Wall clock time and date at job start Mon Mar 30 2020 01:37:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 110.01825 * 2 1
4 4 C 1.53871 * 110.03011 * 238.55502 * 2 1 3
5 5 C 1.54269 * 106.59813 * 240.71720 * 4 2 1
6 6 C 1.54885 * 104.19677 * 23.61322 * 5 4 2
7 7 H 1.09002 * 110.75709 * 80.37016 * 6 5 4
8 8 N 1.46499 * 110.91190 * 203.66950 * 6 5 4
9 9 C 1.34776 * 119.99949 * 270.94975 * 8 6 5
10 10 O 1.21585 * 120.00211 * 0.02562 * 9 8 6
11 11 N 1.34774 * 119.99928 * 180.02562 * 9 8 6
12 12 C 1.46509 * 119.99804 * 180.02562 * 11 9 8
13 13 C 1.52999 * 109.46799 * 179.97438 * 12 11 9
14 14 C 1.52999 * 109.47201 * 180.02562 * 13 12 11
15 15 C 1.50698 * 109.47634 * 180.02562 * 14 13 12
16 16 H 1.07999 * 119.99755 * 359.97438 * 15 14 13
17 17 C 1.37878 * 120.00235 * 180.02562 * 15 14 13
18 18 N 1.31512 * 120.00012 * 179.97438 * 17 15 14
19 19 Si 1.86800 * 119.99876 * 359.97438 * 17 15 14
20 20 H 1.48499 * 109.47124 * 89.99972 * 19 17 15
21 21 H 1.48494 * 109.47067 * 210.00018 * 19 17 15
22 22 H 1.48505 * 109.47253 * 330.00160 * 19 17 15
23 23 C 1.54271 * 110.03040 * 121.39213 * 2 1 3
24 24 H 1.09004 * 109.47207 * 298.61264 * 1 2 3
25 25 H 1.09001 * 109.46788 * 58.60613 * 1 2 3
26 26 H 1.08992 * 109.47400 * 178.60690 * 1 2 3
27 27 H 1.09006 * 109.46861 * 181.38691 * 3 2 1
28 28 H 1.08994 * 109.47236 * 301.38963 * 3 2 1
29 29 H 1.09006 * 109.47062 * 61.39406 * 3 2 1
30 30 H 1.09000 * 110.03307 * 0.02562 * 4 2 1
31 31 H 1.08999 * 110.03179 * 121.38860 * 4 2 1
32 32 H 1.09002 * 110.48538 * 264.93327 * 5 4 2
33 33 H 1.08996 * 110.48433 * 142.29362 * 5 4 2
34 34 H 0.96993 * 120.00129 * 90.95634 * 8 6 5
35 35 H 0.97001 * 120.00097 * 359.97438 * 11 9 8
36 36 H 1.08999 * 109.46772 * 299.99996 * 12 11 9
37 37 H 1.08996 * 109.47080 * 60.00526 * 12 11 9
38 38 H 1.08996 * 109.47353 * 300.00124 * 13 12 11
39 39 H 1.09004 * 109.47358 * 60.00172 * 13 12 11
40 40 H 1.09005 * 109.47163 * 300.00481 * 14 13 12
41 41 H 1.09004 * 109.46838 * 59.99836 * 14 13 12
42 42 H 0.96996 * 119.99994 * 180.02562 * 18 17 15
43 43 H 1.09002 * 110.48367 * 336.99535 * 23 2 1
44 44 H 1.09002 * 110.59675 * 214.40649 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0538 1.4376 0.0000
4 6 2.0570 -0.7542 -1.2333
5 6 2.8874 -1.9411 -0.7026
6 6 2.3279 -2.1899 0.7201
7 1 1.4029 -2.7649 0.6764
8 7 3.3186 -2.8671 1.5605
9 6 3.3715 -4.2135 1.5880
10 8 2.5973 -4.8662 0.9150
11 7 4.2825 -4.8365 2.3615
12 6 4.3404 -6.3001 2.3909
13 6 5.4540 -6.7475 3.3399
14 6 5.5149 -8.2760 3.3702
15 6 6.6113 -8.7167 4.3053
16 1 7.2056 -7.9803 4.8257
17 6 6.8564 -10.0601 4.4958
18 7 7.8136 -10.4447 5.3115
19 14 5.8290 -11.3338 3.5951
20 1 6.4684 -11.6556 2.2941
21 1 5.7348 -12.5660 4.4185
22 1 4.4668 -10.7925 3.3567
23 6 2.0584 -0.7550 1.2372
24 1 -0.3634 0.4921 0.9022
25 1 -0.3633 0.5353 -0.8772
26 1 -0.3634 -1.0273 -0.0250
27 1 3.1435 1.4272 -0.0249
28 1 1.6752 1.9622 -0.8772
29 1 1.7158 1.9474 0.9023
30 1 1.2228 -1.1198 -1.8321
31 1 2.6860 -0.0960 -1.8328
32 1 3.9439 -1.6770 -0.6563
33 1 2.7400 -2.8203 -1.3296
34 1 3.9364 -2.3464 2.0972
35 1 4.9004 -4.3158 2.8982
36 1 3.3857 -6.6945 2.7389
37 1 4.5451 -6.6758 1.3884
38 1 6.4085 -6.3531 2.9915
39 1 5.2498 -6.3717 4.3425
40 1 4.5603 -8.6708 3.7183
41 1 5.7193 -8.6513 2.3674
42 1 7.9863 -11.3897 5.4452
43 1 1.3060 -0.7687 2.0258
44 1 2.9807 -0.3003 1.5989
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000351833977.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:37:48
Heat of formation + Delta-G solvation = -68.691426 kcal
Electronic energy + Delta-G solvation = -20176.142494 eV
Core-core repulsion = 17126.867314 eV
Total energy + Delta-G solvation = -3049.275180 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.23908 -38.91428 -35.59768 -34.43363 -33.27359 -31.69139 -30.88892 -28.70865
-27.67117 -26.92564 -24.45801 -22.88606 -21.17687 -20.70946 -20.28955 -19.07294
-18.08549 -16.84900 -16.42807 -15.63860 -15.37958 -14.95753 -14.32172 -14.20653
-14.18203 -13.84103 -13.73506 -13.61627 -13.40687 -12.68514 -12.45348 -12.21446
-11.98665 -11.89452 -11.79795 -11.52952 -11.15228 -11.04244 -10.89355 -10.87386
-10.84567 -10.70156 -10.24432 -9.98059 -9.80185 -9.65846 -9.21353 -9.16954
-8.63806 -8.54268 -6.05256 -4.03824 2.80088 3.32669 3.34225 3.40106
3.44930 4.18201 4.21456 4.34721 4.45759 4.51591 4.89632 4.99566
5.05053 5.11158 5.14371 5.26380 5.28989 5.30736 5.43847 5.53803
5.56807 5.60112 5.63569 5.71022 5.72147 5.84656 5.89131 5.98502
6.02942 6.06851 6.11640 6.41450 6.49340 6.52680 6.72831 6.85183
7.05239 7.25384 7.38635 7.77154 8.14331 8.51423 8.74492 8.98612
9.57132 11.07986
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.053460 B = 0.002622 C = 0.002569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.627645 B =10674.295309 C =10896.159931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.068 4.068
3 C -0.138 4.138
4 C -0.114 4.114
5 C -0.136 4.136
6 C 0.161 3.839
7 H 0.094 0.906
8 N -0.744 5.744
9 C 0.701 3.299
10 O -0.594 6.594
11 N -0.742 5.742
12 C 0.133 3.867
13 C -0.113 4.113
14 C -0.011 4.011
15 C -0.521 4.521
16 H 0.072 0.928
17 C 0.066 3.934
18 N -0.904 5.904
19 Si 0.880 3.120
20 H -0.277 1.277
21 H -0.288 1.288
22 H -0.264 1.264
23 C -0.122 4.122
24 H 0.054 0.946
25 H 0.055 0.945
26 H 0.058 0.942
27 H 0.055 0.945
28 H 0.055 0.945
29 H 0.054 0.946
30 H 0.067 0.933
31 H 0.066 0.934
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.394 0.606
35 H 0.395 0.605
36 H 0.061 0.939
37 H 0.061 0.939
38 H 0.059 0.941
39 H 0.060 0.940
40 H 0.019 0.981
41 H 0.015 0.985
42 H 0.263 0.737
43 H 0.072 0.928
44 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.165 24.525 -10.514 29.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.068 4.068
3 C -0.196 4.196
4 C -0.152 4.152
5 C -0.175 4.175
6 C 0.055 3.945
7 H 0.112 0.888
8 N -0.399 5.399
9 C 0.400 3.600
10 O -0.473 6.473
11 N -0.397 5.397
12 C 0.010 3.990
13 C -0.151 4.151
14 C -0.049 4.049
15 C -0.559 4.559
16 H 0.090 0.910
17 C -0.135 4.135
18 N -0.543 5.543
19 Si 0.707 3.293
20 H -0.202 1.202
21 H -0.214 1.214
22 H -0.188 1.188
23 C -0.160 4.160
24 H 0.073 0.927
25 H 0.074 0.926
26 H 0.077 0.923
27 H 0.075 0.925
28 H 0.074 0.926
29 H 0.073 0.927
30 H 0.085 0.915
31 H 0.084 0.916
32 H 0.086 0.914
33 H 0.089 0.911
34 H 0.228 0.772
35 H 0.228 0.772
36 H 0.080 0.920
37 H 0.080 0.920
38 H 0.078 0.922
39 H 0.078 0.922
40 H 0.037 0.963
41 H 0.033 0.967
42 H 0.073 0.927
43 H 0.091 0.909
44 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -12.805 23.717 -11.056 29.133
hybrid contribution 0.250 -0.293 0.125 0.405
sum -12.555 23.424 -10.931 28.737
Atomic orbital electron populations
1.21942 0.94145 1.02048 1.01662 1.21097 0.95698 0.95260 0.94749
1.21913 1.00852 0.95113 1.01691 1.22250 0.99602 0.96591 0.96800
1.22766 0.99712 0.98290 0.96773 1.21744 0.91787 0.91923 0.89061
0.88809 1.45127 1.39462 1.04956 1.50359 1.16033 0.81632 0.81712
0.80588 1.90906 1.44135 1.64920 1.47289 1.45342 1.37308 1.08512
1.48516 1.21501 1.00196 0.76687 1.00650 1.21702 0.96166 0.99493
0.97705 1.19504 0.97690 0.90592 0.97133 1.21099 1.16352 0.92884
1.25598 0.91032 1.25032 0.94955 0.98636 0.94908 1.69912 1.31283
1.16121 1.36935 0.86771 0.81654 0.80998 0.79857 1.20250 1.21392
1.18848 1.22749 1.01532 0.94215 0.97493 0.92652 0.92606 0.92313
0.92544 0.92625 0.92680 0.91465 0.91550 0.91441 0.91095 0.77237
0.77208 0.92015 0.92038 0.92189 0.92154 0.96282 0.96719 0.92715
0.90933 0.90935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.88 8.14 37.16 0.30 -0.58 16
2 C -0.07 -0.44 0.94 -153.39 -0.14 -0.59 16
3 C -0.14 -0.77 8.16 37.16 0.30 -0.47 16
4 C -0.11 -0.84 6.11 -25.61 -0.16 -0.99 16
5 C -0.14 -1.28 6.52 -25.07 -0.16 -1.44 16
6 C 0.16 1.58 3.22 -65.94 -0.21 1.37 16
7 H 0.09 1.13 7.62 -51.93 -0.40 0.73 16
8 N -0.74 -7.94 5.20 -56.73 -0.30 -8.24 16
9 C 0.70 10.51 8.57 -86.92 -0.74 9.76 16
10 O -0.59 -11.45 16.03 5.29 0.08 -11.36 16
11 N -0.74 -10.49 5.56 -65.22 -0.36 -10.85 16
12 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16
13 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16
14 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16
15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16
16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16
17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16
18 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16
19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16
20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16
23 C -0.12 -0.87 5.51 -25.07 -0.14 -1.00 16
24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16
26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
30 H 0.07 0.49 7.67 -51.93 -0.40 0.10 16
31 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16
32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
34 H 0.39 3.08 8.56 -40.82 -0.35 2.73 16
35 H 0.39 4.43 8.49 -40.82 -0.35 4.08 16
36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16
41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16
42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
43 H 0.07 0.51 7.84 -51.93 -0.41 0.11 16
44 H 0.07 0.45 7.73 -51.93 -0.40 0.05 16
LS Contribution 350.61 15.07 5.28 5.28
Total: -1.00 -33.15 350.61 -8.97 -42.12
By element:
Atomic # 1 Polarization: 8.66 SS G_CDS: -8.12 Total: 0.54 kcal
Atomic # 6 Polarization: -5.94 SS G_CDS: -1.66 Total: -7.60 kcal
Atomic # 7 Polarization: -46.31 SS G_CDS: 0.12 Total: -46.19 kcal
Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.36 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -33.15 -8.97 -42.12 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000351833977.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.576 kcal
(2) G-P(sol) polarization free energy of solvation -33.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.691 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds