Wall clock time and date at job start Mon Mar 30 2020 00:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47181 * 2 1 4 4 C 1.42906 * 113.99828 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46702 * 179.97438 * 4 3 2 6 6 N 1.30285 * 126.34608 * 269.68238 * 5 4 3 7 7 N 1.28530 * 110.05264 * 179.82493 * 6 5 4 8 8 C 1.31217 * 109.86028 * 0.45531 * 7 6 5 9 9 N 1.38581 * 126.47399 * 179.73043 * 8 7 6 10 10 C 1.46895 * 110.99679 * 236.04572 * 9 8 7 11 11 C 1.46897 * 110.99882 * 359.97438 * 9 8 7 12 12 H 1.08991 * 109.47746 * 300.00092 * 11 9 8 13 13 C 1.53005 * 109.47235 * 60.00339 * 11 9 8 14 14 C 1.50704 * 109.46913 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00104 * 359.97438 * 14 11 9 16 16 C 1.37881 * 120.00049 * 180.02562 * 14 11 9 17 17 N 1.31515 * 119.99751 * 0.02562 * 16 14 11 18 18 Si 1.86790 * 120.00084 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47377 * 60.00024 * 18 16 14 20 20 H 1.48501 * 109.47538 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47173 * 300.00075 * 18 16 14 22 22 N 1.36452 * 107.04978 * 359.72678 * 8 7 6 23 23 C 1.46504 * 127.13452 * 179.97438 * 22 8 7 24 24 H 1.08998 * 109.46780 * 60.00156 * 1 2 3 25 25 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47176 * 300.00297 * 1 2 3 27 27 H 1.09000 * 109.47628 * 239.99575 * 2 1 3 28 28 H 1.09002 * 109.47235 * 119.99978 * 2 1 3 29 29 H 1.09000 * 109.46890 * 59.99811 * 4 3 2 30 30 H 1.09000 * 109.47141 * 299.99454 * 4 3 2 31 31 H 1.08996 * 109.47281 * 60.00046 * 10 9 8 32 32 H 1.09002 * 109.46891 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47348 * 299.99887 * 10 9 8 34 34 H 1.08995 * 109.47171 * 179.97438 * 13 11 9 35 35 H 1.08994 * 109.46743 * 299.99983 * 13 11 9 36 36 H 1.09005 * 109.46810 * 59.99823 * 13 11 9 37 37 H 0.97002 * 119.99907 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47301 * 269.98116 * 23 22 8 39 39 H 1.09005 * 109.46887 * 29.97826 * 23 22 8 40 40 H 1.08999 * 109.47097 * 149.97660 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 -0.0012 6 7 4.0238 3.6604 -1.0508 7 7 4.3365 4.8539 -0.6907 8 6 4.3580 4.9332 0.6189 9 7 4.6583 6.0576 1.3713 10 6 5.7643 5.7895 2.3000 11 6 4.9646 7.2040 0.5054 12 1 5.8219 6.9654 -0.1238 13 6 3.7543 7.5137 -0.3780 14 6 5.2859 8.4050 1.3571 15 1 5.2643 8.3248 2.4338 16 6 5.6065 9.6066 0.7616 17 7 5.6313 9.7047 -0.5496 18 14 6.0041 11.0954 1.8173 19 1 7.1791 10.7951 2.6743 20 1 6.3127 12.2548 0.9421 21 1 4.8361 11.4204 2.6749 22 7 4.0288 3.6994 1.0998 23 6 3.9224 3.2973 2.5046 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9766 -0.8908 30 1 3.8341 0.9764 0.8892 31 1 6.6506 5.4998 1.7355 32 1 5.9791 6.6881 2.8783 33 1 5.4838 4.9815 2.9757 34 1 3.9814 8.3647 -1.0201 35 1 3.5223 6.6450 -0.9939 36 1 2.8968 7.7525 0.2513 37 1 5.8565 10.5501 -0.9686 38 1 4.8888 2.9321 2.8522 39 1 3.6204 4.1547 3.1061 40 1 3.1790 2.5061 2.6007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349761397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:46 Heat of formation + Delta-G solvation = 57.404465 kcal Electronic energy + Delta-G solvation = -21108.520020 eV Core-core repulsion = 17961.172425 eV Total energy + Delta-G solvation = -3147.347595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48549 -38.20010 -37.11211 -34.69752 -32.88989 -31.93943 -29.92397 -29.22717 -27.66302 -26.44366 -25.05400 -24.23465 -23.00839 -21.85192 -20.52611 -19.52920 -17.10858 -16.75869 -16.35975 -16.11340 -15.75013 -15.32640 -14.99071 -14.55882 -13.95154 -13.66721 -13.44791 -13.11151 -12.93574 -12.75503 -12.50562 -12.32583 -11.84289 -11.66519 -11.44061 -11.20106 -10.98993 -10.88708 -10.51942 -10.43672 -10.19029 -10.03286 -9.91215 -9.80703 -9.57730 -9.37432 -8.64099 -8.44004 -7.37586 -6.03287 -4.11780 2.06946 2.65290 3.25463 3.29811 3.35250 3.36550 3.79448 4.32198 4.54849 4.62159 4.70291 4.80777 4.89246 5.00520 5.11546 5.13328 5.16667 5.27928 5.40168 5.45433 5.61777 5.66894 5.81760 5.89820 5.98082 6.14062 6.33926 6.45893 6.85075 6.96408 7.03450 7.20471 7.40714 7.47281 7.71331 7.74441 7.99721 8.30523 8.44925 8.89224 9.35602 9.52687 11.02698 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039276 B = 0.004164 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.733231 B = 6722.354602 C = 6981.067194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.383 6.383 4 C 0.165 3.835 5 C 0.137 3.863 6 N -0.263 5.263 7 N -0.314 5.314 8 C 0.393 3.607 9 N -0.453 5.453 10 C 0.032 3.968 11 C 0.230 3.770 12 H 0.022 0.978 13 C -0.144 4.144 14 C -0.520 4.520 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.882 5.882 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 N -0.487 5.487 23 C 0.080 3.920 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.023 0.977 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -18.559 6.328 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.301 6.301 4 C 0.086 3.914 5 C -0.130 4.130 6 N -0.105 5.105 7 N -0.160 5.160 8 C 0.038 3.962 9 N -0.177 5.177 10 C -0.115 4.115 11 C 0.127 3.873 12 H 0.039 0.961 13 C -0.202 4.202 14 C -0.559 4.559 15 H 0.082 0.918 16 C -0.138 4.138 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 N -0.185 5.185 23 C -0.064 4.064 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.751 -17.702 5.043 19.009 hybrid contribution 0.755 0.150 1.650 1.820 sum -3.996 -17.552 6.693 19.205 Atomic orbital electron populations 1.21741 0.93608 1.02128 1.03420 1.22478 0.95781 0.83473 1.00153 1.88025 1.20072 1.26610 1.95435 1.20273 0.82103 0.87150 1.01860 1.23834 1.10112 0.95878 0.83156 1.73930 1.14271 0.98051 1.24257 1.74882 1.23626 1.10505 1.06976 1.23349 0.98989 0.83948 0.89906 1.59109 1.39046 1.00400 1.19142 1.22448 0.90850 1.02645 0.95560 1.19383 0.94975 0.83438 0.89545 0.96068 1.21982 0.96613 1.02182 0.99462 1.21027 1.47788 0.94121 0.92962 0.91782 1.24901 0.95226 0.98662 0.95037 1.69921 1.47545 1.26040 1.08454 0.86527 0.78755 0.81889 0.80006 1.20274 1.21204 1.20172 1.46000 1.54629 1.09754 1.08096 1.22022 1.02776 1.02733 0.78843 0.91611 0.91080 0.91887 0.93015 0.93402 0.89909 0.91927 0.95177 0.88237 0.93115 0.89452 0.93565 0.95788 0.92640 0.90820 0.88688 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.38 -5.01 10.33 -35.23 -0.36 -5.37 16 4 C 0.16 2.03 6.14 36.01 0.22 2.25 16 5 C 0.14 2.40 7.70 -154.03 -1.19 1.22 16 6 N -0.26 -5.71 12.18 32.99 0.40 -5.31 16 7 N -0.31 -7.56 9.00 30.31 0.27 -7.28 16 8 C 0.39 8.53 6.76 -318.88 -2.15 6.37 16 9 N -0.45 -10.10 4.69 -176.09 -0.83 -10.92 16 10 C 0.03 0.59 9.08 60.06 0.55 1.14 16 11 C 0.23 6.06 1.73 -68.86 -0.12 5.94 16 12 H 0.02 0.63 8.11 -51.93 -0.42 0.21 16 13 C -0.14 -3.89 8.77 37.16 0.33 -3.56 16 14 C -0.52 -14.07 7.88 -34.44 -0.27 -14.34 16 15 H 0.06 1.66 6.40 -52.49 -0.34 1.32 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -25.44 11.32 55.43 0.63 -24.82 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 N -0.49 -8.41 3.21 -121.46 -0.39 -8.80 16 23 C 0.08 0.93 9.20 59.85 0.55 1.48 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 1.87 6.10 -51.93 -0.32 1.56 16 33 H 0.05 0.73 5.40 -51.93 -0.28 0.45 16 34 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 35 H 0.05 1.24 5.42 -51.93 -0.28 0.95 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 39 H 0.09 1.13 7.57 -51.93 -0.39 0.73 16 40 H 0.08 0.79 7.88 -51.93 -0.41 0.39 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -33.55 323.27 -8.07 -41.62 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.09 Total: -2.04 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.55 Total: 2.11 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.09 Total: -57.14 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.36 Total: -5.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.55 -8.07 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349761397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.027 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds