 0.93844 0.92765 0.88750 0.85910 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.41 -9.50 10.33 -148.98 -1.54 -11.04 16 4 C 0.17 3.53 6.31 71.24 0.45 3.98 16 5 C 0.16 5.44 7.70 137.64 1.06 6.50 16 6 N -0.31 -13.92 12.18 -49.53 -0.60 -14.53 16 7 N -0.37 -18.28 9.01 -58.01 -0.52 -18.80 16 8 C 0.37 16.21 6.75 260.12 1.76 17.97 16 9 N -0.45 -20.40 4.69 -710.98 -3.33 -23.73 16 10 C 0.03 1.24 9.08 127.69 1.16 2.40 16 11 C 0.24 13.22 1.73 44.17 0.08 13.29 16 12 H -0.03 -1.67 8.11 -2.39 -0.02 -1.69 16 13 C -0.13 -7.20 8.77 71.98 0.63 -6.57 16 14 C -0.53 -28.99 7.88 25.60 0.20 -28.79 16 15 H 0.08 3.94 6.41 -2.91 -0.02 3.92 16 16 C 0.01 0.58 5.30 84.65 0.45 1.03 16 17 N -0.92 -54.89 11.32 21.45 0.24 -54.64 16 18 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 N -0.48 -15.59 3.21 -538.18 -1.73 -17.31 16 23 C 0.07 1.28 9.33 127.77 1.19 2.47 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.34 7.27 -2.39 -0.02 1.32 16 31 H 0.10 2.59 5.40 -2.39 -0.01 2.58 16 32 H 0.10 3.57 6.10 -2.39 -0.01 3.55 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 3.73 6.07 -2.39 -0.01 3.72 16 35 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 2.42 5.44 -2.38 -0.01 2.41 16 37 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.09 1.51 7.85 -2.39 -0.02 1.50 16 39 H 0.12 1.39 7.25 -2.38 -0.02 1.37 16 40 H 0.10 1.88 7.57 -2.39 -0.02 1.86 16 Total: -1.00 -77.93 322.29 3.77 -74.16 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.03 Total: 8.48 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 8.19 Total: 12.22 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -5.94 Total: -129.01 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -1.54 Total: -11.04 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -77.93 3.77 -74.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349761292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.664 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds