Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 C 1.53006 * 109.46914 * 240.00285 * 2 1 3 5 5 C 1.50702 * 109.47172 * 60.00066 * 4 2 1 6 6 H 1.08002 * 120.00217 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00059 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99779 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99748 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47004 * 60.00486 * 9 7 5 11 11 H 1.48507 * 109.46521 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47160 * 299.99853 * 9 7 5 13 13 C 1.52995 * 109.47294 * 120.00472 * 2 1 3 14 14 N 1.46503 * 109.46816 * 299.99540 * 13 2 1 15 15 C 1.34778 * 119.99542 * 179.97438 * 14 13 2 16 16 O 1.21583 * 120.00349 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99378 * 180.02562 * 15 14 13 18 18 C 1.46509 * 119.99748 * 180.02562 * 17 15 14 19 19 C 1.52993 * 109.47029 * 175.11970 * 18 17 15 20 20 C 1.53002 * 115.55079 * 279.52186 * 19 18 17 21 21 C 1.53002 * 117.49727 * 133.81437 * 19 18 17 22 22 C 1.53001 * 117.49977 * 65.19237 * 19 18 17 23 23 H 1.08996 * 109.46675 * 300.00049 * 1 2 3 24 24 H 1.09007 * 109.47388 * 59.99515 * 1 2 3 25 25 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47237 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47475 * 300.00249 * 3 2 1 28 28 H 1.08995 * 109.46851 * 60.00311 * 3 2 1 29 29 H 1.08998 * 109.47184 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.46890 * 299.99880 * 4 2 1 31 31 H 0.97004 * 119.99692 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46936 * 179.97438 * 13 2 1 33 33 H 1.09001 * 109.47403 * 59.99573 * 13 2 1 34 34 H 0.97002 * 119.99836 * 0.02562 * 14 13 2 35 35 H 0.96994 * 120.00283 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.47181 * 295.12329 * 18 17 15 37 37 H 1.09004 * 109.46663 * 55.11853 * 18 17 15 38 38 H 1.09002 * 109.47273 * 64.04090 * 20 19 18 39 39 H 1.09003 * 109.47226 * 184.03739 * 20 19 18 40 40 H 1.08995 * 109.47081 * 304.03869 * 20 19 18 41 41 H 1.08992 * 117.49922 * 0.02562 * 21 19 18 42 42 H 1.09004 * 117.49899 * 145.01963 * 21 19 18 43 43 H 1.09004 * 117.50079 * 214.97691 * 22 19 18 44 44 H 1.08999 * 117.50078 * 359.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8671 -2.3807 7 6 1.8711 -0.4814 -3.7321 8 7 2.6272 -1.5507 -3.8528 9 14 1.2478 0.3989 -5.2572 10 1 1.7418 1.7992 -5.2571 11 1 1.7439 -0.3004 -6.4698 12 1 -0.2372 0.3978 -5.2573 13 6 2.0400 -0.7213 1.2491 14 7 1.5518 -0.0307 2.4453 15 6 1.8770 -0.4916 3.6694 16 8 2.5760 -1.4801 3.7809 17 7 1.4274 0.1435 4.7699 18 6 1.7813 -0.3571 6.1005 19 6 1.2506 0.6050 7.1651 20 6 2.1032 1.8512 7.4123 21 6 0.5214 -0.0020 8.3654 22 6 -0.2671 0.7509 7.2919 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1299 -0.7209 -1.2496 30 1 1.6766 -1.7489 -1.2493 31 1 2.8621 -1.8816 -4.7339 32 1 3.1300 -0.7217 1.2488 33 1 1.6767 -1.7490 1.2491 34 1 0.9938 0.7578 2.3563 35 1 0.8695 0.9319 4.6809 36 1 1.3385 -1.3421 6.2478 37 1 2.8657 -0.4299 6.1846 38 1 2.1221 2.4633 6.5105 39 1 1.6757 2.4270 8.2332 40 1 3.1191 1.5513 7.6692 41 1 0.4201 -1.0868 8.3967 42 1 0.6490 0.4863 9.3315 43 1 -0.6583 1.7346 7.5518 44 1 -0.8876 0.1618 6.6166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353926806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -32.562133 kcal Electronic energy + Delta-G solvation = -20650.296069 eV Core-core repulsion = 17602.587573 eV Total energy + Delta-G solvation = -3047.708496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97542 -38.53112 -37.08076 -33.94958 -33.46641 -31.99507 -29.07653 -27.40435 -26.85422 -26.48590 -25.36184 -22.93832 -22.64803 -20.57280 -19.67362 -18.63869 -17.55787 -16.42595 -16.06757 -15.70939 -15.30739 -14.73785 -14.51613 -14.09719 -13.94959 -13.69975 -13.33466 -13.01471 -12.92270 -12.71579 -12.53072 -12.05766 -12.03823 -11.85816 -11.53427 -11.12143 -10.98523 -10.85925 -10.61143 -10.58898 -10.36954 -10.30296 -10.24218 -9.91121 -9.84645 -9.17489 -9.11322 -8.91468 -8.49322 -8.34037 -5.98166 -3.99485 2.80301 3.32922 3.38341 3.39432 3.46246 3.48694 4.30175 4.37204 4.44609 4.49663 4.63094 4.66921 5.28627 5.30088 5.37209 5.43224 5.50353 5.54586 5.57781 5.63063 5.67768 5.75240 5.78078 5.78596 5.92123 6.20746 6.25217 6.31611 6.44671 6.51958 6.63411 6.65299 6.84308 7.08772 7.10086 7.10758 7.19144 7.66374 7.79263 8.00591 8.24380 8.42497 8.84500 9.05167 9.63397 11.13298 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045007 B = 0.003106 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.973209 B = 9011.274877 C = 9209.045021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.699 3.301 16 O -0.596 6.596 17 N -0.749 5.749 18 C 0.178 3.822 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.163 4.163 22 C -0.172 4.172 23 H 0.028 0.972 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 7.277 21.641 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.024 3.976 14 N -0.392 5.392 15 C 0.399 3.601 16 O -0.474 6.474 17 N -0.405 5.405 18 C 0.053 3.947 19 C -0.147 4.147 20 C -0.170 4.170 21 C -0.201 4.201 22 C -0.210 4.210 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.227 0.773 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.341 6.215 21.586 22.878 hybrid contribution -0.834 1.132 -1.001 1.726 sum -5.175 7.347 20.585 22.461 Atomic orbital electron populations 1.21748 0.95331 1.01121 1.00099 1.20912 0.95439 0.95860 0.95076 1.21746 1.00536 0.95919 1.00099 1.19086 0.96383 0.95233 0.89420 1.21150 1.31198 1.12082 0.90544 0.92331 1.25014 0.95336 0.95086 0.99060 1.69958 1.36901 1.23011 1.23528 0.86711 0.79127 0.79756 0.82697 1.20350 1.21404 1.20344 1.21476 0.98645 0.95619 0.81908 1.45366 1.56156 1.33156 1.04565 1.16025 0.80507 0.83014 0.80598 1.90913 1.42873 1.27606 1.86047 1.45082 1.57278 1.33378 1.04764 1.20574 1.00208 0.94944 0.78930 1.21743 0.94327 0.99329 0.99295 1.21310 0.99192 0.94925 1.01610 1.23054 1.03311 1.00290 0.93448 1.23042 0.93053 1.02247 1.02610 0.95327 0.91522 0.93392 0.93382 0.91529 0.95317 0.96311 0.96318 0.92987 0.92057 0.92075 0.77218 0.77253 0.91940 0.91031 0.91995 0.92423 0.91896 0.88463 0.88483 0.88590 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.88 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 14 N -0.74 -11.05 4.96 -65.23 -0.32 -11.37 16 15 C 0.70 11.05 8.57 -86.91 -0.74 10.31 16 16 O -0.60 -12.08 16.34 5.29 0.09 -11.99 16 17 N -0.75 -8.52 5.52 -65.22 -0.36 -8.88 16 18 C 0.18 1.86 5.58 -4.04 -0.02 1.83 16 19 C -0.15 -1.11 2.13 -154.51 -0.33 -1.44 16 20 C -0.11 -0.77 9.72 37.16 0.36 -0.41 16 21 C -0.16 -1.08 9.87 -26.73 -0.26 -1.34 16 22 C -0.17 -1.15 9.85 -26.73 -0.26 -1.42 16 23 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 24 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 28 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.39 4.92 6.18 -40.82 -0.25 4.67 16 35 H 0.39 3.49 8.42 -40.82 -0.34 3.15 16 36 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 37 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.33 8.10 -51.93 -0.42 -0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -31.50 352.37 -8.56 -40.06 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.75 Total: 3.21 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.24 Total: -6.74 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.05 Total: -46.08 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.50 -8.56 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353926806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.497 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds