Wall clock time and date at job start Mon Mar 30 2020 01:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 115.54764 * 2 1 4 4 C 1.52993 * 117.49959 * 145.67308 * 2 1 3 5 5 C 1.53002 * 117.49764 * 214.98314 * 4 2 1 6 6 N 1.46498 * 109.47325 * 71.55836 * 5 4 2 7 7 C 1.34784 * 119.99976 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34766 * 120.00094 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00124 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46689 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99837 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00106 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46957 * 89.99955 * 16 14 12 18 18 H 1.48498 * 109.46933 * 209.99877 * 16 14 12 19 19 H 1.48498 * 109.46915 * 329.99929 * 16 14 12 20 20 C 1.52997 * 60.03377 * 107.47695 * 4 2 1 21 21 C 1.52997 * 117.49881 * 107.50173 * 20 4 2 22 22 C 1.52996 * 117.50025 * 252.52011 * 20 4 2 23 23 H 1.08998 * 109.47136 * 325.71891 * 1 2 3 24 24 H 1.09001 * 109.46719 * 85.72122 * 1 2 3 25 25 H 1.09001 * 109.46908 * 205.71653 * 1 2 3 26 26 H 1.08995 * 109.47107 * 154.27678 * 3 2 1 27 27 H 1.08994 * 109.47112 * 274.27972 * 3 2 1 28 28 H 1.08998 * 109.46889 * 34.27699 * 3 2 1 29 29 H 1.09005 * 117.49999 * 359.97161 * 4 2 1 30 30 H 1.09003 * 109.47011 * 311.55483 * 5 4 2 31 31 H 1.09002 * 109.47415 * 191.56312 * 5 4 2 32 32 H 0.96997 * 120.00203 * 359.97438 * 6 5 4 33 33 H 0.97004 * 120.00006 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.46999 * 299.99808 * 10 9 7 35 35 H 1.08995 * 109.47177 * 60.00433 * 10 9 7 36 36 H 1.08996 * 109.47094 * 299.99749 * 11 10 9 37 37 H 1.08995 * 109.47336 * 60.00188 * 11 10 9 38 38 H 0.97005 * 119.99637 * 180.02562 * 15 14 12 39 39 H 1.08991 * 109.47413 * 172.93077 * 21 20 4 40 40 H 1.09008 * 109.46866 * 292.93000 * 21 20 4 41 41 H 1.09000 * 109.47523 * 52.92373 * 21 20 4 42 42 H 1.09007 * 109.47104 * 8.60719 * 22 20 4 43 43 H 1.09000 * 109.47589 * 128.60545 * 22 20 4 44 44 H 1.08996 * 109.47393 * 248.61007 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 3.5490 -0.7754 1.4717 6 7 3.2693 0.0659 2.6379 7 6 4.2815 0.4958 3.4172 8 8 5.4268 0.1856 3.1519 9 7 4.0242 1.2692 4.4904 10 6 5.1245 1.7369 5.3370 11 6 4.5638 2.5894 6.4772 12 6 5.6956 3.0699 7.3485 13 1 6.7130 2.7945 7.1128 14 6 5.4322 3.8603 8.4471 15 7 4.1932 4.1952 8.7343 16 14 6.8351 4.4554 9.5276 17 1 7.3325 5.7591 9.0194 18 1 6.3507 4.6197 10.9217 19 1 7.9372 3.4605 9.5003 20 6 2.2367 -1.1221 -0.7647 21 6 3.5494 -0.7780 -1.4712 22 6 1.3589 -2.1576 -1.4704 23 1 -0.3633 0.8491 0.5788 24 1 -0.3633 0.0767 -1.0248 25 1 -0.3633 -0.9259 0.4459 26 1 3.1818 1.3090 0.4460 27 1 2.2774 1.7413 -1.0247 28 1 1.5804 2.0744 0.5788 29 1 1.6113 -1.8578 1.2692 30 1 4.2013 -0.2375 0.7837 31 1 4.0400 -1.6932 1.7951 32 1 2.3557 0.3142 2.8489 33 1 3.1104 1.5163 4.7022 34 1 5.6538 0.8791 5.7516 35 1 5.8130 2.3352 4.7404 36 1 4.0342 3.4473 6.0630 37 1 3.8754 1.9908 7.0738 38 1 4.0080 4.7516 9.5070 39 1 3.4380 -0.9390 -2.5434 40 1 3.7996 0.2664 -1.2847 41 1 4.3461 -1.4162 -1.0888 42 1 0.7295 -2.6611 -0.7365 43 1 0.7296 -1.6588 -2.2075 44 1 1.9921 -2.8908 -1.9699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354249044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:44 Heat of formation + Delta-G solvation = -33.825236 kcal Electronic energy + Delta-G solvation = -20550.115882 eV Core-core repulsion = 17502.352614 eV Total energy + Delta-G solvation = -3047.763268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33793 -39.09984 -34.96063 -34.09442 -32.77216 -31.40677 -29.98616 -29.00433 -28.41663 -26.47331 -25.40087 -24.14244 -21.01814 -20.48123 -19.72455 -18.03366 -17.70984 -16.35521 -16.01792 -15.67265 -15.10106 -14.77500 -14.52833 -14.38922 -13.99572 -13.54378 -13.37283 -13.26408 -12.92269 -12.64811 -12.52420 -12.34852 -12.25463 -12.20692 -12.05213 -11.99936 -11.23857 -11.15539 -11.00811 -10.99107 -10.60868 -10.28178 -10.04159 -9.74655 -9.54621 -9.48066 -9.22358 -8.90158 -8.45121 -8.17992 -6.06988 -4.09393 2.94418 3.31309 3.37237 3.41652 3.51866 3.67262 4.27519 4.37939 4.41836 4.45588 4.79161 4.82461 4.88778 5.08431 5.20751 5.30148 5.31943 5.33793 5.42515 5.55889 5.60578 5.67652 5.70145 5.73757 5.75566 5.78910 5.81635 5.93553 6.03969 6.12029 6.22910 6.35160 6.44224 6.70105 6.82226 7.06428 7.32858 7.60886 7.66833 7.92647 8.29464 8.51257 8.95978 9.07506 9.55222 11.04728 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040847 B = 0.002964 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.318898 B = 9442.902630 C = 9769.728426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C -0.123 4.123 4 C -0.157 4.157 5 C 0.168 3.832 6 N -0.749 5.749 7 C 0.697 3.303 8 O -0.601 6.601 9 N -0.739 5.739 10 C 0.141 3.859 11 C 0.013 3.987 12 C -0.520 4.520 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.394 0.606 33 H 0.393 0.607 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 -10.121 -20.209 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.113 4.113 3 C -0.180 4.180 4 C -0.176 4.176 5 C 0.044 3.956 6 N -0.405 5.405 7 C 0.397 3.603 8 O -0.480 6.480 9 N -0.393 5.393 10 C 0.018 3.982 11 C -0.024 4.024 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.109 4.109 21 C -0.181 4.181 22 C -0.170 4.170 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.227 0.773 33 H 0.225 0.775 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.651 -10.305 -20.300 24.354 hybrid contribution -0.256 0.558 0.931 1.115 sum -8.907 -9.747 -19.369 23.441 Atomic orbital electron populations 1.21345 0.92081 1.01965 1.01737 1.21747 0.94569 0.91318 1.03712 1.21462 1.01147 0.93687 1.01699 1.22977 0.98917 1.02003 0.93690 1.20600 0.94480 0.94349 0.86164 1.45096 1.08916 1.56570 1.29949 1.16078 0.84669 0.79368 0.80169 1.90882 1.19937 1.63029 1.74124 1.45522 1.11612 1.53939 1.28209 1.21569 0.87554 0.97720 0.91387 1.19321 0.97125 0.94401 0.91593 1.21065 0.93348 1.31307 1.10150 0.92226 1.24998 0.95718 0.96049 0.97563 1.69962 1.18425 1.37082 1.27938 0.86512 0.82262 0.79207 0.79576 1.20569 1.21196 1.19718 1.21683 0.98071 0.99386 0.91726 1.21449 0.94765 1.02190 0.99722 1.21322 0.98576 0.97148 0.99935 0.92044 0.92288 0.92496 0.91277 0.92346 0.92057 0.87451 0.91345 0.91663 0.77262 0.77459 0.92863 0.92862 0.96003 0.95997 0.92891 0.92186 0.91659 0.91849 0.92441 0.92173 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 8.88 37.16 0.33 -0.48 16 2 C -0.11 -0.94 2.70 -154.47 -0.42 -1.36 16 3 C -0.12 -1.13 8.01 37.16 0.30 -0.83 16 4 C -0.16 -1.41 5.09 -90.62 -0.46 -1.87 16 5 C 0.17 1.99 4.58 -4.04 -0.02 1.97 16 6 N -0.75 -9.85 4.97 -65.22 -0.32 -10.17 16 7 C 0.70 12.56 8.57 -86.92 -0.74 11.82 16 8 O -0.60 -13.29 16.34 5.29 0.09 -13.20 16 9 N -0.74 -13.44 5.56 -65.23 -0.36 -13.80 16 10 C 0.14 3.10 5.61 -4.04 -0.02 3.07 16 11 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.11 -0.87 2.70 -154.48 -0.42 -1.29 16 21 C -0.12 -1.02 8.28 37.16 0.31 -0.71 16 22 C -0.11 -0.75 8.80 37.16 0.33 -0.42 16 23 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 24 H 0.06 0.39 8.02 -51.93 -0.42 -0.03 16 25 H 0.06 0.38 7.78 -51.93 -0.40 -0.03 16 26 H 0.07 0.75 5.08 -51.93 -0.26 0.49 16 27 H 0.06 0.50 7.85 -51.93 -0.41 0.09 16 28 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 29 H 0.11 0.91 7.96 -51.93 -0.41 0.50 16 30 H 0.07 0.87 5.22 -51.93 -0.27 0.60 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.39 4.27 8.49 -40.82 -0.35 3.92 16 33 H 0.39 6.15 8.49 -40.82 -0.35 5.81 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.06 0.42 8.02 -51.93 -0.42 0.01 16 40 H 0.06 0.57 5.61 -51.92 -0.29 0.28 16 41 H 0.06 0.54 7.84 -51.93 -0.41 0.13 16 42 H 0.06 0.36 7.78 -51.92 -0.40 -0.04 16 43 H 0.06 0.37 8.02 -51.93 -0.42 -0.05 16 44 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -31.98 350.72 -8.67 -40.65 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.70 Total: 3.59 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.37 Total: -3.28 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.05 Total: -49.60 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.98 -8.67 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354249044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.829 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds