Wall clock time and date at job start Mon Mar 30 2020 01:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99971 * 2 1 4 4 O 1.21578 * 119.99971 * 179.97438 * 3 2 1 5 5 N 1.34773 * 119.99866 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00202 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47557 * 180.02562 * 6 5 3 8 8 C 1.50705 * 109.47197 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99628 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99619 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00244 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99686 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47188 * 89.99901 * 12 10 8 14 14 H 1.48499 * 109.47166 * 210.00152 * 12 10 8 15 15 H 1.48503 * 109.46862 * 330.00048 * 12 10 8 16 16 C 1.46502 * 120.00027 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.53919 * 181.15679 * 16 2 1 18 18 C 1.54897 * 110.48363 * 58.55082 * 16 2 1 19 19 C 1.54889 * 102.74591 * 203.37766 * 18 16 2 20 20 C 1.54268 * 104.19728 * 37.94393 * 19 18 16 21 21 C 1.52999 * 110.03172 * 95.67285 * 20 19 18 22 22 C 1.53002 * 110.02959 * 217.10559 * 20 19 18 23 23 C 1.53873 * 106.59675 * 336.38656 * 20 19 18 24 24 H 1.08992 * 109.47214 * 270.00361 * 1 2 3 25 25 H 1.09000 * 109.47213 * 30.00919 * 1 2 3 26 26 H 1.09007 * 109.46832 * 150.00004 * 1 2 3 27 27 H 0.97004 * 120.00765 * 0.02562 * 5 3 2 28 28 H 1.09005 * 109.47325 * 300.00371 * 6 5 3 29 29 H 1.09003 * 109.46708 * 59.99910 * 6 5 3 30 30 H 1.09002 * 109.46661 * 299.99695 * 7 6 5 31 31 H 1.08999 * 109.46923 * 60.00301 * 7 6 5 32 32 H 0.97008 * 119.99883 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.75568 * 321.69078 * 18 16 2 34 34 H 1.09003 * 110.75125 * 84.87562 * 18 16 2 35 35 H 1.08998 * 110.48466 * 156.62292 * 19 18 16 36 36 H 1.09000 * 110.48547 * 279.12998 * 19 18 16 37 37 H 1.09003 * 109.46859 * 61.45164 * 21 20 19 38 38 H 1.08996 * 109.46731 * 181.45344 * 21 20 19 39 39 H 1.08996 * 109.47103 * 301.45362 * 21 20 19 40 40 H 1.08994 * 109.47166 * 58.54790 * 22 20 19 41 41 H 1.09005 * 109.46842 * 178.54672 * 22 20 19 42 42 H 1.09000 * 109.47019 * 298.54376 * 22 20 19 43 43 H 1.09001 * 110.03473 * 240.71407 * 23 20 19 44 44 H 1.09005 * 110.03108 * 119.28164 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1974 3.6031 -0.0011 7 6 1.2032 4.7660 -0.0010 8 6 1.9567 6.0712 -0.0022 9 1 3.0367 6.0711 -0.0026 10 6 1.2673 7.2652 -0.0028 11 7 -0.0478 7.2651 -0.0019 12 14 2.2013 8.8829 -0.0051 13 1 2.4478 9.3103 -1.4056 14 1 1.3992 9.9185 0.6946 15 1 3.4994 8.7060 0.6942 16 6 2.1976 -1.2687 0.0006 17 1 3.2725 -1.0897 0.0211 18 6 1.8129 -2.1173 -1.2369 19 6 2.1540 -3.5582 -0.7827 20 6 1.7441 -3.5932 0.7042 21 6 0.3335 -4.1687 0.8455 22 6 2.7384 -4.4391 1.5021 23 6 1.7718 -2.1375 1.2021 24 1 -0.3633 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5139 27 1 0.4950 2.3344 -0.0005 28 1 2.8242 3.6613 0.8889 29 1 2.8241 3.6604 -0.8911 30 1 0.5763 4.7081 -0.8908 31 1 0.5769 4.7085 0.8893 32 1 -0.5328 8.1052 -0.0020 33 1 0.7492 -2.0225 -1.4548 34 1 2.4101 -1.8305 -2.1026 35 1 1.5773 -4.2851 -1.3546 36 1 3.2216 -3.7496 -0.8907 37 1 0.3188 -5.1911 0.4677 38 1 0.0434 -4.1653 1.8961 39 1 -0.3663 -3.5598 0.2733 40 1 3.7393 -4.0214 1.3944 41 1 2.4549 -4.4365 2.5547 42 1 2.7291 -5.4621 1.1259 43 1 2.4935 -2.0337 2.0123 44 1 0.7803 -1.8411 1.5444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354248017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:42 Heat of formation + Delta-G solvation = -72.937800 kcal Electronic energy + Delta-G solvation = -20885.825411 eV Core-core repulsion = 17836.366095 eV Total energy + Delta-G solvation = -3049.459316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48636 -39.77581 -36.67683 -36.25133 -34.81532 -32.51002 -31.19401 -29.42779 -28.15618 -27.78513 -26.68818 -25.06182 -23.07833 -22.08874 -20.45366 -19.61675 -19.23742 -18.51353 -17.46825 -16.78753 -16.52724 -16.15757 -15.81679 -15.33903 -15.03882 -14.77500 -14.60987 -14.28486 -14.24635 -13.92650 -13.76286 -13.38859 -13.03448 -12.95826 -12.88276 -12.68487 -12.52182 -12.33618 -12.29510 -12.21928 -11.71128 -11.65628 -11.47916 -11.39260 -11.33535 -11.31138 -11.13378 -10.60761 -10.15654 -9.44051 -8.24325 -6.34691 1.41734 1.42508 1.53799 1.68512 2.11679 2.40805 3.04949 3.10404 3.60208 3.66952 3.86546 4.19468 4.25974 4.35193 4.43699 4.45799 4.49245 4.50216 4.56606 4.58374 4.66671 4.81568 4.84438 4.87940 4.95069 4.98034 5.05414 5.15543 5.16603 5.21016 5.28372 5.31358 5.42880 5.45545 5.49840 5.57909 5.59147 5.63598 5.79287 5.99076 6.16699 6.77983 6.99081 7.34565 7.55698 8.87696 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048928 B = 0.003085 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.134941 B = 9074.869080 C = 9280.149766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.621 5.621 3 C 0.695 3.305 4 O -0.642 6.642 5 N -0.733 5.733 6 C 0.160 3.840 7 C 0.026 3.974 8 C -0.547 4.547 9 H 0.058 0.942 10 C 0.008 3.992 11 N -0.926 5.926 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.267 1.267 16 C 0.146 3.854 17 H 0.072 0.928 18 C -0.129 4.129 19 C -0.107 4.107 20 C -0.064 4.064 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.121 4.121 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.405 0.595 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.266 0.734 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 -24.946 0.362 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.357 5.357 3 C 0.396 3.604 4 O -0.524 6.524 5 N -0.389 5.389 6 C 0.035 3.965 7 C -0.012 4.012 8 C -0.586 4.586 9 H 0.076 0.924 10 C -0.191 4.191 11 N -0.566 5.566 12 Si 0.790 3.210 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.191 1.191 16 C 0.042 3.958 17 H 0.090 0.910 18 C -0.167 4.167 19 C -0.145 4.145 20 C -0.065 4.065 21 C -0.192 4.192 22 C -0.197 4.197 23 C -0.160 4.160 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.243 0.757 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.629 -24.816 0.375 24.873 hybrid contribution 0.021 1.290 0.060 1.292 sum -1.608 -23.526 0.436 23.585 Atomic orbital electron populations 1.21941 0.77931 1.04354 1.02932 1.47088 1.07501 1.03716 1.77432 1.16188 0.84992 0.81438 0.77770 1.90826 1.13812 1.87068 1.60731 1.45382 1.10405 1.04457 1.78699 1.21078 0.94695 0.81258 0.99440 1.19110 0.94156 0.91586 0.96303 1.21456 0.93582 0.91900 1.51631 0.92374 1.25865 0.95819 1.03065 0.94355 1.70055 1.07513 1.28025 1.50961 0.85436 0.78611 0.78399 0.78552 1.19713 1.20391 1.19140 1.21906 0.96202 0.81141 0.96507 0.90993 1.22827 1.02336 0.95237 0.96331 1.22418 1.01617 0.95535 0.94949 1.21107 0.96837 0.93401 0.95116 1.21883 0.94373 1.01015 1.01882 1.21918 0.98123 0.99850 0.99774 1.22624 1.02154 0.94486 0.96727 0.91501 0.91189 0.88107 0.75745 0.94040 0.93978 0.97306 0.97322 0.92495 0.89643 0.92368 0.89570 0.91553 0.91668 0.92600 0.92186 0.93366 0.92576 0.91501 0.92542 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 8.98 127.77 1.15 2.47 16 2 N -0.62 -17.01 2.86 -834.57 -2.39 -19.40 16 3 C 0.69 26.26 8.28 179.06 1.48 27.75 16 4 O -0.64 -29.76 15.71 -3.96 -0.06 -29.82 16 5 N -0.73 -27.74 5.42 -478.54 -2.59 -30.34 16 6 C 0.16 7.28 5.61 86.38 0.48 7.77 16 7 C 0.03 1.34 5.09 29.85 0.15 1.50 16 8 C -0.55 -31.17 9.11 25.60 0.23 -30.93 16 9 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 10 C 0.01 0.44 5.46 84.65 0.46 0.90 16 11 N -0.93 -54.61 13.29 21.44 0.28 -54.32 16 12 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 C 0.15 3.53 3.27 46.07 0.15 3.69 16 17 H 0.07 2.23 6.98 -2.39 -0.02 2.21 16 18 C -0.13 -2.34 6.43 31.89 0.21 -2.14 16 19 C -0.11 -1.50 5.90 31.67 0.19 -1.32 16 20 C -0.06 -0.89 0.94 -51.46 -0.05 -0.94 16 21 C -0.13 -1.44 8.15 71.98 0.59 -0.85 16 22 C -0.14 -1.84 8.16 71.98 0.59 -1.25 16 23 C -0.12 -2.29 5.73 31.32 0.18 -2.11 16 24 H 0.07 1.12 7.88 -2.39 -0.02 1.10 16 25 H 0.07 1.34 6.36 -2.39 -0.02 1.32 16 26 H 0.10 1.34 6.27 -2.38 -0.01 1.32 16 27 H 0.41 13.16 6.20 -92.70 -0.58 12.58 16 28 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 33 H 0.09 1.31 6.27 -2.39 -0.01 1.30 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 0.93 7.84 -2.39 -0.02 0.91 16 36 H 0.07 0.98 7.86 -2.39 -0.02 0.96 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 1.20 7.67 -2.39 -0.02 1.18 16 44 H 0.08 1.37 6.35 -2.38 -0.02 1.36 16 Total: -1.00 -69.53 344.52 3.46 -66.07 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.39 Total: 17.19 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.81 Total: 4.53 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.70 Total: -104.06 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.06 Total: -29.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.53 3.46 -66.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354248017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.863 kcal (2) G-P(sol) polarization free energy of solvation -69.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds