Wall clock time and date at job start Mon Mar 30 2020 01:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 115.54764 * 2 1 4 4 C 1.52993 * 117.49959 * 145.67308 * 2 1 3 5 5 C 1.53002 * 117.49764 * 214.98314 * 4 2 1 6 6 N 1.46498 * 109.47325 * 71.55836 * 5 4 2 7 7 C 1.34784 * 119.99976 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34766 * 120.00094 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00124 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46689 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99837 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00106 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46957 * 89.99955 * 16 14 12 18 18 H 1.48498 * 109.46933 * 209.99877 * 16 14 12 19 19 H 1.48498 * 109.46915 * 329.99929 * 16 14 12 20 20 C 1.52997 * 60.03377 * 107.47695 * 4 2 1 21 21 C 1.52997 * 117.49881 * 107.50173 * 20 4 2 22 22 C 1.52996 * 117.50025 * 252.52011 * 20 4 2 23 23 H 1.08998 * 109.47136 * 325.71891 * 1 2 3 24 24 H 1.09001 * 109.46719 * 85.72122 * 1 2 3 25 25 H 1.09001 * 109.46908 * 205.71653 * 1 2 3 26 26 H 1.08995 * 109.47107 * 154.27678 * 3 2 1 27 27 H 1.08994 * 109.47112 * 274.27972 * 3 2 1 28 28 H 1.08998 * 109.46889 * 34.27699 * 3 2 1 29 29 H 1.09005 * 117.49999 * 359.97161 * 4 2 1 30 30 H 1.09003 * 109.47011 * 311.55483 * 5 4 2 31 31 H 1.09002 * 109.47415 * 191.56312 * 5 4 2 32 32 H 0.96997 * 120.00203 * 359.97438 * 6 5 4 33 33 H 0.97004 * 120.00006 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.46999 * 299.99808 * 10 9 7 35 35 H 1.08995 * 109.47177 * 60.00433 * 10 9 7 36 36 H 1.08996 * 109.47094 * 299.99749 * 11 10 9 37 37 H 1.08995 * 109.47336 * 60.00188 * 11 10 9 38 38 H 0.97005 * 119.99637 * 180.02562 * 15 14 12 39 39 H 1.08991 * 109.47413 * 172.93077 * 21 20 4 40 40 H 1.09008 * 109.46866 * 292.93000 * 21 20 4 41 41 H 1.09000 * 109.47523 * 52.92373 * 21 20 4 42 42 H 1.09007 * 109.47104 * 8.60719 * 22 20 4 43 43 H 1.09000 * 109.47589 * 128.60545 * 22 20 4 44 44 H 1.08996 * 109.47393 * 248.61007 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 3.5490 -0.7754 1.4717 6 7 3.2693 0.0659 2.6379 7 6 4.2815 0.4958 3.4172 8 8 5.4268 0.1856 3.1519 9 7 4.0242 1.2692 4.4904 10 6 5.1245 1.7369 5.3370 11 6 4.5638 2.5894 6.4772 12 6 5.6956 3.0699 7.3485 13 1 6.7130 2.7945 7.1128 14 6 5.4322 3.8603 8.4471 15 7 4.1932 4.1952 8.7343 16 14 6.8351 4.4554 9.5276 17 1 7.3325 5.7591 9.0194 18 1 6.3507 4.6197 10.9217 19 1 7.9372 3.4605 9.5003 20 6 2.2367 -1.1221 -0.7647 21 6 3.5494 -0.7780 -1.4712 22 6 1.3589 -2.1576 -1.4704 23 1 -0.3633 0.8491 0.5788 24 1 -0.3633 0.0767 -1.0248 25 1 -0.3633 -0.9259 0.4459 26 1 3.1818 1.3090 0.4460 27 1 2.2774 1.7413 -1.0247 28 1 1.5804 2.0744 0.5788 29 1 1.6113 -1.8578 1.2692 30 1 4.2013 -0.2375 0.7837 31 1 4.0400 -1.6932 1.7951 32 1 2.3557 0.3142 2.8489 33 1 3.1104 1.5163 4.7022 34 1 5.6538 0.8791 5.7516 35 1 5.8130 2.3352 4.7404 36 1 4.0342 3.4473 6.0630 37 1 3.8754 1.9908 7.0738 38 1 4.0080 4.7516 9.5070 39 1 3.4380 -0.9390 -2.5434 40 1 3.7996 0.2664 -1.2847 41 1 4.3461 -1.4162 -1.0888 42 1 0.7295 -2.6611 -0.7365 43 1 0.7296 -1.6588 -2.2075 44 1 1.9921 -2.8908 -1.9699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354249044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:44 Heat of formation + Delta-G solvation = -54.011341 kcal Electronic energy + Delta-G solvation = -20550.991217 eV Core-core repulsion = 17502.352614 eV Total energy + Delta-G solvation = -3048.638604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32430 -40.31872 -36.67251 -35.43142 -34.77709 -32.03020 -31.66737 -29.88508 -29.34448 -27.08120 -26.87506 -25.55969 -22.91626 -21.94790 -20.62713 -19.16665 -18.61829 -18.38375 -17.20742 -16.95070 -16.48923 -16.14491 -15.76412 -15.40099 -15.27012 -14.90248 -14.77489 -14.30550 -14.14013 -13.65123 -13.33229 -13.20633 -13.20426 -13.07360 -12.92265 -12.89913 -12.73754 -12.63903 -12.51848 -12.23237 -12.01607 -11.68435 -11.63219 -11.51375 -11.25346 -10.60176 -10.50156 -10.34621 -10.14994 -9.66876 -8.23633 -6.33852 1.42160 1.42867 1.54233 1.73415 2.18814 2.41402 2.69247 3.11174 3.41217 3.56632 3.71457 3.83515 4.14671 4.21387 4.29350 4.45936 4.52491 4.54718 4.60964 4.75185 4.76631 4.81207 4.87270 4.94135 4.99274 5.07128 5.08900 5.12094 5.15502 5.18752 5.26330 5.32138 5.41383 5.42876 5.51681 5.54364 5.58038 5.60196 5.79758 6.07549 6.18041 6.79324 7.15506 7.35484 7.62146 8.88359 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040847 B = 0.002964 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.318898 B = 9442.902630 C = 9769.728426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.122 4.122 4 C -0.160 4.160 5 C 0.169 3.831 6 N -0.726 5.726 7 C 0.697 3.303 8 O -0.643 6.643 9 N -0.733 5.733 10 C 0.161 3.839 11 C 0.025 3.975 12 C -0.547 4.547 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.103 4.103 21 C -0.126 4.126 22 C -0.111 4.111 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.409 0.591 33 H 0.406 0.594 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 -10.491 -20.907 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.110 4.110 3 C -0.179 4.179 4 C -0.179 4.179 5 C 0.046 3.954 6 N -0.382 5.382 7 C 0.396 3.604 8 O -0.525 6.525 9 N -0.388 5.388 10 C 0.037 3.963 11 C -0.013 4.013 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.103 4.103 21 C -0.183 4.183 22 C -0.168 4.168 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.245 0.755 33 H 0.242 0.758 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.570 -10.686 -21.026 25.453 hybrid contribution -0.016 0.663 1.084 1.271 sum -9.586 -10.024 -19.942 24.291 Atomic orbital electron populations 1.21346 0.90728 1.02414 1.02395 1.21785 0.95430 0.90563 1.03226 1.21432 1.00054 0.94499 1.01906 1.22890 0.97662 1.02969 0.94341 1.20652 0.96171 0.93230 0.85368 1.44933 1.08575 1.55481 1.29230 1.16186 0.84870 0.79090 0.80209 1.90854 1.21994 1.64514 1.75136 1.45208 1.11418 1.54128 1.28064 1.21058 0.88081 0.96532 0.90672 1.19117 0.96132 0.93999 0.92010 1.21471 0.94058 1.31878 1.11114 0.92338 1.25870 0.98359 0.96030 0.98896 1.70061 1.20355 1.37601 1.28610 0.85443 0.79045 0.78841 0.77708 1.19724 1.20454 1.19106 1.21793 0.98111 0.99562 0.90881 1.21463 0.94793 1.01446 1.00632 1.21334 0.98499 0.96802 1.00130 0.91991 0.91471 0.91744 0.93347 0.91781 0.91898 0.86361 0.92317 0.92796 0.75532 0.75845 0.93981 0.93930 0.97294 0.97318 0.92532 0.90861 0.92603 0.92530 0.91872 0.91300 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.88 71.98 0.64 -0.66 16 2 C -0.11 -1.62 2.70 -52.16 -0.14 -1.76 16 3 C -0.12 -2.11 8.01 71.98 0.58 -1.53 16 4 C -0.16 -2.62 5.09 -10.80 -0.05 -2.68 16 5 C 0.17 3.94 4.58 86.38 0.40 4.33 16 6 N -0.73 -18.66 4.97 -478.53 -2.38 -21.04 16 7 C 0.70 25.11 8.57 179.06 1.53 26.65 16 8 O -0.64 -28.88 16.34 -3.98 -0.07 -28.94 16 9 N -0.73 -26.67 5.56 -478.54 -2.66 -29.33 16 10 C 0.16 7.20 5.61 86.38 0.48 7.68 16 11 C 0.02 1.28 5.09 29.85 0.15 1.43 16 12 C -0.55 -30.99 9.11 25.60 0.23 -30.76 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 14 C 0.01 0.40 5.46 84.65 0.46 0.87 16 15 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 16 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C -0.10 -1.47 2.70 -52.16 -0.14 -1.61 16 21 C -0.13 -1.94 8.28 71.98 0.60 -1.35 16 22 C -0.11 -1.18 8.80 71.98 0.63 -0.55 16 23 H 0.06 0.72 7.92 -2.39 -0.02 0.70 16 24 H 0.07 0.69 8.02 -2.39 -0.02 0.67 16 25 H 0.06 0.67 7.78 -2.39 -0.02 0.65 16 26 H 0.05 1.04 5.08 -2.39 -0.01 1.03 16 27 H 0.06 1.02 7.85 -2.39 -0.02 1.01 16 28 H 0.06 1.05 7.92 -2.39 -0.02 1.03 16 29 H 0.12 1.73 7.96 -2.38 -0.02 1.71 16 30 H 0.06 1.51 5.22 -2.39 -0.01 1.50 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.41 8.28 8.49 -92.71 -0.79 7.49 16 33 H 0.41 12.53 8.49 -92.71 -0.79 11.74 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 39 H 0.07 0.92 8.02 -2.39 -0.02 0.90 16 40 H 0.06 0.96 5.61 -2.38 -0.01 0.95 16 41 H 0.06 0.94 7.84 -2.39 -0.02 0.92 16 42 H 0.06 0.62 7.78 -2.38 -0.02 0.60 16 43 H 0.07 0.64 8.02 -2.39 -0.02 0.62 16 44 H 0.06 0.65 8.09 -2.39 -0.02 0.63 16 Total: -1.00 -68.14 350.72 1.99 -66.15 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.59 Total: 21.46 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.37 Total: 0.07 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -4.75 Total: -104.75 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.07 Total: -28.94 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.14 1.99 -66.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354249044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.139 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds