Wall clock time and date at job start Mon Mar 30 2020 01:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21591 * 119.99628 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00504 * 179.97438 * 15 14 13 18 18 C 1.46492 * 120.00377 * 179.97438 * 17 15 14 19 19 H 1.08998 * 115.55095 * 350.58006 * 18 17 15 20 20 C 1.52993 * 117.50143 * 136.24941 * 18 17 15 21 21 C 1.52999 * 117.49816 * 204.91157 * 18 17 15 22 22 C 1.52994 * 117.50146 * 359.97438 * 21 18 17 23 23 C 1.53005 * 117.49961 * 145.02013 * 21 18 17 24 24 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 25 25 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 26 26 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 29 29 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 30 30 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 34 34 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 35 35 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 36 36 H 0.97006 * 119.99243 * 359.97438 * 17 15 14 37 37 H 1.08999 * 117.50388 * 214.98081 * 20 18 17 38 38 H 1.09011 * 117.49782 * 359.97438 * 20 18 17 39 39 H 1.08997 * 109.47307 * 59.99513 * 22 21 18 40 40 H 1.09002 * 109.47461 * 180.02562 * 22 21 18 41 41 H 1.09003 * 109.46930 * 300.00273 * 22 21 18 42 42 H 1.09003 * 109.46870 * 59.99581 * 23 21 18 43 43 H 1.08998 * 109.47093 * 179.97438 * 23 21 18 44 44 H 1.09004 * 109.46973 * 300.00256 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5758 -1.4800 -3.7811 17 7 1.4272 0.1437 -4.7700 18 6 1.7811 -0.3568 -6.1005 19 1 2.5351 -1.1436 -6.1216 20 6 0.6714 -0.4134 -7.1522 21 6 1.7726 0.6446 -7.2573 22 6 1.3945 2.0919 -6.9360 23 6 2.8227 0.4645 -8.3554 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7216 1.2490 31 1 1.6767 -1.7490 1.2492 32 1 2.8622 -1.8819 4.7337 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 0.9938 0.7578 -2.3564 36 1 0.8693 0.9323 -4.6809 37 1 0.6954 -1.2373 -7.8654 38 1 -0.3223 -0.0787 -6.8539 39 1 2.0973 2.4981 -6.2086 40 1 1.4300 2.6878 -7.8480 41 1 0.3864 2.1209 -6.5225 42 1 2.6983 -0.5135 -8.8201 43 1 2.6981 1.2428 -9.1083 44 1 3.8195 0.5357 -7.9201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351832227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:14 Heat of formation + Delta-G solvation = -52.318511 kcal Electronic energy + Delta-G solvation = -20712.125112 eV Core-core repulsion = 17663.559915 eV Total energy + Delta-G solvation = -3048.565197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28468 -39.51140 -38.45464 -35.25061 -34.46980 -33.54968 -29.86655 -29.03460 -28.38057 -27.94814 -27.45618 -24.95939 -23.10952 -21.86122 -20.28094 -20.08487 -18.94338 -18.35109 -17.39092 -16.57271 -16.52679 -15.88237 -15.77783 -15.26154 -15.05015 -14.67598 -14.61500 -14.32069 -13.96453 -13.92159 -13.78715 -13.45962 -13.09377 -12.84012 -12.74543 -12.62199 -12.58497 -12.31546 -12.21440 -12.07230 -12.00593 -11.99180 -11.52177 -11.45179 -10.98664 -10.86318 -10.68496 -10.49480 -10.18892 -9.47367 -8.12703 -6.20669 1.43311 1.45573 1.52680 1.64392 2.06455 2.45361 2.89851 3.21650 3.25728 3.71541 3.91990 3.96871 3.98387 4.10601 4.18830 4.23950 4.62812 4.70419 4.74638 4.79319 4.79813 4.90409 4.94680 4.98008 5.05004 5.06769 5.09514 5.12755 5.13705 5.30477 5.40861 5.43592 5.49000 5.51592 5.55029 5.57613 5.60208 5.81894 5.91062 6.00672 6.32067 6.94243 7.09956 7.47004 7.57988 8.99771 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046630 B = 0.003159 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.333919 B = 8860.997204 C = 9083.837118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.292 1.292 11 H -0.266 1.266 12 H -0.266 1.266 13 C 0.161 3.839 14 N -0.722 5.722 15 C 0.700 3.300 16 O -0.641 6.641 17 N -0.701 5.701 18 C 0.079 3.921 19 H 0.110 0.890 20 C -0.175 4.175 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.056 0.944 30 H -0.014 1.014 31 H -0.014 1.014 32 H 0.259 0.741 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.410 0.590 36 H 0.411 0.589 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.041 9.762 -22.829 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.218 1.218 11 H -0.191 1.191 12 H -0.191 1.191 13 C 0.037 3.963 14 N -0.379 5.379 15 C 0.400 3.600 16 O -0.523 6.523 17 N -0.355 5.355 18 C -0.027 4.027 19 H 0.128 0.872 20 C -0.213 4.213 21 C -0.128 4.128 22 C -0.176 4.176 23 C -0.174 4.174 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.248 0.752 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.337 8.774 -22.767 24.976 hybrid contribution -0.263 0.270 1.380 1.430 sum -5.600 9.044 -21.387 23.886 Atomic orbital electron populations 1.21683 0.93508 1.00939 1.01636 1.20709 0.96763 0.96331 0.92604 1.21683 0.99875 0.94568 1.01636 1.18968 0.94281 0.94209 0.92314 1.21567 1.30461 1.12143 0.91031 0.90832 1.25963 0.95669 0.95862 1.02756 1.70123 1.38767 1.25008 1.24148 0.85589 0.78962 0.78755 0.78274 1.21771 1.19095 1.19114 1.21063 0.97451 0.94961 0.82866 1.44985 1.56150 1.33358 1.03362 1.16111 0.80057 0.82547 0.81283 1.90882 1.44971 1.29794 1.86602 1.44228 1.55656 1.32483 1.03100 1.21594 1.01951 1.01103 0.78084 0.87229 1.23857 0.94922 1.01467 1.01090 1.22204 0.99958 0.93277 0.97381 1.21366 1.01437 0.92214 1.02557 1.21398 0.96810 1.02740 0.96436 0.92492 0.91167 0.94525 0.94525 0.91166 0.92495 0.99610 0.99610 0.93180 0.93930 0.93923 0.75242 0.75200 0.87394 0.87521 0.92398 0.90540 0.91439 0.91907 0.90424 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -27.54 7.65 25.60 0.20 -27.35 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 8 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 9 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.16 5.93 4.56 86.38 0.39 6.32 16 14 N -0.72 -20.46 4.96 -478.55 -2.37 -22.84 16 15 C 0.70 21.65 8.57 179.05 1.53 23.18 16 16 O -0.64 -26.38 15.91 -4.00 -0.06 -26.45 16 17 N -0.70 -15.06 5.35 -457.84 -2.45 -17.51 16 18 C 0.08 1.62 6.12 44.99 0.28 1.90 16 19 H 0.11 2.86 7.40 -2.39 -0.02 2.85 16 20 C -0.17 -2.51 9.75 30.62 0.30 -2.21 16 21 C -0.13 -1.77 2.70 -52.16 -0.14 -1.91 16 22 C -0.12 -1.27 8.85 71.98 0.64 -0.63 16 23 C -0.12 -1.44 9.85 71.98 0.71 -0.73 16 24 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 25 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 29 H 0.06 2.02 6.62 -2.38 -0.02 2.01 16 30 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.41 8.74 6.18 -92.71 -0.57 8.17 16 36 H 0.41 6.08 7.71 -92.70 -0.71 5.36 16 37 H 0.11 1.40 8.05 -2.39 -0.02 1.38 16 38 H 0.11 1.32 8.05 -2.38 -0.02 1.30 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.65 7.93 -2.39 -0.02 0.63 16 41 H 0.07 0.58 7.61 -2.39 -0.02 0.56 16 42 H 0.06 0.73 7.90 -2.39 -0.02 0.71 16 43 H 0.08 0.72 7.92 -2.39 -0.02 0.70 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.99 349.38 2.74 -68.26 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.30 Total: 18.56 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.62 Total: -8.41 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -4.54 Total: -97.53 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.06 Total: -26.45 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.99 2.74 -68.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351832227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.937 kcal (2) G-P(sol) polarization free energy of solvation -70.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds