Wall clock time and date at job start Mon Mar 30 2020 01:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99971 * 2 1 4 4 O 1.21578 * 119.99971 * 179.97438 * 3 2 1 5 5 N 1.34773 * 119.99866 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00202 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47557 * 180.02562 * 6 5 3 8 8 C 1.50705 * 109.47197 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99628 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99619 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00244 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99686 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47188 * 89.99901 * 12 10 8 14 14 H 1.48499 * 109.47166 * 210.00152 * 12 10 8 15 15 H 1.48503 * 109.46862 * 330.00048 * 12 10 8 16 16 C 1.46502 * 120.00027 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.53919 * 181.15679 * 16 2 1 18 18 C 1.54897 * 110.48363 * 58.55082 * 16 2 1 19 19 C 1.54889 * 102.74591 * 203.37766 * 18 16 2 20 20 C 1.54268 * 104.19728 * 37.94393 * 19 18 16 21 21 C 1.52999 * 110.03172 * 95.67285 * 20 19 18 22 22 C 1.53002 * 110.02959 * 217.10559 * 20 19 18 23 23 C 1.53873 * 106.59675 * 336.38656 * 20 19 18 24 24 H 1.08992 * 109.47214 * 270.00361 * 1 2 3 25 25 H 1.09000 * 109.47213 * 30.00919 * 1 2 3 26 26 H 1.09007 * 109.46832 * 150.00004 * 1 2 3 27 27 H 0.97004 * 120.00765 * 0.02562 * 5 3 2 28 28 H 1.09005 * 109.47325 * 300.00371 * 6 5 3 29 29 H 1.09003 * 109.46708 * 59.99910 * 6 5 3 30 30 H 1.09002 * 109.46661 * 299.99695 * 7 6 5 31 31 H 1.08999 * 109.46923 * 60.00301 * 7 6 5 32 32 H 0.97008 * 119.99883 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.75568 * 321.69078 * 18 16 2 34 34 H 1.09003 * 110.75125 * 84.87562 * 18 16 2 35 35 H 1.08998 * 110.48466 * 156.62292 * 19 18 16 36 36 H 1.09000 * 110.48547 * 279.12998 * 19 18 16 37 37 H 1.09003 * 109.46859 * 61.45164 * 21 20 19 38 38 H 1.08996 * 109.46731 * 181.45344 * 21 20 19 39 39 H 1.08996 * 109.47103 * 301.45362 * 21 20 19 40 40 H 1.08994 * 109.47166 * 58.54790 * 22 20 19 41 41 H 1.09005 * 109.46842 * 178.54672 * 22 20 19 42 42 H 1.09000 * 109.47019 * 298.54376 * 22 20 19 43 43 H 1.09001 * 110.03473 * 240.71407 * 23 20 19 44 44 H 1.09005 * 110.03108 * 119.28164 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1974 3.6031 -0.0011 7 6 1.2032 4.7660 -0.0010 8 6 1.9567 6.0712 -0.0022 9 1 3.0367 6.0711 -0.0026 10 6 1.2673 7.2652 -0.0028 11 7 -0.0478 7.2651 -0.0019 12 14 2.2013 8.8829 -0.0051 13 1 2.4478 9.3103 -1.4056 14 1 1.3992 9.9185 0.6946 15 1 3.4994 8.7060 0.6942 16 6 2.1976 -1.2687 0.0006 17 1 3.2725 -1.0897 0.0211 18 6 1.8129 -2.1173 -1.2369 19 6 2.1540 -3.5582 -0.7827 20 6 1.7441 -3.5932 0.7042 21 6 0.3335 -4.1687 0.8455 22 6 2.7384 -4.4391 1.5021 23 6 1.7718 -2.1375 1.2021 24 1 -0.3633 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5139 27 1 0.4950 2.3344 -0.0005 28 1 2.8242 3.6613 0.8889 29 1 2.8241 3.6604 -0.8911 30 1 0.5763 4.7081 -0.8908 31 1 0.5769 4.7085 0.8893 32 1 -0.5328 8.1052 -0.0020 33 1 0.7492 -2.0225 -1.4548 34 1 2.4101 -1.8305 -2.1026 35 1 1.5773 -4.2851 -1.3546 36 1 3.2216 -3.7496 -0.8907 37 1 0.3188 -5.1911 0.4677 38 1 0.0434 -4.1653 1.8961 39 1 -0.3663 -3.5598 0.2733 40 1 3.7393 -4.0214 1.3944 41 1 2.4549 -4.4365 2.5547 42 1 2.7291 -5.4621 1.1259 43 1 2.4935 -2.0337 2.0123 44 1 0.7803 -1.8411 1.5444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354248017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:42 Heat of formation + Delta-G solvation = -53.856744 kcal Electronic energy + Delta-G solvation = -20884.997994 eV Core-core repulsion = 17836.366095 eV Total energy + Delta-G solvation = -3048.631900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28224 -38.72055 -35.22436 -34.75733 -32.84959 -31.50163 -29.52106 -28.48302 -27.56379 -26.76595 -24.95402 -24.03109 -21.37716 -20.69523 -19.27338 -18.89528 -17.91299 -16.55386 -16.05893 -15.43931 -15.27627 -14.67796 -14.48528 -14.05998 -13.89854 -13.66723 -13.61067 -13.34897 -12.99800 -12.67757 -12.32490 -12.28882 -12.23801 -11.87685 -11.66735 -11.45690 -11.13368 -11.01569 -10.96932 -10.75135 -10.65503 -10.62013 -10.51582 -10.29020 -9.83119 -9.51098 -9.23393 -8.64705 -8.43204 -8.13804 -6.07430 -4.09856 2.95541 3.31078 3.37059 3.41807 3.59002 4.27255 4.36789 4.42708 4.51875 4.58721 4.99028 5.06862 5.11561 5.16634 5.23408 5.29733 5.32062 5.38088 5.42036 5.44922 5.54264 5.63249 5.69791 5.75283 5.76540 5.84211 5.92633 6.02185 6.10137 6.17829 6.22090 6.33489 6.43392 6.71893 6.80744 7.05074 7.25194 7.58477 7.65773 7.91943 8.27766 8.42366 8.95035 9.03637 9.54791 11.04303 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048928 B = 0.003085 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.134941 B = 9074.869080 C = 9280.149766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.631 5.631 3 C 0.700 3.300 4 O -0.598 6.598 5 N -0.738 5.738 6 C 0.139 3.861 7 C 0.013 3.987 8 C -0.520 4.520 9 H 0.060 0.940 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.156 3.844 17 H 0.105 0.895 18 C -0.136 4.136 19 C -0.113 4.113 20 C -0.069 4.069 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.393 0.607 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -23.713 0.479 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.368 5.368 3 C 0.402 3.598 4 O -0.477 6.477 5 N -0.393 5.393 6 C 0.016 3.984 7 C -0.024 4.024 8 C -0.559 4.559 9 H 0.078 0.922 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.197 1.197 16 C 0.051 3.949 17 H 0.123 0.877 18 C -0.174 4.174 19 C -0.151 4.151 20 C -0.069 4.069 21 C -0.194 4.194 22 C -0.197 4.197 23 C -0.166 4.166 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.228 0.772 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.657 -23.529 0.492 23.544 hybrid contribution -0.243 0.969 0.018 0.999 sum -0.900 -22.560 0.510 22.584 Atomic orbital electron populations 1.21658 0.80507 1.02860 1.01525 1.47016 1.05926 1.04782 1.79115 1.16014 0.85418 0.80498 0.77908 1.90861 1.11740 1.86294 1.58795 1.45683 1.09946 1.05332 1.78333 1.21589 0.95662 0.80527 1.00611 1.19319 0.94253 0.91109 0.97733 1.21060 0.93282 0.90363 1.51152 0.92213 1.24993 0.94894 0.99395 0.95032 1.69957 1.06091 1.26822 1.50533 0.86510 0.79856 0.82994 0.78186 1.20571 1.21191 1.19711 1.21741 0.97944 0.81404 0.93815 0.87688 1.22870 1.01762 0.94713 0.98095 1.22423 1.01369 0.96501 0.94768 1.21126 0.95638 0.94833 0.95311 1.21898 0.95538 1.00393 1.01560 1.21922 0.98808 0.99316 0.99635 1.22668 1.02357 0.93443 0.98166 0.92896 0.91234 0.91003 0.77227 0.92820 0.92832 0.96040 0.96009 0.92883 0.91096 0.91213 0.91477 0.91269 0.92808 0.92741 0.92612 0.92417 0.92746 0.92803 0.91299 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 8.98 59.85 0.54 1.35 16 2 N -0.63 -8.81 2.86 -177.76 -0.51 -9.32 16 3 C 0.70 13.03 8.28 -86.92 -0.72 12.31 16 4 O -0.60 -13.37 15.71 5.30 0.08 -13.29 16 5 N -0.74 -13.80 5.42 -65.23 -0.35 -14.16 16 6 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 7 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 8 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 9 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 12 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 16 C 0.16 1.90 3.27 -66.27 -0.22 1.68 16 17 H 0.11 1.55 6.98 -51.93 -0.36 1.19 16 18 C -0.14 -1.34 6.43 -24.73 -0.16 -1.50 16 19 C -0.11 -0.91 5.90 -25.07 -0.15 -1.06 16 20 C -0.07 -0.55 0.94 -153.39 -0.14 -0.69 16 21 C -0.14 -0.95 8.15 37.16 0.30 -0.65 16 22 C -0.14 -1.04 8.16 37.16 0.30 -0.73 16 23 C -0.13 -1.28 5.73 -25.62 -0.15 -1.42 16 24 H 0.05 0.51 7.88 -51.93 -0.41 0.10 16 25 H 0.07 0.73 6.36 -51.93 -0.33 0.40 16 26 H 0.07 0.60 6.27 -51.93 -0.33 0.27 16 27 H 0.39 6.42 6.20 -40.82 -0.25 6.16 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.07 0.65 6.27 -51.93 -0.33 0.32 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 36 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 44 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -32.01 344.52 -8.58 -40.59 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.74 Total: 0.85 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.97 Total: -0.82 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.13 Total: -49.07 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.01 -8.58 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354248017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.269 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds