Wall clock time and date at job start Mon Mar 30 2020 01:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.01825 * 2 1 4 4 C 1.53871 * 110.03011 * 238.55502 * 2 1 3 5 5 C 1.54269 * 106.59813 * 240.71720 * 4 2 1 6 6 C 1.54885 * 104.19677 * 23.61322 * 5 4 2 7 7 H 1.09002 * 110.75709 * 80.37016 * 6 5 4 8 8 N 1.46499 * 110.91190 * 203.66950 * 6 5 4 9 9 C 1.34776 * 119.99949 * 270.94975 * 8 6 5 10 10 O 1.21585 * 120.00211 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99928 * 180.02562 * 9 8 6 12 12 C 1.46509 * 119.99804 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46799 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47634 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99755 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00235 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00012 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99876 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47124 * 89.99972 * 19 17 15 21 21 H 1.48494 * 109.47067 * 210.00018 * 19 17 15 22 22 H 1.48505 * 109.47253 * 330.00160 * 19 17 15 23 23 C 1.54271 * 110.03040 * 121.39213 * 2 1 3 24 24 H 1.09004 * 109.47207 * 298.61264 * 1 2 3 25 25 H 1.09001 * 109.46788 * 58.60613 * 1 2 3 26 26 H 1.08992 * 109.47400 * 178.60690 * 1 2 3 27 27 H 1.09006 * 109.46861 * 181.38691 * 3 2 1 28 28 H 1.08994 * 109.47236 * 301.38963 * 3 2 1 29 29 H 1.09006 * 109.47062 * 61.39406 * 3 2 1 30 30 H 1.09000 * 110.03307 * 0.02562 * 4 2 1 31 31 H 1.08999 * 110.03179 * 121.38860 * 4 2 1 32 32 H 1.09002 * 110.48538 * 264.93327 * 5 4 2 33 33 H 1.08996 * 110.48433 * 142.29362 * 5 4 2 34 34 H 0.96993 * 120.00129 * 90.95634 * 8 6 5 35 35 H 0.97001 * 120.00097 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.46772 * 299.99996 * 12 11 9 37 37 H 1.08996 * 109.47080 * 60.00526 * 12 11 9 38 38 H 1.08996 * 109.47353 * 300.00124 * 13 12 11 39 39 H 1.09004 * 109.47358 * 60.00172 * 13 12 11 40 40 H 1.09005 * 109.47163 * 300.00481 * 14 13 12 41 41 H 1.09004 * 109.46838 * 59.99836 * 14 13 12 42 42 H 0.96996 * 119.99994 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.48367 * 336.99535 * 23 2 1 44 44 H 1.09002 * 110.59675 * 214.40649 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0570 -0.7542 -1.2333 5 6 2.8874 -1.9411 -0.7026 6 6 2.3279 -2.1899 0.7201 7 1 1.4029 -2.7649 0.6764 8 7 3.3186 -2.8671 1.5605 9 6 3.3715 -4.2135 1.5880 10 8 2.5973 -4.8662 0.9150 11 7 4.2825 -4.8365 2.3615 12 6 4.3404 -6.3001 2.3909 13 6 5.4540 -6.7475 3.3399 14 6 5.5149 -8.2760 3.3702 15 6 6.6113 -8.7167 4.3053 16 1 7.2056 -7.9803 4.8257 17 6 6.8564 -10.0601 4.4958 18 7 7.8136 -10.4447 5.3115 19 14 5.8290 -11.3338 3.5951 20 1 6.4684 -11.6556 2.2941 21 1 5.7348 -12.5660 4.4185 22 1 4.4668 -10.7925 3.3567 23 6 2.0584 -0.7550 1.2372 24 1 -0.3634 0.4921 0.9022 25 1 -0.3633 0.5353 -0.8772 26 1 -0.3634 -1.0273 -0.0250 27 1 3.1435 1.4272 -0.0249 28 1 1.6752 1.9622 -0.8772 29 1 1.7158 1.9474 0.9023 30 1 1.2228 -1.1198 -1.8321 31 1 2.6860 -0.0960 -1.8328 32 1 3.9439 -1.6770 -0.6563 33 1 2.7400 -2.8203 -1.3296 34 1 3.9364 -2.3464 2.0972 35 1 4.9004 -4.3158 2.8982 36 1 3.3857 -6.6945 2.7389 37 1 4.5451 -6.6758 1.3884 38 1 6.4085 -6.3531 2.9915 39 1 5.2498 -6.3717 4.3425 40 1 4.5603 -8.6708 3.7183 41 1 5.7193 -8.6513 2.3674 42 1 7.9863 -11.3897 5.4452 43 1 1.3060 -0.7687 2.0258 44 1 2.9807 -0.3003 1.5989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351833977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:48 Heat of formation + Delta-G solvation = -68.691426 kcal Electronic energy + Delta-G solvation = -20176.142494 eV Core-core repulsion = 17126.867314 eV Total energy + Delta-G solvation = -3049.275180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23908 -38.91428 -35.59768 -34.43363 -33.27359 -31.69139 -30.88892 -28.70865 -27.67117 -26.92564 -24.45801 -22.88606 -21.17687 -20.70946 -20.28955 -19.07294 -18.08549 -16.84900 -16.42807 -15.63860 -15.37958 -14.95753 -14.32172 -14.20653 -14.18203 -13.84103 -13.73506 -13.61627 -13.40687 -12.68514 -12.45348 -12.21446 -11.98665 -11.89452 -11.79795 -11.52952 -11.15228 -11.04244 -10.89355 -10.87386 -10.84567 -10.70156 -10.24432 -9.98059 -9.80185 -9.65846 -9.21353 -9.16954 -8.63806 -8.54268 -6.05256 -4.03824 2.80088 3.32669 3.34225 3.40106 3.44930 4.18201 4.21456 4.34721 4.45759 4.51591 4.89632 4.99566 5.05053 5.11158 5.14371 5.26380 5.28989 5.30736 5.43847 5.53803 5.56807 5.60112 5.63569 5.71022 5.72147 5.84656 5.89131 5.98502 6.02942 6.06851 6.11640 6.41450 6.49340 6.52680 6.72831 6.85183 7.05239 7.25384 7.38635 7.77154 8.14331 8.51423 8.74492 8.98612 9.57132 11.07986 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053460 B = 0.002622 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.627645 B =10674.295309 C =10896.159931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.161 3.839 7 H 0.094 0.906 8 N -0.744 5.744 9 C 0.701 3.299 10 O -0.594 6.594 11 N -0.742 5.742 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.122 4.122 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.394 0.606 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 24.525 -10.514 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.175 4.175 6 C 0.055 3.945 7 H 0.112 0.888 8 N -0.399 5.399 9 C 0.400 3.600 10 O -0.473 6.473 11 N -0.397 5.397 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.559 4.559 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.188 1.188 23 C -0.160 4.160 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.228 0.772 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.805 23.717 -11.056 29.133 hybrid contribution 0.250 -0.293 0.125 0.405 sum -12.555 23.424 -10.931 28.737 Atomic orbital electron populations 1.21942 0.94145 1.02048 1.01662 1.21097 0.95698 0.95260 0.94749 1.21913 1.00852 0.95113 1.01691 1.22250 0.99602 0.96591 0.96800 1.22766 0.99712 0.98290 0.96773 1.21744 0.91787 0.91923 0.89061 0.88809 1.45127 1.39462 1.04956 1.50359 1.16033 0.81632 0.81712 0.80588 1.90906 1.44135 1.64920 1.47289 1.45342 1.37308 1.08512 1.48516 1.21501 1.00196 0.76687 1.00650 1.21702 0.96166 0.99493 0.97705 1.19504 0.97690 0.90592 0.97133 1.21099 1.16352 0.92884 1.25598 0.91032 1.25032 0.94955 0.98636 0.94908 1.69912 1.31283 1.16121 1.36935 0.86771 0.81654 0.80998 0.79857 1.20250 1.21392 1.18848 1.22749 1.01532 0.94215 0.97493 0.92652 0.92606 0.92313 0.92544 0.92625 0.92680 0.91465 0.91550 0.91441 0.91095 0.77237 0.77208 0.92015 0.92038 0.92189 0.92154 0.96282 0.96719 0.92715 0.90933 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.14 37.16 0.30 -0.58 16 2 C -0.07 -0.44 0.94 -153.39 -0.14 -0.59 16 3 C -0.14 -0.77 8.16 37.16 0.30 -0.47 16 4 C -0.11 -0.84 6.11 -25.61 -0.16 -0.99 16 5 C -0.14 -1.28 6.52 -25.07 -0.16 -1.44 16 6 C 0.16 1.58 3.22 -65.94 -0.21 1.37 16 7 H 0.09 1.13 7.62 -51.93 -0.40 0.73 16 8 N -0.74 -7.94 5.20 -56.73 -0.30 -8.24 16 9 C 0.70 10.51 8.57 -86.92 -0.74 9.76 16 10 O -0.59 -11.45 16.03 5.29 0.08 -11.36 16 11 N -0.74 -10.49 5.56 -65.22 -0.36 -10.85 16 12 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 13 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 14 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 C -0.12 -0.87 5.51 -25.07 -0.14 -1.00 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.49 7.67 -51.93 -0.40 0.10 16 31 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.39 3.08 8.56 -40.82 -0.35 2.73 16 35 H 0.39 4.43 8.49 -40.82 -0.35 4.08 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.07 0.51 7.84 -51.93 -0.41 0.11 16 44 H 0.07 0.45 7.73 -51.93 -0.40 0.05 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -33.15 350.61 -8.97 -42.12 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.12 Total: 0.54 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.66 Total: -7.60 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.12 Total: -46.19 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.15 -8.97 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351833977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.576 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds