Wall clock time and date at job start Mon Mar 30 2020 00:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47181 * 2 1 4 4 C 1.42906 * 113.99828 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46702 * 179.97438 * 4 3 2 6 6 N 1.30285 * 126.34608 * 269.68238 * 5 4 3 7 7 N 1.28530 * 110.05264 * 179.82493 * 6 5 4 8 8 C 1.31217 * 109.86028 * 0.45531 * 7 6 5 9 9 N 1.38581 * 126.47399 * 179.73043 * 8 7 6 10 10 C 1.46895 * 110.99679 * 236.04572 * 9 8 7 11 11 C 1.46897 * 110.99882 * 359.97438 * 9 8 7 12 12 H 1.08991 * 109.47746 * 300.00092 * 11 9 8 13 13 C 1.53005 * 109.47235 * 60.00339 * 11 9 8 14 14 C 1.50704 * 109.46913 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00104 * 359.97438 * 14 11 9 16 16 C 1.37881 * 120.00049 * 180.02562 * 14 11 9 17 17 N 1.31515 * 119.99751 * 0.02562 * 16 14 11 18 18 Si 1.86790 * 120.00084 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47377 * 60.00024 * 18 16 14 20 20 H 1.48501 * 109.47538 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47173 * 300.00075 * 18 16 14 22 22 N 1.36452 * 107.04978 * 359.72678 * 8 7 6 23 23 C 1.46504 * 127.13452 * 179.97438 * 22 8 7 24 24 H 1.08998 * 109.46780 * 60.00156 * 1 2 3 25 25 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47176 * 300.00297 * 1 2 3 27 27 H 1.09000 * 109.47628 * 239.99575 * 2 1 3 28 28 H 1.09002 * 109.47235 * 119.99978 * 2 1 3 29 29 H 1.09000 * 109.46890 * 59.99811 * 4 3 2 30 30 H 1.09000 * 109.47141 * 299.99454 * 4 3 2 31 31 H 1.08996 * 109.47281 * 60.00046 * 10 9 8 32 32 H 1.09002 * 109.46891 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47348 * 299.99887 * 10 9 8 34 34 H 1.08995 * 109.47171 * 179.97438 * 13 11 9 35 35 H 1.08994 * 109.46743 * 299.99983 * 13 11 9 36 36 H 1.09005 * 109.46810 * 59.99823 * 13 11 9 37 37 H 0.97002 * 119.99907 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47301 * 269.98116 * 23 22 8 39 39 H 1.09005 * 109.46887 * 29.97826 * 23 22 8 40 40 H 1.08999 * 109.47097 * 149.97660 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 -0.0012 6 7 4.0238 3.6604 -1.0508 7 7 4.3365 4.8539 -0.6907 8 6 4.3580 4.9332 0.6189 9 7 4.6583 6.0576 1.3713 10 6 5.7643 5.7895 2.3000 11 6 4.9646 7.2040 0.5054 12 1 5.8219 6.9654 -0.1238 13 6 3.7543 7.5137 -0.3780 14 6 5.2859 8.4050 1.3571 15 1 5.2643 8.3248 2.4338 16 6 5.6065 9.6066 0.7616 17 7 5.6313 9.7047 -0.5496 18 14 6.0041 11.0954 1.8173 19 1 7.1791 10.7951 2.6743 20 1 6.3127 12.2548 0.9421 21 1 4.8361 11.4204 2.6749 22 7 4.0288 3.6994 1.0998 23 6 3.9224 3.2973 2.5046 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9766 -0.8908 30 1 3.8341 0.9764 0.8892 31 1 6.6506 5.4998 1.7355 32 1 5.9791 6.6881 2.8783 33 1 5.4838 4.9815 2.9757 34 1 3.9814 8.3647 -1.0201 35 1 3.5223 6.6450 -0.9939 36 1 2.8968 7.7525 0.2513 37 1 5.8565 10.5501 -0.9686 38 1 4.8888 2.9321 2.8522 39 1 3.6204 4.1547 3.1061 40 1 3.1790 2.5061 2.6007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349761397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:46 Heat of formation + Delta-G solvation = 35.536791 kcal Electronic energy + Delta-G solvation = -21109.468273 eV Core-core repulsion = 17961.172425 eV Total energy + Delta-G solvation = -3148.295849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.97968 -39.19977 -38.74979 -36.08998 -34.83325 -32.85978 -31.26687 -31.09807 -28.89440 -27.79358 -26.84752 -25.90316 -23.66006 -23.64539 -21.87572 -21.27244 -18.57621 -18.04149 -17.83187 -17.31244 -17.03132 -16.81992 -16.32435 -16.18501 -15.60441 -15.02413 -14.61578 -14.30779 -14.19978 -13.92327 -13.74674 -13.49827 -13.20606 -12.97565 -12.83426 -12.72690 -12.37732 -12.26948 -12.25207 -12.12449 -12.08581 -12.00343 -11.53896 -11.09998 -11.03908 -10.62719 -10.59162 -10.50030 -9.09098 -8.12697 -6.29267 0.70099 1.30109 1.45725 1.48502 1.56111 1.77222 2.41644 2.76366 3.01690 3.18225 3.51609 3.71007 3.92762 4.08617 4.21819 4.22596 4.32206 4.38528 4.46515 4.48038 4.55155 4.59522 4.74192 4.81816 4.87151 4.91677 4.96917 5.06634 5.14944 5.28912 5.29495 5.39168 5.52842 5.64504 5.92016 5.98143 6.15256 6.18450 6.55156 6.80283 7.39703 7.81751 8.93943 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039276 B = 0.004164 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.733231 B = 6722.354602 C = 6981.067194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.414 6.414 4 C 0.166 3.834 5 C 0.162 3.838 6 N -0.315 5.315 7 N -0.366 5.366 8 C 0.372 3.628 9 N -0.455 5.455 10 C 0.033 3.967 11 C 0.243 3.757 12 H -0.023 1.023 13 C -0.129 4.129 14 C -0.531 4.531 15 H 0.077 0.923 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.288 1.288 21 H -0.269 1.269 22 N -0.478 5.478 23 C 0.066 3.934 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.018 0.982 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -20.766 9.190 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.333 6.333 4 C 0.088 3.912 5 C -0.107 4.107 6 N -0.155 5.155 7 N -0.211 5.211 8 C 0.014 3.986 9 N -0.179 5.179 10 C -0.114 4.114 11 C 0.137 3.863 12 H -0.006 1.006 13 C -0.188 4.188 14 C -0.570 4.570 15 H 0.094 0.906 16 C -0.188 4.188 17 N -0.558 5.558 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.213 1.213 21 H -0.194 1.194 22 N -0.174 5.174 23 C -0.075 4.075 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.037 0.963 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.964 -19.958 7.939 22.045 hybrid contribution 0.757 0.622 0.756 1.237 sum -4.207 -19.336 8.694 21.614 Atomic orbital electron populations 1.21790 0.93444 1.03484 1.02262 1.22755 0.95927 0.81697 1.02023 1.87970 1.20059 1.29462 1.95804 1.20558 0.82437 0.83599 1.04625 1.24895 1.06207 0.97438 0.82205 1.73821 1.17197 0.98028 1.26473 1.74695 1.25104 1.12354 1.08974 1.23216 1.00269 0.85379 0.89698 1.59031 1.40344 0.99945 1.18591 1.22559 0.89585 1.04053 0.95166 1.18955 0.92609 0.85231 0.89470 1.00582 1.21787 0.96911 1.00912 0.99151 1.21358 1.47518 0.94473 0.93601 0.90550 1.25847 0.94924 1.01863 0.96191 1.70090 1.48507 1.26739 1.10436 0.85391 0.79026 0.77672 0.78211 1.18795 1.21343 1.19370 1.46257 1.53076 1.07862 1.10238 1.22515 1.05711 1.03750 0.75495 0.93319 0.88470 0.92508 0.91909 0.90649 0.88728 0.87510 0.96321 0.88735 0.88490 0.91965 0.93953 0.96190 0.92740 0.87592 0.88744 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -9.68 10.33 -148.98 -1.54 -11.22 16 4 C 0.17 3.54 6.14 71.24 0.44 3.98 16 5 C 0.16 5.43 7.70 137.65 1.06 6.49 16 6 N -0.31 -13.93 12.18 -49.54 -0.60 -14.53 16 7 N -0.37 -18.33 9.00 -58.00 -0.52 -18.85 16 8 C 0.37 16.25 6.76 260.11 1.76 18.01 16 9 N -0.46 -20.46 4.69 -711.02 -3.33 -23.80 16 10 C 0.03 1.18 9.08 127.69 1.16 2.34 16 11 C 0.24 13.28 1.73 44.17 0.08 13.36 16 12 H -0.02 -1.47 8.11 -2.39 -0.02 -1.49 16 13 C -0.13 -7.33 8.77 71.98 0.63 -6.70 16 14 C -0.53 -29.14 7.88 25.60 0.20 -28.94 16 15 H 0.08 3.91 6.40 -2.91 -0.02 3.89 16 16 C 0.01 0.63 5.30 84.66 0.45 1.08 16 17 N -0.92 -54.90 11.32 21.45 0.24 -54.66 16 18 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 N -0.48 -15.62 3.21 -538.17 -1.73 -17.34 16 23 C 0.07 1.26 9.20 127.77 1.18 2.44 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.35 7.93 -2.39 -0.02 1.33 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 3.46 6.10 -2.39 -0.01 3.44 16 33 H 0.10 2.51 5.40 -2.39 -0.01 2.49 16 34 H 0.06 3.80 6.07 -2.39 -0.01 3.79 16 35 H 0.04 2.41 5.42 -2.39 -0.01 2.39 16 36 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 38 H 0.11 1.40 7.85 -2.39 -0.02 1.39 16 39 H 0.09 1.89 7.57 -2.38 -0.02 1.87 16 40 H 0.12 1.56 7.88 -2.39 -0.02 1.54 16 Total: -1.00 -78.14 323.27 3.74 -74.40 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.03 Total: 8.94 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 8.17 Total: 11.92 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.94 Total: -129.18 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.54 Total: -11.22 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -78.14 3.74 -74.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349761397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.935 kcal (2) G-P(sol) polarization free energy of solvation -78.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds