Wall clock time and date at job start Mon Mar 30 2020 01:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00396 * 2 1 4 4 H 1.48498 * 109.47236 * 239.99699 * 3 2 1 5 5 H 1.48502 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47162 * 119.99601 * 3 2 1 7 7 C 1.37884 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46715 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00538 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99608 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00700 * 179.97438 * 13 12 11 16 16 C 1.46494 * 120.00365 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47345 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46817 * 65.00126 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99932 * 17 16 15 23 23 H 0.97006 * 119.99879 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46711 * 60.00396 * 9 7 2 25 25 H 1.09001 * 109.46780 * 300.00036 * 9 7 2 26 26 H 1.08996 * 109.47515 * 60.00117 * 10 9 7 27 27 H 1.08999 * 109.46820 * 299.99990 * 10 9 7 28 28 H 1.08996 * 109.47337 * 59.99636 * 11 10 9 29 29 H 1.08999 * 109.47164 * 299.99406 * 11 10 9 30 30 H 0.97008 * 119.99995 * 359.97438 * 12 11 10 31 31 H 0.97008 * 119.99832 * 0.02562 * 15 13 12 32 32 H 1.09008 * 109.47020 * 60.00160 * 16 15 13 33 33 H 1.08997 * 109.47417 * 300.00155 * 16 15 13 34 34 H 1.09002 * 109.47070 * 305.00306 * 17 16 15 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4800 -4.9871 0.0033 12 7 2.4319 -6.1007 0.0037 13 6 1.9827 -7.3713 0.0047 14 8 0.7872 -7.5935 0.0058 15 7 2.8584 -8.3958 0.0045 16 6 2.3700 -9.7769 0.0062 17 6 3.5599 -10.7387 0.0050 18 6 4.3417 -10.5843 1.3110 19 6 5.5313 -11.5464 1.3102 20 6 5.0240 -12.9846 1.1864 21 6 4.2422 -13.1390 -0.1197 22 6 3.0531 -12.1770 -0.1190 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5575 -0.8880 25 1 0.6245 -2.5563 0.8920 26 1 2.8717 -3.6037 0.8926 27 1 2.8717 -3.6051 -0.8873 28 1 0.8536 -5.0453 -0.8868 29 1 0.8531 -5.0443 0.8931 30 1 3.3857 -5.9235 0.0032 31 1 3.8121 -8.2186 0.0040 32 1 1.7634 -9.9489 -0.8830 33 1 1.7654 -9.9475 0.8970 34 1 4.2117 -10.5092 -0.8380 35 1 4.7028 -9.5597 1.3995 36 1 3.6899 -10.8138 2.1540 37 1 6.0881 -11.4368 2.2408 38 1 6.1833 -11.3173 0.4672 39 1 4.3721 -13.2137 2.0294 40 1 5.8716 -13.6700 1.1853 41 1 3.8812 -14.1637 -0.2080 42 1 4.8941 -12.9099 -0.9626 43 1 2.4013 -12.4065 0.7239 44 1 2.4961 -12.2870 -1.0495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351507587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:56 Heat of formation + Delta-G solvation = -101.656074 kcal Electronic energy + Delta-G solvation = -19898.862651 eV Core-core repulsion = 16848.158017 eV Total energy + Delta-G solvation = -3050.704634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12229 -39.55430 -37.06019 -35.76230 -35.17432 -33.15369 -31.93619 -31.53696 -28.62013 -26.55340 -24.75359 -23.49829 -22.29786 -22.19934 -21.78260 -20.62175 -19.20911 -18.52289 -17.29221 -16.92707 -16.49918 -16.28944 -15.90658 -15.47632 -15.29186 -15.08007 -14.91579 -14.67340 -14.24588 -13.85411 -13.73055 -13.43417 -13.08181 -12.99755 -12.72510 -12.65154 -12.54122 -12.39063 -11.97770 -11.90126 -11.65596 -11.65335 -11.32709 -11.32321 -11.18042 -10.97656 -10.90988 -10.53862 -10.38015 -9.74546 -8.18318 -6.29960 1.42252 1.45597 1.53356 1.73144 2.15010 2.42917 3.15176 3.34652 3.67659 3.80416 3.86995 4.17888 4.23588 4.25281 4.35934 4.39060 4.55316 4.57204 4.59125 4.66687 4.73382 4.80617 4.85497 4.96920 5.01110 5.05123 5.17930 5.19881 5.28213 5.29670 5.31625 5.41399 5.45620 5.47587 5.52485 5.55754 5.63163 5.72175 5.85222 6.02521 6.23559 6.87164 7.12660 7.39407 7.59053 8.93622 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047797 B = 0.002406 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.673443 B =11632.377060 C =12059.383933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.730 5.730 13 C 0.695 3.305 14 O -0.643 6.643 15 N -0.729 5.729 16 C 0.143 3.857 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.412 0.588 31 H 0.411 0.589 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.500 -26.492 0.806 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.137 4.137 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.395 3.605 14 O -0.526 6.526 15 N -0.386 5.386 16 C 0.019 3.981 17 C -0.105 4.105 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.151 4.151 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.248 0.752 31 H 0.248 0.752 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.275 -26.594 0.809 29.734 hybrid contribution 0.445 1.233 0.046 1.311 sum 13.719 -25.361 0.855 28.847 Atomic orbital electron populations 1.70112 1.07966 1.27847 1.51622 1.26052 0.95774 1.03631 0.94812 0.85449 0.78158 0.77834 0.79279 1.18979 1.21228 1.18999 1.21654 0.93760 0.91965 1.50532 0.91458 1.18946 0.94475 0.92987 0.95067 1.21582 0.98411 0.91609 1.02146 1.21068 0.91387 0.84712 1.00369 1.45021 1.10820 1.03549 1.79208 1.16220 0.85098 0.81483 0.77743 1.90890 1.16611 1.84906 1.60143 1.44963 1.09197 1.04793 1.79645 1.21289 0.96888 0.78834 1.01096 1.21333 0.95303 0.94408 0.99428 1.21605 0.97210 0.99824 0.96621 1.21525 0.97142 0.94639 1.02203 1.21565 0.99878 0.96745 0.97744 1.21494 0.96689 0.99107 0.98034 1.21499 0.98214 0.93068 1.02291 0.92827 0.98971 0.98993 0.91309 0.91305 0.93625 0.93638 0.75160 0.75191 0.92843 0.93100 0.89515 0.91636 0.92547 0.91738 0.91428 0.92388 0.91454 0.91406 0.91568 0.92006 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 11 C 0.15 5.48 5.67 86.38 0.49 5.97 16 12 N -0.73 -20.91 5.56 -478.54 -2.66 -23.57 16 13 C 0.69 21.52 8.57 179.06 1.53 23.05 16 14 O -0.64 -26.60 16.34 -4.01 -0.07 -26.67 16 15 N -0.73 -15.15 5.29 -478.54 -2.53 -17.68 16 16 C 0.14 2.75 5.06 86.38 0.44 3.19 16 17 C -0.09 -1.06 2.23 -10.79 -0.02 -1.08 16 18 C -0.11 -1.33 5.08 30.59 0.16 -1.17 16 19 C -0.12 -1.12 5.92 30.60 0.18 -0.94 16 20 C -0.12 -1.13 5.92 30.60 0.18 -0.95 16 21 C -0.12 -1.07 5.92 30.58 0.18 -0.89 16 22 C -0.11 -1.28 5.20 30.58 0.16 -1.12 16 23 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.41 8.68 8.49 -92.70 -0.79 7.89 16 31 H 0.41 5.73 7.67 -92.70 -0.71 5.01 16 32 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.72 7.18 -2.39 -0.02 0.71 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -72.03 351.66 0.82 -71.21 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.54 Total: 14.28 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 4.30 Total: -6.23 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -4.91 Total: -98.53 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.07 Total: -26.67 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.03 0.82 -71.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351507587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.441 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds