Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.53873 * 110.03254 * 238.56230 * 2 1 3 5 5 C 1.54271 * 106.59672 * 240.71324 * 4 2 1 6 6 C 1.54887 * 104.19554 * 336.38739 * 5 4 2 7 7 H 1.08996 * 110.75911 * 279.62375 * 6 5 4 8 8 N 1.46499 * 110.75453 * 156.25620 * 6 5 4 9 9 C 1.34782 * 120.00117 * 91.67471 * 8 6 5 10 10 O 1.21590 * 119.99567 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00029 * 179.97438 * 9 8 6 12 12 C 1.46501 * 120.00096 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47513 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47296 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47112 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99893 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00064 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46856 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.46901 * 209.99978 * 19 17 15 22 22 H 1.48496 * 109.47166 * 330.00145 * 19 17 15 23 23 C 1.54266 * 110.03511 * 121.39423 * 2 1 3 24 24 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 25 25 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 26 26 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 27 27 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 28 28 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 29 29 H 1.09005 * 109.47116 * 300.70023 * 3 2 1 30 30 H 1.09004 * 110.03436 * 359.97438 * 4 2 1 31 31 H 1.08994 * 110.03897 * 121.42847 * 4 2 1 32 32 H 1.08997 * 110.48569 * 217.70882 * 5 4 2 33 33 H 1.08998 * 110.48772 * 95.06851 * 5 4 2 34 34 H 0.97003 * 120.00395 * 271.67063 * 8 6 5 35 35 H 0.97003 * 120.00484 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47168 * 300.00559 * 12 11 9 37 37 H 1.09004 * 109.46807 * 60.00475 * 12 11 9 38 38 H 1.08999 * 109.46627 * 300.00585 * 13 12 11 39 39 H 1.09000 * 109.46869 * 59.99916 * 13 12 11 40 40 H 1.09002 * 109.46948 * 300.00267 * 14 13 12 41 41 H 1.08996 * 109.47145 * 59.99709 * 14 13 12 42 42 H 0.96997 * 119.99686 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.48098 * 261.57335 * 23 2 1 44 44 H 1.08992 * 110.48685 * 24.07836 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7540 -1.2334 5 6 2.8875 -1.9409 -0.7027 6 6 3.3137 -1.5004 0.7197 7 1 4.1710 -0.8288 0.6754 8 7 3.6079 -2.6655 1.5577 9 6 4.8649 -3.1471 1.6250 10 8 5.7546 -2.6148 0.9897 11 7 5.1356 -4.2186 2.3963 12 6 6.5018 -4.7425 2.4690 13 6 6.5352 -5.9518 3.4057 14 6 7.9621 -6.4985 3.4821 15 6 7.9949 -7.6899 4.4043 16 1 7.0887 -8.0235 4.8879 17 6 9.1818 -8.3540 4.6306 18 7 10.2854 -7.9474 4.0421 19 14 9.2226 -9.8304 5.7743 20 1 8.9664 -11.0679 4.9943 21 1 10.5568 -9.9196 6.4200 22 1 8.1769 -9.6775 6.8175 23 6 2.0585 -0.7550 1.2371 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 -1.0274 -0.0250 26 1 -0.3634 0.5353 -0.8773 27 1 1.7055 1.9511 0.8962 28 1 3.1436 1.4273 -0.0126 29 1 1.6851 1.9586 -0.8837 30 1 1.2229 -1.1203 -1.8318 31 1 2.6866 -0.0961 -1.8325 32 1 3.7637 -2.1042 -1.3301 33 1 2.2772 -2.8428 -0.6559 34 1 2.8980 -3.0903 2.0642 35 1 4.4258 -4.6430 2.9033 36 1 6.8284 -5.0449 1.4740 37 1 7.1678 -3.9685 2.8504 38 1 6.2084 -5.6496 4.4007 39 1 5.8692 -6.7256 3.0240 40 1 8.2893 -6.8004 2.4872 41 1 8.6278 -5.7245 3.8640 42 1 11.1203 -8.4149 4.2011 43 1 2.3297 -0.0527 2.0254 44 1 1.3134 -1.4636 1.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351833978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -72.199513 kcal Electronic energy + Delta-G solvation = -20120.416760 eV Core-core repulsion = 17070.989458 eV Total energy + Delta-G solvation = -3049.427302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18475 -38.86422 -35.47624 -34.37880 -33.27096 -31.58152 -30.69795 -28.61551 -27.64469 -26.52513 -24.42758 -23.04384 -21.12358 -20.69615 -20.35220 -19.03994 -18.01351 -16.64407 -16.18110 -15.56415 -15.29907 -14.84596 -14.42524 -14.24568 -14.09019 -13.82285 -13.74050 -13.59321 -13.36731 -12.41182 -12.27313 -12.14594 -11.85589 -11.79132 -11.68573 -11.46946 -11.11634 -10.89093 -10.86673 -10.81690 -10.69773 -10.67195 -10.57587 -10.04228 -9.83634 -9.41899 -9.11010 -9.10417 -8.55472 -8.35783 -6.00414 -4.03446 2.86606 3.31577 3.37872 3.40729 3.40903 4.22167 4.25215 4.38384 4.45576 4.56554 4.93007 5.02520 5.07957 5.14378 5.17255 5.29486 5.33287 5.35267 5.46454 5.57502 5.61919 5.65666 5.71614 5.75435 5.84587 5.87415 5.91695 6.02425 6.06112 6.14645 6.21800 6.56938 6.58081 6.65267 6.85156 7.05145 7.13808 7.65652 7.78762 7.98724 8.21077 8.39664 8.81507 9.03316 9.60564 11.10900 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.058276 B = 0.002478 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.355676 B =11298.790236 C =11473.235247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.160 3.840 7 H 0.096 0.904 8 N -0.745 5.745 9 C 0.700 3.300 10 O -0.594 6.594 11 N -0.743 5.743 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.122 4.122 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.393 0.607 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.243 15.966 -7.574 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.176 4.176 6 C 0.054 3.946 7 H 0.114 0.886 8 N -0.400 5.400 9 C 0.400 3.600 10 O -0.472 6.472 11 N -0.397 5.397 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.160 4.160 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.227 0.773 35 H 0.226 0.774 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.178 16.417 -8.170 27.265 hybrid contribution -0.555 -1.305 1.091 1.789 sum -20.732 15.112 -7.079 26.614 Atomic orbital electron populations 1.21913 0.94250 1.01724 1.01667 1.21100 0.95488 0.95455 0.94791 1.21940 1.01285 0.94935 1.01633 1.22250 0.99374 0.96815 0.96798 1.22775 0.99920 0.98055 0.96829 1.21748 0.97509 0.86314 0.88997 0.88613 1.45133 1.08830 1.34058 1.51947 1.16054 0.82817 0.80778 0.80400 1.90911 1.45391 1.61726 1.49142 1.45393 1.12593 1.31797 1.49887 1.21500 0.80223 0.96405 1.00691 1.21886 1.02184 0.94541 0.97190 1.19029 0.89131 0.95785 0.97462 1.21205 0.94371 1.13096 1.27335 0.92669 1.25036 0.95736 0.97576 0.96175 1.69969 0.99269 1.40631 1.43403 0.86580 0.77313 0.83028 0.80974 1.20670 1.21214 1.19917 1.22749 0.96660 0.99131 0.97464 0.92704 0.92567 0.92639 0.92669 0.92284 0.92621 0.91573 0.91450 0.91109 0.91464 0.77311 0.77383 0.92013 0.92004 0.92800 0.92802 0.96251 0.96236 0.92935 0.90961 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.15 37.16 0.30 -0.49 16 2 C -0.07 -0.46 0.94 -153.39 -0.14 -0.60 16 3 C -0.14 -0.92 8.15 37.16 0.30 -0.62 16 4 C -0.11 -0.86 6.11 -25.61 -0.16 -1.02 16 5 C -0.14 -1.31 6.51 -25.07 -0.16 -1.48 16 6 C 0.16 1.64 3.27 -65.94 -0.22 1.43 16 7 H 0.10 1.20 7.55 -51.93 -0.39 0.81 16 8 N -0.74 -8.30 5.18 -56.73 -0.29 -8.59 16 9 C 0.70 10.96 8.57 -86.92 -0.74 10.21 16 10 O -0.59 -11.90 15.99 5.29 0.08 -11.82 16 11 N -0.74 -11.04 5.56 -65.22 -0.36 -11.40 16 12 C 0.14 2.46 5.67 -4.04 -0.02 2.44 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.12 -0.91 5.53 -25.07 -0.14 -1.05 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 31 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.39 3.23 8.58 -40.82 -0.35 2.88 16 35 H 0.39 4.63 8.49 -40.82 -0.35 4.29 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 44 H 0.07 0.47 7.73 -51.93 -0.40 0.07 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -32.78 354.16 -9.34 -42.13 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.15 Total: 0.75 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.67 Total: -6.70 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.08 Total: -46.26 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.78 -9.34 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351833978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.073 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds