Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 N 1.46497 * 113.53886 * 270.81230 * 4 3 2 6 6 C 1.34774 * 120.00109 * 252.49394 * 5 4 3 7 7 O 1.21584 * 119.99745 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00218 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00083 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47453 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46863 * 299.99827 * 10 9 8 12 12 C 1.53002 * 109.46812 * 59.99756 * 10 9 8 13 13 C 1.52993 * 109.47258 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47236 * 179.97438 * 13 10 9 15 15 H 1.08004 * 119.99901 * 359.97438 * 14 13 10 16 16 C 1.37875 * 120.00254 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99976 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00064 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47406 * 89.99773 * 18 16 14 20 20 H 1.48499 * 109.47351 * 210.00146 * 18 16 14 21 21 H 1.48499 * 109.47198 * 330.00017 * 18 16 14 22 22 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 23 23 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 24 24 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 25 25 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 26 26 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 27 27 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 28 28 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 29 29 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 30 30 H 0.96999 * 120.00430 * 72.48916 * 5 4 3 31 31 H 0.96992 * 119.99960 * 359.97438 * 8 6 5 32 32 H 1.09006 * 109.47076 * 300.00257 * 9 8 6 33 33 H 1.09004 * 109.47077 * 59.99815 * 9 8 6 34 34 H 1.09008 * 109.47113 * 60.00224 * 11 10 9 35 35 H 1.08995 * 109.47158 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.47418 * 300.00120 * 11 10 9 37 37 H 1.09000 * 109.47030 * 60.00595 * 12 10 9 38 38 H 1.09007 * 109.46857 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47150 * 299.99984 * 12 10 9 40 40 H 1.09000 * 109.47557 * 300.00000 * 13 10 9 41 41 H 1.09004 * 109.47004 * 60.00041 * 13 10 9 42 42 H 0.96998 * 120.00263 * 180.02562 * 17 16 14 43 43 H 1.09006 * 113.61506 * 254.52982 * 22 2 1 44 44 H 1.08996 * 113.61642 * 25.43366 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 7 4.3734 0.2940 -0.3364 6 6 5.5488 0.9523 -0.3755 7 8 5.6291 2.0192 -0.9529 8 7 6.6352 0.4279 0.2255 9 6 7.9130 1.1432 0.1826 10 6 8.9740 0.3378 0.9353 11 6 8.5393 0.1572 2.3911 12 6 9.1350 -1.0339 0.2771 13 6 10.3085 1.0846 0.8899 14 6 11.3534 0.2917 1.6318 15 1 11.0916 -0.6505 2.0903 16 6 12.6432 0.7694 1.7263 17 7 13.5549 0.0776 2.3742 18 14 13.0955 2.4000 0.9352 19 1 12.8814 3.4996 1.9101 20 1 14.5226 2.3725 0.5255 21 1 12.2420 2.6244 -0.2592 22 6 2.1460 -0.1865 -1.3966 23 1 -0.3633 -0.9603 -0.3660 24 1 -0.3633 0.7971 -0.6487 25 1 -0.3634 0.1632 1.0147 26 1 1.9533 -0.6616 0.7559 27 1 1.4945 2.1704 -0.4289 28 1 2.5650 1.7024 0.9626 29 1 3.4444 1.5619 -1.7878 30 1 4.3095 -0.5574 0.1240 31 1 6.5711 -0.4231 0.6865 32 1 8.2224 1.2724 -0.8547 33 1 7.7983 2.1203 0.6519 34 1 7.5886 -0.3751 2.4231 35 1 9.2949 -0.4169 2.9273 36 1 8.4245 1.1344 2.8600 37 1 9.4447 -0.9052 -0.7600 38 1 9.8906 -1.6079 0.8137 39 1 8.1843 -1.5662 0.3091 40 1 10.6180 1.2130 -0.1474 41 1 10.1940 2.0621 1.3585 42 1 14.4623 0.4139 2.4410 43 1 2.5651 -1.1795 -1.5599 44 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353930400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = -33.356702 kcal Electronic energy + Delta-G solvation = -20760.457601 eV Core-core repulsion = 17712.714650 eV Total energy + Delta-G solvation = -3047.742951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41404 -38.89101 -37.14337 -33.74585 -33.26936 -32.00002 -29.44369 -27.77022 -26.54438 -26.07681 -25.95893 -23.12721 -22.31891 -20.90361 -19.40373 -18.81542 -17.62138 -16.83660 -16.24624 -15.41139 -15.32713 -14.74123 -14.36944 -14.20579 -13.95940 -13.69976 -13.68210 -13.37163 -12.82092 -12.69854 -12.37318 -12.31665 -12.25356 -11.83068 -11.25636 -11.23057 -11.10843 -10.99897 -10.61109 -10.58510 -10.46686 -10.40116 -10.09735 -9.95381 -9.73554 -9.50159 -9.16778 -8.98217 -8.61476 -8.52436 -6.03378 -4.00555 2.77684 3.32825 3.33214 3.40789 3.45348 4.25209 4.26326 4.34281 4.46888 4.60343 4.67041 5.09515 5.29422 5.29541 5.38556 5.39227 5.44120 5.44958 5.56424 5.61064 5.65539 5.73926 5.80088 5.93596 6.01190 6.13640 6.14190 6.20347 6.34734 6.52695 6.56105 6.60939 6.74830 6.91756 7.02679 7.03916 7.07806 7.22154 7.38528 7.79251 8.14702 8.53658 8.74955 9.00638 9.59462 11.09370 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044552 B = 0.003261 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.333806 B = 8583.414338 C = 8847.369003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.151 4.151 4 C 0.141 3.859 5 N -0.733 5.733 6 C 0.702 3.298 7 O -0.594 6.594 8 N -0.736 5.736 9 C 0.145 3.855 10 C -0.063 4.063 11 C -0.128 4.128 12 C -0.128 4.128 13 C -0.002 4.002 14 C -0.510 4.510 15 H 0.078 0.922 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.145 4.145 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.262 0.738 43 H 0.071 0.929 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.768 -2.368 -4.697 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.190 4.190 4 C 0.034 3.966 5 N -0.388 5.388 6 C 0.402 3.598 7 O -0.472 6.472 8 N -0.392 5.392 9 C 0.021 3.979 10 C -0.063 4.063 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.040 4.040 14 C -0.548 4.548 15 H 0.096 0.904 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.183 4.183 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.228 0.772 31 H 0.230 0.770 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.461 -1.360 -5.188 24.066 hybrid contribution 0.336 0.061 0.146 0.371 sum -23.124 -1.299 -5.042 23.703 Atomic orbital electron populations 1.21717 0.94812 1.01671 1.01728 1.22546 0.95700 0.97797 0.97421 1.23568 0.98152 0.96547 1.00752 1.21604 0.83473 0.95972 0.95509 1.44780 1.08352 1.25239 1.60410 1.15992 0.80221 0.83791 0.79814 1.90906 1.84659 1.22409 1.49256 1.45322 1.09413 1.25797 1.58632 1.21497 0.80637 0.95079 1.00680 1.20694 0.95304 0.95773 0.94546 1.21765 0.99293 1.01279 0.96158 1.21763 0.99892 0.96291 1.00534 1.19594 0.91591 0.95581 0.97257 1.21079 0.92804 1.07389 1.33529 0.90412 1.24999 0.96553 0.97004 0.94918 1.69901 1.03133 1.38698 1.42640 0.86855 0.77581 0.84751 0.80570 1.20377 1.21530 1.18943 1.23410 0.97677 0.99641 0.97560 0.92630 0.92544 0.92702 0.89476 0.89337 0.91131 0.88080 0.77225 0.77046 0.92030 0.92051 0.95096 0.90945 0.93416 0.93402 0.90943 0.95089 0.96312 0.96774 0.92810 0.90986 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.70 37.16 0.36 -0.47 16 2 C -0.12 -0.79 4.23 -89.81 -0.38 -1.17 16 3 C -0.15 -1.29 7.44 -25.83 -0.19 -1.48 16 4 C 0.14 1.39 4.33 -67.02 -0.29 1.10 16 5 N -0.73 -7.94 5.26 -57.79 -0.30 -8.24 16 6 C 0.70 10.57 8.57 -86.92 -0.74 9.83 16 7 O -0.59 -11.49 15.94 5.29 0.08 -11.41 16 8 N -0.74 -10.46 4.96 -65.22 -0.32 -10.78 16 9 C 0.14 2.47 4.56 -4.04 -0.02 2.46 16 10 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 11 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 14 C -0.51 -13.66 8.20 -34.44 -0.28 -13.94 16 15 H 0.08 2.20 5.92 -52.48 -0.31 1.89 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 18 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 22 C -0.14 -1.02 7.39 -25.92 -0.19 -1.21 16 23 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.32 7.98 -51.93 -0.41 -0.10 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.68 7.99 -51.93 -0.41 0.27 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.21 7.46 -51.93 -0.39 0.82 16 30 H 0.39 3.22 8.72 -40.82 -0.36 2.86 16 31 H 0.39 4.67 6.18 -40.82 -0.25 4.42 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.43 6.86 -51.92 -0.36 0.08 16 35 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -31.68 343.65 -8.36 -40.04 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.69 Total: 3.08 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.41 Total: -8.29 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.15 Total: -45.53 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.68 -8.36 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353930400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.683 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds