Wall clock time and date at job start Mon Mar 30 2020 01:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21591 * 119.99628 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00504 * 179.97438 * 15 14 13 18 18 C 1.46492 * 120.00377 * 179.97438 * 17 15 14 19 19 H 1.08998 * 115.55095 * 350.58006 * 18 17 15 20 20 C 1.52993 * 117.50143 * 136.24941 * 18 17 15 21 21 C 1.52999 * 117.49816 * 204.91157 * 18 17 15 22 22 C 1.52994 * 117.50146 * 359.97438 * 21 18 17 23 23 C 1.53005 * 117.49961 * 145.02013 * 21 18 17 24 24 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 25 25 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 26 26 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 29 29 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 30 30 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 34 34 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 35 35 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 36 36 H 0.97006 * 119.99243 * 359.97438 * 17 15 14 37 37 H 1.08999 * 117.50388 * 214.98081 * 20 18 17 38 38 H 1.09011 * 117.49782 * 359.97438 * 20 18 17 39 39 H 1.08997 * 109.47307 * 59.99513 * 22 21 18 40 40 H 1.09002 * 109.47461 * 180.02562 * 22 21 18 41 41 H 1.09003 * 109.46930 * 300.00273 * 22 21 18 42 42 H 1.09003 * 109.46870 * 59.99581 * 23 21 18 43 43 H 1.08998 * 109.47093 * 179.97438 * 23 21 18 44 44 H 1.09004 * 109.46973 * 300.00256 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5758 -1.4800 -3.7811 17 7 1.4272 0.1437 -4.7700 18 6 1.7811 -0.3568 -6.1005 19 1 2.5351 -1.1436 -6.1216 20 6 0.6714 -0.4134 -7.1522 21 6 1.7726 0.6446 -7.2573 22 6 1.3945 2.0919 -6.9360 23 6 2.8227 0.4645 -8.3554 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7216 1.2490 31 1 1.6767 -1.7490 1.2492 32 1 2.8622 -1.8819 4.7337 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 0.9938 0.7578 -2.3564 36 1 0.8693 0.9323 -4.6809 37 1 0.6954 -1.2373 -7.8654 38 1 -0.3223 -0.0787 -6.8539 39 1 2.0973 2.4981 -6.2086 40 1 1.4300 2.6878 -7.8480 41 1 0.3864 2.1209 -6.5225 42 1 2.6983 -0.5135 -8.8201 43 1 2.6981 1.2428 -9.1083 44 1 3.8195 0.5357 -7.9201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351832227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:14 Heat of formation + Delta-G solvation = -32.396148 kcal Electronic energy + Delta-G solvation = -20711.261214 eV Core-core repulsion = 17663.559915 eV Total energy + Delta-G solvation = -3047.701299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12297 -38.50911 -36.99915 -33.67910 -33.09814 -31.92614 -29.15177 -27.82327 -27.08217 -26.50150 -26.02369 -23.16015 -22.05381 -20.66222 -19.44126 -18.78914 -17.56265 -16.47920 -16.18989 -15.25311 -14.87962 -14.79414 -14.42996 -14.11118 -13.84006 -13.70012 -13.25478 -13.00787 -12.82182 -12.72593 -12.54818 -12.20532 -12.04984 -12.00462 -11.49811 -11.27189 -11.05227 -10.98148 -10.86737 -10.61887 -10.38533 -10.26038 -10.07652 -9.97698 -9.86097 -9.19178 -8.92817 -8.91625 -8.45851 -8.34765 -5.98961 -4.00323 2.76168 3.20920 3.32388 3.37883 3.39003 3.71050 4.31636 4.42510 4.46825 4.58906 4.67403 4.77543 5.33250 5.33553 5.36395 5.49189 5.52962 5.58742 5.60828 5.62787 5.65748 5.74840 5.77682 5.84449 6.00039 6.18850 6.23092 6.29872 6.42676 6.51072 6.60904 6.63827 6.80691 7.05110 7.07979 7.08694 7.16341 7.65337 7.77950 7.99708 8.17740 8.41497 8.78545 9.04293 9.62594 11.12495 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046630 B = 0.003159 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.333919 B = 8860.997204 C = 9083.837118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.736 5.736 15 C 0.703 3.297 16 O -0.592 6.592 17 N -0.721 5.721 18 C 0.115 3.885 19 H 0.137 0.863 20 C -0.190 4.190 21 C -0.143 4.143 22 C -0.117 4.117 23 C -0.114 4.114 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 7.034 -21.262 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.023 3.977 14 N -0.391 5.391 15 C 0.403 3.597 16 O -0.470 6.470 17 N -0.375 5.375 18 C 0.007 3.993 19 H 0.155 0.845 20 C -0.229 4.229 21 C -0.145 4.145 22 C -0.174 4.174 23 C -0.171 4.171 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.228 0.772 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.269 5.978 -21.154 22.225 hybrid contribution -0.920 1.151 0.998 1.779 sum -4.189 7.129 -20.157 21.787 Atomic orbital electron populations 1.21751 0.95315 1.01157 1.00106 1.20916 0.95454 0.95870 0.95055 1.21751 1.00559 0.95905 1.00109 1.19084 0.96385 0.95235 0.89395 1.21145 1.31227 1.12097 0.90537 0.92328 1.25015 0.95325 0.95081 0.99064 1.69957 1.36871 1.23004 1.23546 0.86710 0.79124 0.79760 0.82689 1.21398 1.20341 1.20349 1.21503 0.98696 0.95659 0.81802 1.45365 1.56072 1.33146 1.04509 1.15960 0.80366 0.82902 0.80487 1.90908 1.42758 1.27472 1.85905 1.44472 1.56448 1.32654 1.03908 1.21533 1.00336 0.99538 0.77853 0.84537 1.23791 0.94972 1.01203 1.02887 1.22092 1.00242 0.92827 0.99348 1.21309 1.00973 0.93264 1.01876 1.21342 0.97508 1.01869 0.96375 0.91493 0.95349 0.93354 0.93353 0.95342 0.91497 0.96305 0.96308 0.92975 0.91967 0.91965 0.77194 0.77153 0.88153 0.88663 0.91930 0.91895 0.92556 0.92235 0.92056 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.15 2.65 4.56 -4.04 -0.02 2.63 16 14 N -0.74 -10.94 4.96 -65.23 -0.32 -11.27 16 15 C 0.70 11.08 8.57 -86.92 -0.74 10.33 16 16 O -0.59 -11.87 15.91 5.29 0.08 -11.79 16 17 N -0.72 -8.36 5.35 -58.69 -0.31 -8.67 16 18 C 0.11 1.23 6.12 -67.94 -0.42 0.82 16 19 H 0.14 1.72 7.40 -51.93 -0.38 1.34 16 20 C -0.19 -1.59 9.75 -26.70 -0.26 -1.85 16 21 C -0.14 -1.17 2.70 -154.47 -0.42 -1.59 16 22 C -0.12 -0.82 8.85 37.15 0.33 -0.49 16 23 C -0.11 -0.81 9.85 37.16 0.37 -0.44 16 24 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 25 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 30 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.39 4.87 6.18 -40.82 -0.25 4.61 16 36 H 0.39 3.53 7.71 -40.82 -0.31 3.22 16 37 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.09 0.75 8.05 -51.92 -0.42 0.34 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 41 H 0.06 0.35 7.61 -51.93 -0.40 -0.04 16 42 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 43 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -31.30 349.38 -8.32 -39.63 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.63 Total: 3.85 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.12 Total: -7.45 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.10 Total: -45.69 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.30 -8.32 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351832227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.233 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds