Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 N 1.46497 * 113.53886 * 270.81230 * 4 3 2 6 6 C 1.34774 * 120.00109 * 252.49394 * 5 4 3 7 7 O 1.21584 * 119.99745 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00218 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00083 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47453 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46863 * 299.99827 * 10 9 8 12 12 C 1.53002 * 109.46812 * 59.99756 * 10 9 8 13 13 C 1.52993 * 109.47258 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47236 * 179.97438 * 13 10 9 15 15 H 1.08004 * 119.99901 * 359.97438 * 14 13 10 16 16 C 1.37875 * 120.00254 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99976 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00064 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47406 * 89.99773 * 18 16 14 20 20 H 1.48499 * 109.47351 * 210.00146 * 18 16 14 21 21 H 1.48499 * 109.47198 * 330.00017 * 18 16 14 22 22 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 23 23 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 24 24 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 25 25 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 26 26 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 27 27 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 28 28 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 29 29 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 30 30 H 0.96999 * 120.00430 * 72.48916 * 5 4 3 31 31 H 0.96992 * 119.99960 * 359.97438 * 8 6 5 32 32 H 1.09006 * 109.47076 * 300.00257 * 9 8 6 33 33 H 1.09004 * 109.47077 * 59.99815 * 9 8 6 34 34 H 1.09008 * 109.47113 * 60.00224 * 11 10 9 35 35 H 1.08995 * 109.47158 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.47418 * 300.00120 * 11 10 9 37 37 H 1.09000 * 109.47030 * 60.00595 * 12 10 9 38 38 H 1.09007 * 109.46857 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47150 * 299.99984 * 12 10 9 40 40 H 1.09000 * 109.47557 * 300.00000 * 13 10 9 41 41 H 1.09004 * 109.47004 * 60.00041 * 13 10 9 42 42 H 0.96998 * 120.00263 * 180.02562 * 17 16 14 43 43 H 1.09006 * 113.61506 * 254.52982 * 22 2 1 44 44 H 1.08996 * 113.61642 * 25.43366 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 7 4.3734 0.2940 -0.3364 6 6 5.5488 0.9523 -0.3755 7 8 5.6291 2.0192 -0.9529 8 7 6.6352 0.4279 0.2255 9 6 7.9130 1.1432 0.1826 10 6 8.9740 0.3378 0.9353 11 6 8.5393 0.1572 2.3911 12 6 9.1350 -1.0339 0.2771 13 6 10.3085 1.0846 0.8899 14 6 11.3534 0.2917 1.6318 15 1 11.0916 -0.6505 2.0903 16 6 12.6432 0.7694 1.7263 17 7 13.5549 0.0776 2.3742 18 14 13.0955 2.4000 0.9352 19 1 12.8814 3.4996 1.9101 20 1 14.5226 2.3725 0.5255 21 1 12.2420 2.6244 -0.2592 22 6 2.1460 -0.1865 -1.3966 23 1 -0.3633 -0.9603 -0.3660 24 1 -0.3633 0.7971 -0.6487 25 1 -0.3634 0.1632 1.0147 26 1 1.9533 -0.6616 0.7559 27 1 1.4945 2.1704 -0.4289 28 1 2.5650 1.7024 0.9626 29 1 3.4444 1.5619 -1.7878 30 1 4.3095 -0.5574 0.1240 31 1 6.5711 -0.4231 0.6865 32 1 8.2224 1.2724 -0.8547 33 1 7.7983 2.1203 0.6519 34 1 7.5886 -0.3751 2.4231 35 1 9.2949 -0.4169 2.9273 36 1 8.4245 1.1344 2.8600 37 1 9.4447 -0.9052 -0.7600 38 1 9.8906 -1.6079 0.8137 39 1 8.1843 -1.5662 0.3091 40 1 10.6180 1.2130 -0.1474 41 1 10.1940 2.0621 1.3585 42 1 14.4623 0.4139 2.4410 43 1 2.5651 -1.1795 -1.5599 44 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353930400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -54.028910 kcal Electronic energy + Delta-G solvation = -20761.354016 eV Core-core repulsion = 17712.714650 eV Total energy + Delta-G solvation = -3048.639365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41911 -39.86794 -38.56509 -35.20483 -34.54518 -33.70612 -30.17955 -29.56777 -27.97631 -27.42566 -26.58094 -24.56423 -23.42815 -22.09464 -20.30686 -19.94249 -19.02856 -18.85923 -17.21194 -16.59399 -16.38320 -16.03124 -15.74074 -15.43492 -15.21731 -14.91234 -14.82570 -14.38780 -14.19415 -14.14268 -13.92071 -13.38378 -12.93938 -12.86720 -12.83734 -12.63147 -12.47709 -12.29472 -12.15236 -11.81520 -11.77083 -11.50927 -11.40499 -11.20177 -11.13883 -11.03091 -10.90014 -10.69984 -10.29079 -9.70399 -8.22049 -6.21937 1.36220 1.39079 1.49243 1.71826 2.15872 2.39578 3.13506 3.32673 3.62820 3.67662 3.93532 3.99060 4.01878 4.08039 4.17456 4.56607 4.64547 4.73310 4.74317 4.76766 4.81893 4.85570 4.92185 4.96427 4.97079 5.03728 5.10568 5.16907 5.20264 5.30792 5.37583 5.38072 5.41587 5.46991 5.51528 5.58050 5.70601 5.74281 5.77519 6.05256 6.38698 6.84810 7.13142 7.40848 7.61402 8.93521 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044552 B = 0.003261 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.333806 B = 8583.414338 C = 8847.369003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.151 4.151 4 C 0.125 3.875 5 N -0.714 5.714 6 C 0.700 3.300 7 O -0.640 6.640 8 N -0.725 5.725 9 C 0.159 3.841 10 C -0.057 4.057 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.005 4.005 14 C -0.500 4.500 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.933 3.067 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.252 1.252 22 C -0.130 4.130 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.411 0.589 31 H 0.409 0.591 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.262 0.738 43 H 0.081 0.919 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.337 -2.732 -5.316 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.190 4.190 4 C 0.019 3.981 5 N -0.370 5.370 6 C 0.399 3.601 7 O -0.522 6.522 8 N -0.382 5.382 9 C 0.034 3.966 10 C -0.057 4.057 11 C -0.180 4.180 12 C -0.180 4.180 13 C -0.042 4.042 14 C -0.539 4.539 15 H 0.071 0.929 16 C -0.191 4.191 17 N -0.593 5.593 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.176 1.176 22 C -0.168 4.168 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.247 0.753 31 H 0.246 0.754 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.083 -1.771 -5.794 26.777 hybrid contribution 1.062 0.125 0.355 1.127 sum -25.020 -1.646 -5.439 25.658 Atomic orbital electron populations 1.21710 0.93894 1.02272 1.01953 1.22507 0.96407 0.96287 0.97311 1.23577 0.97865 0.98010 0.99532 1.21801 0.83625 0.97182 0.95526 1.44614 1.07261 1.25391 1.59720 1.16139 0.81124 0.83397 0.79396 1.90881 1.85470 1.24601 1.51214 1.45016 1.08333 1.26084 1.58736 1.21112 0.81408 0.94564 0.99542 1.20548 0.93485 0.95933 0.95759 1.21691 1.00319 1.01165 0.94801 1.21691 1.01128 0.95538 0.99611 1.19576 0.93072 0.95482 0.96114 1.21362 0.93567 1.06577 1.32344 0.92864 1.25821 0.96849 1.00510 0.95890 1.70036 1.03604 1.40752 1.44909 0.85908 0.77351 0.80737 0.80156 1.19743 1.21463 1.17596 1.23367 0.96336 0.99001 0.98125 0.91759 0.92337 0.92616 0.88867 0.88726 0.92526 0.90592 0.75272 0.75355 0.93094 0.93104 0.91304 0.93565 0.93780 0.93767 0.93561 0.91276 0.96698 0.96888 0.92867 0.90073 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.70 71.98 0.70 -0.55 16 2 C -0.11 -1.15 4.23 -10.27 -0.04 -1.19 16 3 C -0.15 -2.32 7.44 31.18 0.23 -2.09 16 4 C 0.12 2.27 4.33 45.58 0.20 2.47 16 5 N -0.71 -13.92 5.26 -455.01 -2.40 -16.31 16 6 C 0.70 19.94 8.57 179.06 1.53 21.48 16 7 O -0.64 -24.48 15.94 -3.98 -0.06 -24.54 16 8 N -0.73 -18.90 4.96 -478.53 -2.37 -21.28 16 9 C 0.16 5.19 4.56 86.38 0.39 5.59 16 10 C -0.06 -2.01 0.54 -52.18 -0.03 -2.04 16 11 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 12 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 13 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 14 C -0.50 -27.19 8.20 25.60 0.21 -26.98 16 15 H 0.05 3.10 5.92 -2.91 -0.02 3.09 16 16 C 0.01 0.32 5.47 84.65 0.46 0.78 16 17 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 18 Si 0.93 44.70 27.47 68.60 1.88 46.58 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 21 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 22 C -0.13 -1.47 7.39 31.12 0.23 -1.24 16 23 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.06 0.50 7.98 -2.39 -0.02 0.48 16 25 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.09 1.33 7.99 -2.39 -0.02 1.31 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.79 7.46 -2.39 -0.02 1.77 16 30 H 0.41 5.35 8.72 -92.71 -0.81 4.54 16 31 H 0.41 8.21 6.18 -92.71 -0.57 7.64 16 32 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.07 1.73 6.86 -2.38 -0.02 1.71 16 35 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.78 6.62 -2.38 -0.02 1.76 16 39 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 40 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 41 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.10 0.99 8.10 -2.39 -0.02 0.97 16 Total: -1.00 -70.03 343.65 2.03 -68.00 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.45 Total: 16.87 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 5.14 Total: -10.84 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -4.47 Total: -96.06 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -70.03 2.03 -68.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353930400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.970 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds