Wall clock time and date at job start Mon Mar 30 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.01825 * 2 1 4 4 C 1.53871 * 110.03011 * 238.55502 * 2 1 3 5 5 C 1.54269 * 106.59813 * 240.71720 * 4 2 1 6 6 C 1.54885 * 104.19677 * 23.61322 * 5 4 2 7 7 H 1.09002 * 110.75709 * 80.37016 * 6 5 4 8 8 N 1.46499 * 110.91190 * 203.66950 * 6 5 4 9 9 C 1.34776 * 119.99949 * 270.94975 * 8 6 5 10 10 O 1.21585 * 120.00211 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99928 * 180.02562 * 9 8 6 12 12 C 1.46509 * 119.99804 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46799 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47634 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99755 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00235 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00012 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99876 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47124 * 89.99972 * 19 17 15 21 21 H 1.48494 * 109.47067 * 210.00018 * 19 17 15 22 22 H 1.48505 * 109.47253 * 330.00160 * 19 17 15 23 23 C 1.54271 * 110.03040 * 121.39213 * 2 1 3 24 24 H 1.09004 * 109.47207 * 298.61264 * 1 2 3 25 25 H 1.09001 * 109.46788 * 58.60613 * 1 2 3 26 26 H 1.08992 * 109.47400 * 178.60690 * 1 2 3 27 27 H 1.09006 * 109.46861 * 181.38691 * 3 2 1 28 28 H 1.08994 * 109.47236 * 301.38963 * 3 2 1 29 29 H 1.09006 * 109.47062 * 61.39406 * 3 2 1 30 30 H 1.09000 * 110.03307 * 0.02562 * 4 2 1 31 31 H 1.08999 * 110.03179 * 121.38860 * 4 2 1 32 32 H 1.09002 * 110.48538 * 264.93327 * 5 4 2 33 33 H 1.08996 * 110.48433 * 142.29362 * 5 4 2 34 34 H 0.96993 * 120.00129 * 90.95634 * 8 6 5 35 35 H 0.97001 * 120.00097 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.46772 * 299.99996 * 12 11 9 37 37 H 1.08996 * 109.47080 * 60.00526 * 12 11 9 38 38 H 1.08996 * 109.47353 * 300.00124 * 13 12 11 39 39 H 1.09004 * 109.47358 * 60.00172 * 13 12 11 40 40 H 1.09005 * 109.47163 * 300.00481 * 14 13 12 41 41 H 1.09004 * 109.46838 * 59.99836 * 14 13 12 42 42 H 0.96996 * 119.99994 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.48367 * 336.99535 * 23 2 1 44 44 H 1.09002 * 110.59675 * 214.40649 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0570 -0.7542 -1.2333 5 6 2.8874 -1.9411 -0.7026 6 6 2.3279 -2.1899 0.7201 7 1 1.4029 -2.7649 0.6764 8 7 3.3186 -2.8671 1.5605 9 6 3.3715 -4.2135 1.5880 10 8 2.5973 -4.8662 0.9150 11 7 4.2825 -4.8365 2.3615 12 6 4.3404 -6.3001 2.3909 13 6 5.4540 -6.7475 3.3399 14 6 5.5149 -8.2760 3.3702 15 6 6.6113 -8.7167 4.3053 16 1 7.2056 -7.9803 4.8257 17 6 6.8564 -10.0601 4.4958 18 7 7.8136 -10.4447 5.3115 19 14 5.8290 -11.3338 3.5951 20 1 6.4684 -11.6556 2.2941 21 1 5.7348 -12.5660 4.4185 22 1 4.4668 -10.7925 3.3567 23 6 2.0584 -0.7550 1.2372 24 1 -0.3634 0.4921 0.9022 25 1 -0.3633 0.5353 -0.8772 26 1 -0.3634 -1.0273 -0.0250 27 1 3.1435 1.4272 -0.0249 28 1 1.6752 1.9622 -0.8772 29 1 1.7158 1.9474 0.9023 30 1 1.2228 -1.1198 -1.8321 31 1 2.6860 -0.0960 -1.8328 32 1 3.9439 -1.6770 -0.6563 33 1 2.7400 -2.8203 -1.3296 34 1 3.9364 -2.3464 2.0972 35 1 4.9004 -4.3158 2.8982 36 1 3.3857 -6.6945 2.7389 37 1 4.5451 -6.6758 1.3884 38 1 6.4085 -6.3531 2.9915 39 1 5.2498 -6.3717 4.3425 40 1 4.5603 -8.6708 3.7183 41 1 5.7193 -8.6513 2.3674 42 1 7.9863 -11.3897 5.4452 43 1 1.3060 -0.7687 2.0258 44 1 2.9807 -0.3003 1.5989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351833977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:47 Heat of formation + Delta-G solvation = -90.729376 kcal Electronic energy + Delta-G solvation = -20177.098131 eV Core-core repulsion = 17126.867314 eV Total energy + Delta-G solvation = -3050.230817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24793 -39.75066 -37.03652 -35.44028 -35.12100 -33.31146 -31.86180 -29.59093 -28.50327 -28.11653 -25.26946 -24.43952 -22.30533 -22.08123 -21.48830 -19.75884 -19.19767 -18.84888 -17.51825 -16.79405 -16.42161 -16.23037 -15.79740 -15.58355 -15.19469 -14.78581 -14.63400 -14.54966 -14.21647 -14.05970 -13.79544 -13.69356 -12.95638 -12.84907 -12.71511 -12.67812 -12.36195 -12.24417 -11.93155 -11.79722 -11.74032 -11.58442 -11.44196 -11.40796 -11.35858 -11.32421 -11.21708 -10.75744 -10.32547 -9.72946 -8.29045 -6.32721 1.37317 1.38934 1.50954 1.73283 2.15506 2.36835 3.06714 3.30357 3.57699 3.66826 3.88351 4.11371 4.22710 4.33848 4.35311 4.38125 4.49843 4.52179 4.57806 4.59329 4.85884 4.90371 4.91059 4.91732 4.97317 5.03820 5.04890 5.13321 5.16163 5.18769 5.27749 5.42267 5.42717 5.44374 5.53753 5.56957 5.58382 5.63833 5.66593 6.05096 6.28017 6.75162 7.13366 7.32072 7.60499 8.87304 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053460 B = 0.002622 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.627645 B =10674.295309 C =10896.159931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.110 4.110 5 C -0.134 4.134 6 C 0.155 3.845 7 H 0.068 0.932 8 N -0.725 5.725 9 C 0.697 3.303 10 O -0.640 6.640 11 N -0.733 5.733 12 C 0.147 3.853 13 C -0.098 4.098 14 C -0.013 4.013 15 C -0.529 4.529 16 H 0.038 0.962 17 C 0.004 3.996 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.248 1.248 23 C -0.112 4.112 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.411 0.589 35 H 0.411 0.589 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.266 0.734 43 H 0.075 0.925 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 26.232 -11.267 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.193 4.193 4 C -0.148 4.148 5 C -0.173 4.173 6 C 0.050 3.950 7 H 0.086 0.914 8 N -0.381 5.381 9 C 0.397 3.603 10 O -0.522 6.522 11 N -0.389 5.389 12 C 0.022 3.978 13 C -0.136 4.136 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.057 0.943 17 C -0.193 4.193 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.172 1.172 23 C -0.150 4.150 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.248 0.752 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.676 25.498 -11.793 31.245 hybrid contribution 0.570 -0.753 0.391 1.022 sum -13.106 24.745 -11.403 30.234 Atomic orbital electron populations 1.21947 0.94037 1.01489 1.02357 1.21093 0.95800 0.95851 0.93824 1.21888 1.01029 0.94082 1.02280 1.22235 0.99353 0.95946 0.97302 1.22716 1.00395 0.98185 0.96030 1.21831 0.90509 0.93031 0.89660 0.91410 1.44985 1.39545 1.03508 1.50028 1.16200 0.81140 0.82814 0.80160 1.90879 1.45903 1.66248 1.49140 1.45055 1.37611 1.07496 1.48704 1.21127 0.98821 0.78378 0.99457 1.21465 0.97190 0.96381 0.98583 1.19470 0.95793 0.93863 0.95934 1.21459 1.17011 0.92456 1.25828 0.94349 1.25982 0.96260 1.01167 0.95867 1.70054 1.33337 1.16798 1.38897 0.85701 0.80530 0.78031 0.78677 1.19264 1.21007 1.17176 1.22721 1.02437 0.92055 0.97804 0.91965 0.91946 0.93514 0.92214 0.92138 0.92066 0.91809 0.90413 0.90886 0.93661 0.75184 0.75290 0.92877 0.92859 0.91684 0.91673 0.96114 0.96235 0.92515 0.90622 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.14 71.98 0.59 -0.96 16 2 C -0.07 -0.72 0.94 -51.46 -0.05 -0.77 16 3 C -0.14 -1.12 8.16 71.98 0.59 -0.53 16 4 C -0.11 -1.46 6.11 31.32 0.19 -1.27 16 5 C -0.13 -2.42 6.52 31.67 0.21 -2.21 16 6 C 0.16 2.92 3.22 46.28 0.15 3.07 16 7 H 0.07 1.66 7.62 -2.39 -0.02 1.65 16 8 N -0.73 -14.41 5.20 -451.67 -2.35 -16.76 16 9 C 0.70 20.28 8.57 179.06 1.53 21.81 16 10 O -0.64 -24.75 16.03 -3.98 -0.06 -24.81 16 11 N -0.73 -19.59 5.56 -478.53 -2.66 -22.25 16 12 C 0.15 4.83 5.67 86.38 0.49 5.32 16 13 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 14 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 15 C -0.53 -30.21 9.66 25.60 0.25 -29.96 16 16 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 17 C 0.00 0.24 5.47 84.66 0.46 0.70 16 18 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 19 Si 0.95 44.75 27.47 68.60 1.88 46.63 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 23 C -0.11 -1.35 5.51 31.67 0.17 -1.18 16 24 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.89 7.67 -2.39 -0.02 0.87 16 31 H 0.08 0.87 7.67 -2.39 -0.02 0.85 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.41 5.37 8.56 -92.71 -0.79 4.58 16 35 H 0.41 8.29 8.49 -92.71 -0.79 7.50 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.02 0.95 7.20 -2.38 -0.02 0.93 16 41 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 42 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.08 0.90 7.84 -2.39 -0.02 0.88 16 44 H 0.09 0.81 7.73 -2.39 -0.02 0.80 16 Total: -1.00 -72.29 350.61 1.30 -70.99 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.67 Total: 15.33 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.86 Total: -9.86 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.71 Total: -98.28 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -72.29 1.30 -70.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351833977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.744 kcal (2) G-P(sol) polarization free energy of solvation -72.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds