Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.53873 * 110.03254 * 238.56230 * 2 1 3 5 5 C 1.54271 * 106.59672 * 240.71324 * 4 2 1 6 6 C 1.54887 * 104.19554 * 336.38739 * 5 4 2 7 7 H 1.08996 * 110.75911 * 279.62375 * 6 5 4 8 8 N 1.46499 * 110.75453 * 156.25620 * 6 5 4 9 9 C 1.34782 * 120.00117 * 91.67471 * 8 6 5 10 10 O 1.21590 * 119.99567 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00029 * 179.97438 * 9 8 6 12 12 C 1.46501 * 120.00096 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47513 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47296 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47112 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99893 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00064 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46856 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.46901 * 209.99978 * 19 17 15 22 22 H 1.48496 * 109.47166 * 330.00145 * 19 17 15 23 23 C 1.54266 * 110.03511 * 121.39423 * 2 1 3 24 24 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 25 25 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 26 26 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 27 27 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 28 28 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 29 29 H 1.09005 * 109.47116 * 300.70023 * 3 2 1 30 30 H 1.09004 * 110.03436 * 359.97438 * 4 2 1 31 31 H 1.08994 * 110.03897 * 121.42847 * 4 2 1 32 32 H 1.08997 * 110.48569 * 217.70882 * 5 4 2 33 33 H 1.08998 * 110.48772 * 95.06851 * 5 4 2 34 34 H 0.97003 * 120.00395 * 271.67063 * 8 6 5 35 35 H 0.97003 * 120.00484 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47168 * 300.00559 * 12 11 9 37 37 H 1.09004 * 109.46807 * 60.00475 * 12 11 9 38 38 H 1.08999 * 109.46627 * 300.00585 * 13 12 11 39 39 H 1.09000 * 109.46869 * 59.99916 * 13 12 11 40 40 H 1.09002 * 109.46948 * 300.00267 * 14 13 12 41 41 H 1.08996 * 109.47145 * 59.99709 * 14 13 12 42 42 H 0.96997 * 119.99686 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.48098 * 261.57335 * 23 2 1 44 44 H 1.08992 * 110.48685 * 24.07836 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7540 -1.2334 5 6 2.8875 -1.9409 -0.7027 6 6 3.3137 -1.5004 0.7197 7 1 4.1710 -0.8288 0.6754 8 7 3.6079 -2.6655 1.5577 9 6 4.8649 -3.1471 1.6250 10 8 5.7546 -2.6148 0.9897 11 7 5.1356 -4.2186 2.3963 12 6 6.5018 -4.7425 2.4690 13 6 6.5352 -5.9518 3.4057 14 6 7.9621 -6.4985 3.4821 15 6 7.9949 -7.6899 4.4043 16 1 7.0887 -8.0235 4.8879 17 6 9.1818 -8.3540 4.6306 18 7 10.2854 -7.9474 4.0421 19 14 9.2226 -9.8304 5.7743 20 1 8.9664 -11.0679 4.9943 21 1 10.5568 -9.9196 6.4200 22 1 8.1769 -9.6775 6.8175 23 6 2.0585 -0.7550 1.2371 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 -1.0274 -0.0250 26 1 -0.3634 0.5353 -0.8773 27 1 1.7055 1.9511 0.8962 28 1 3.1436 1.4273 -0.0126 29 1 1.6851 1.9586 -0.8837 30 1 1.2229 -1.1203 -1.8318 31 1 2.6866 -0.0961 -1.8325 32 1 3.7637 -2.1042 -1.3301 33 1 2.2772 -2.8428 -0.6559 34 1 2.8980 -3.0903 2.0642 35 1 4.4258 -4.6430 2.9033 36 1 6.8284 -5.0449 1.4740 37 1 7.1678 -3.9685 2.8504 38 1 6.2084 -5.6496 4.4007 39 1 5.8692 -6.7256 3.0240 40 1 8.2893 -6.8004 2.4872 41 1 8.6278 -5.7245 3.8640 42 1 11.1203 -8.4149 4.2011 43 1 2.3297 -0.0527 2.0254 44 1 1.3134 -1.4636 1.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351833978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -93.459927 kcal Electronic energy + Delta-G solvation = -20121.338681 eV Core-core repulsion = 17070.989458 eV Total energy + Delta-G solvation = -3050.349223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25363 -39.75343 -37.00795 -35.44921 -35.16780 -33.09215 -31.79329 -29.48132 -28.26378 -28.10890 -25.36862 -24.63899 -22.31354 -22.20050 -21.51515 -19.73864 -19.15373 -18.52181 -17.47903 -16.77656 -16.51815 -16.26209 -15.85346 -15.53901 -15.25771 -14.66658 -14.55396 -14.25731 -14.21798 -14.04547 -13.73195 -13.58450 -12.94505 -12.84690 -12.72636 -12.54012 -12.36841 -12.35763 -12.25264 -11.78836 -11.66467 -11.61297 -11.43927 -11.40421 -11.34750 -11.27979 -11.11840 -10.54944 -10.33599 -9.73510 -8.18917 -6.30518 1.42009 1.43659 1.54553 1.72302 2.14598 2.42480 3.14751 3.30595 3.58342 3.66849 3.88459 4.17556 4.23645 4.34090 4.35766 4.38168 4.50191 4.56624 4.57989 4.59563 4.86458 4.91756 4.95267 4.96320 4.99884 5.04372 5.13248 5.16072 5.17487 5.19234 5.28072 5.42525 5.44581 5.47557 5.55077 5.58814 5.64570 5.71611 5.84859 6.04749 6.23172 6.86885 7.14214 7.39016 7.60357 8.93310 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.058276 B = 0.002478 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.355676 B =11298.790236 C =11473.235247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.110 4.110 5 C -0.135 4.135 6 C 0.154 3.846 7 H 0.067 0.933 8 N -0.724 5.724 9 C 0.696 3.304 10 O -0.642 6.642 11 N -0.730 5.730 12 C 0.150 3.850 13 C -0.099 4.099 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.260 1.260 23 C -0.112 4.112 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.412 0.588 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.068 0.932 40 H -0.009 1.009 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.074 0.926 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.238 15.567 -6.525 29.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.148 4.148 5 C -0.174 4.174 6 C 0.048 3.952 7 H 0.085 0.915 8 N -0.379 5.379 9 C 0.396 3.604 10 O -0.524 6.524 11 N -0.386 5.386 12 C 0.025 3.975 13 C -0.137 4.137 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.184 1.184 23 C -0.150 4.150 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.249 0.751 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.261 16.018 -7.099 29.121 hybrid contribution 0.384 -1.128 0.715 1.390 sum -22.877 14.890 -6.384 28.033 Atomic orbital electron populations 1.21886 0.92847 1.02212 1.02286 1.21096 0.96492 0.95184 0.93817 1.21946 1.00451 0.95083 1.02368 1.22236 0.99344 0.95930 0.97308 1.22727 0.99318 0.99376 0.95936 1.21850 0.97898 0.85720 0.89720 0.91453 1.44964 1.07635 1.33806 1.51514 1.16233 0.83642 0.80588 0.79956 1.90885 1.47297 1.63153 1.51064 1.45026 1.11732 1.31731 1.50111 1.21064 0.81845 0.95388 0.99212 1.21581 0.98513 0.95178 0.98455 1.18948 0.92287 0.94870 0.95383 1.21678 0.94925 1.13663 1.27526 0.91455 1.26051 0.95327 1.00957 0.97934 1.70119 1.00027 1.42340 1.45120 0.85394 0.77587 0.78873 0.78855 1.19807 1.21077 1.18364 1.22718 0.95301 0.99171 0.97787 0.92063 0.92130 0.92123 0.91948 0.93633 0.91914 0.90286 0.91875 0.93763 0.90690 0.75098 0.75151 0.93704 0.93659 0.91308 0.91312 0.99013 0.98978 0.92824 0.90737 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.15 71.98 0.59 -0.57 16 2 C -0.07 -0.76 0.94 -51.46 -0.05 -0.81 16 3 C -0.14 -1.66 8.15 71.98 0.59 -1.07 16 4 C -0.11 -1.52 6.11 31.32 0.19 -1.33 16 5 C -0.13 -2.52 6.51 31.67 0.21 -2.31 16 6 C 0.15 3.06 3.27 46.28 0.15 3.21 16 7 H 0.07 1.76 7.55 -2.39 -0.02 1.74 16 8 N -0.72 -15.23 5.18 -451.67 -2.34 -17.57 16 9 C 0.70 21.63 8.57 179.05 1.53 23.16 16 10 O -0.64 -26.58 15.99 -4.00 -0.06 -26.64 16 11 N -0.73 -20.98 5.56 -478.52 -2.66 -23.64 16 12 C 0.15 5.51 5.67 86.38 0.49 6.00 16 13 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 19 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.11 -1.43 5.53 31.67 0.17 -1.26 16 24 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.08 0.91 7.67 -2.39 -0.02 0.89 16 31 H 0.06 0.93 7.67 -2.39 -0.02 0.91 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 5.67 8.58 -92.71 -0.80 4.87 16 35 H 0.41 8.71 8.49 -92.71 -0.79 7.92 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.07 0.96 7.84 -2.39 -0.02 0.94 16 44 H 0.09 0.86 7.73 -2.39 -0.02 0.84 16 Total: -1.00 -72.52 354.16 1.50 -71.02 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.62 Total: 15.46 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 4.88 Total: -7.24 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -4.72 Total: -98.59 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.52 1.50 -71.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351833978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.443 kcal (2) G-P(sol) polarization free energy of solvation -72.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds