Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47404 * 2 1 4 4 C 1.53000 * 109.46858 * 240.00071 * 2 1 3 5 5 C 1.50694 * 109.47423 * 59.99937 * 4 2 1 6 6 H 1.08006 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00394 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99833 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00105 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46713 * 60.00450 * 9 7 5 11 11 H 1.48506 * 109.46970 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47344 * 300.00435 * 9 7 5 13 13 C 1.53000 * 109.47307 * 120.00248 * 2 1 3 14 14 N 1.46900 * 109.46959 * 319.25859 * 13 2 1 15 15 C 1.48529 * 111.00392 * 300.77319 * 14 13 2 16 16 C 1.54931 * 103.23116 * 200.28030 * 15 14 13 17 17 C 1.54601 * 102.92249 * 37.41046 * 16 15 14 18 18 C 1.52992 * 110.39422 * 97.00433 * 17 16 15 19 19 C 1.50698 * 110.30805 * 219.13053 * 17 16 15 20 20 N 1.34777 * 119.99946 * 295.43542 * 19 17 16 21 21 O 1.21281 * 120.00138 * 115.71410 * 19 17 16 22 22 C 1.47902 * 111.00288 * 183.37138 * 14 13 2 23 23 H 1.09004 * 109.46404 * 299.99877 * 1 2 3 24 24 H 1.09001 * 109.47003 * 59.99735 * 1 2 3 25 25 H 1.08999 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47239 * 168.81109 * 3 2 1 27 27 H 1.09000 * 109.47279 * 288.80542 * 3 2 1 28 28 H 1.08997 * 109.47356 * 48.80709 * 3 2 1 29 29 H 1.09001 * 109.47206 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.46945 * 299.99937 * 4 2 1 31 31 H 0.97000 * 120.00122 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47058 * 199.26088 * 13 2 1 33 33 H 1.09000 * 109.47149 * 79.26032 * 13 2 1 34 34 H 1.09000 * 110.66405 * 318.71206 * 15 14 13 35 35 H 1.08994 * 110.67159 * 81.83710 * 15 14 13 36 36 H 1.09002 * 110.72447 * 279.05300 * 16 15 14 37 37 H 1.08996 * 110.72821 * 155.76646 * 16 15 14 38 38 H 1.08992 * 109.47522 * 182.84541 * 18 17 16 39 39 H 1.08999 * 109.47213 * 302.84763 * 18 17 16 40 40 H 1.08997 * 109.47189 * 62.84619 * 18 17 16 41 41 H 0.97001 * 120.00026 * 180.27475 * 20 19 17 42 42 H 0.96995 * 120.00446 * 0.28343 * 20 19 17 43 43 H 1.09003 * 109.91477 * 26.49237 * 22 14 13 44 44 H 1.08997 * 110.08677 * 265.29266 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 1.7419 1.7990 -5.2571 11 1 1.7428 -0.3015 -6.4697 12 1 -0.2372 0.3976 -5.2572 13 6 2.0401 -0.7213 1.2492 14 7 1.2140 -0.3442 2.4039 15 6 1.2557 1.1228 2.6320 16 6 0.8109 1.2648 4.1093 17 6 1.4687 0.0411 4.7876 18 6 2.7878 0.4437 5.4498 19 6 0.5339 -0.5572 5.8069 20 7 0.1793 0.1540 6.8954 21 8 0.1046 -1.6807 5.6503 22 6 1.7272 -0.9604 3.6467 23 1 -0.3632 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1117 1.4489 0.1994 27 1 1.8489 1.8954 -0.9728 28 1 1.5231 2.0106 0.7733 29 1 3.1300 -0.7217 -1.2491 30 1 1.6766 -1.7489 -1.2492 31 1 2.8615 -1.8824 -4.7337 32 1 3.0758 -0.4373 1.4353 33 1 1.9806 -1.7989 1.0963 34 1 2.2677 1.5045 2.4967 35 1 0.5585 1.6353 1.9693 36 1 -0.2748 1.2142 4.1918 37 1 1.1886 2.1928 4.5384 38 1 3.2629 -0.4383 5.8791 39 1 3.4486 0.8858 4.7043 40 1 2.5916 1.1705 6.2381 41 1 -0.4193 -0.2326 7.5535 42 1 0.5225 1.0525 7.0207 43 1 2.7967 -1.1489 3.5533 44 1 1.2018 -1.8943 3.8462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355725023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -68.453298 kcal Electronic energy + Delta-G solvation = -21755.835219 eV Core-core repulsion = 18706.570365 eV Total energy + Delta-G solvation = -3049.264854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59405 -39.80053 -37.58592 -35.09265 -34.45489 -32.94102 -30.83253 -29.14178 -27.92352 -27.44162 -26.56507 -24.74235 -23.51110 -22.04238 -20.30513 -19.54661 -18.37775 -18.26452 -17.69550 -16.72254 -16.32648 -16.16342 -15.68040 -15.62389 -15.14408 -14.83631 -14.48993 -14.21296 -14.04039 -13.70144 -13.50813 -13.17903 -13.06085 -12.91817 -12.78331 -12.63233 -12.49537 -12.33121 -12.15370 -11.94887 -11.89472 -11.76749 -11.56899 -11.33688 -10.85564 -10.76523 -10.64071 -10.58253 -10.49352 -9.23576 -8.13104 -6.20554 1.41008 1.44022 1.51140 1.65258 2.44344 2.57613 3.10986 3.20548 3.40823 3.65595 3.93731 4.10685 4.17248 4.22227 4.34694 4.39332 4.44238 4.62901 4.72064 4.76027 4.85197 4.88877 4.94123 4.96507 4.99605 5.07066 5.12001 5.15632 5.17581 5.27238 5.30094 5.53015 5.55265 5.60914 5.68079 5.87248 5.92393 5.93783 6.07272 6.16051 6.36678 6.49101 6.94161 7.38399 7.46598 8.99326 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042827 B = 0.003928 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.638073 B = 7126.594690 C = 7210.031269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.053 4.053 3 C -0.138 4.138 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.068 0.932 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.265 1.265 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.069 3.931 14 N -0.518 5.518 15 C 0.025 3.975 16 C -0.102 4.102 17 C -0.086 4.086 18 C -0.133 4.133 19 C 0.530 3.470 20 N -0.831 5.831 21 O -0.591 6.591 22 C 0.042 3.958 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.084 0.916 29 H -0.016 1.016 30 H -0.022 1.022 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.407 0.593 42 H 0.418 0.582 43 H 0.048 0.952 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 11.042 22.928 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.054 4.054 3 C -0.195 4.195 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.059 4.059 14 N -0.242 5.242 15 C -0.102 4.102 16 C -0.140 4.140 17 C -0.090 4.090 18 C -0.190 4.190 19 C 0.315 3.685 20 N -0.395 5.395 21 O -0.471 6.471 22 C -0.086 4.086 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.002 0.998 30 H -0.004 1.004 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.239 0.761 42 H 0.250 0.750 43 H 0.067 0.933 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.214 10.048 22.442 24.688 hybrid contribution 0.724 -0.163 -0.937 1.195 sum -1.491 9.885 21.505 23.715 Atomic orbital electron populations 1.21538 0.94361 0.99910 1.00397 1.20461 0.96259 0.95829 0.92804 1.22191 0.99713 0.95402 1.02189 1.18990 0.93934 0.93829 0.92829 1.21586 1.30274 1.11987 0.91366 0.91410 1.25955 0.95677 0.95907 1.02675 1.70117 1.38893 1.24991 1.24095 0.85603 0.78873 0.78875 0.78328 1.18951 1.21409 1.19414 1.22220 0.93898 0.98933 0.90865 1.64794 1.49766 1.07760 1.01919 1.23718 1.01067 0.88652 0.96720 1.22675 1.00793 0.96644 0.93911 1.21557 0.96807 0.96759 0.93893 1.21900 0.93387 1.02308 1.01429 1.20576 0.80479 0.84766 0.82673 1.43613 1.51722 1.20425 1.23708 1.90724 1.57259 1.21708 1.77450 1.22918 0.98502 0.98438 0.88754 0.91011 0.94255 0.95863 0.94153 0.93552 0.89786 0.99784 1.00353 0.93178 0.94949 0.93599 0.92416 0.88870 0.90916 0.86350 0.92513 0.90900 0.88672 0.76122 0.75015 0.93341 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.19 7.70 71.98 0.55 -3.63 16 2 C -0.05 -2.18 0.52 -52.18 -0.03 -2.21 16 3 C -0.14 -4.93 7.36 71.98 0.53 -4.40 16 4 C 0.04 2.24 3.95 29.85 0.12 2.36 16 5 C -0.51 -29.01 7.50 25.60 0.19 -28.81 16 6 H 0.07 3.63 5.75 -2.91 -0.02 3.61 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -58.72 13.29 21.45 0.28 -58.43 16 9 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 C 0.07 2.55 4.23 86.30 0.36 2.91 16 14 N -0.52 -15.87 4.27 -883.05 -3.77 -19.65 16 15 C 0.03 0.58 4.07 86.65 0.35 0.93 16 16 C -0.10 -1.62 6.13 31.80 0.20 -1.43 16 17 C -0.09 -1.61 0.81 -52.05 -0.04 -1.66 16 18 C -0.13 -1.61 8.10 71.98 0.58 -1.03 16 19 C 0.53 11.21 6.66 87.66 0.58 11.80 16 20 N -0.83 -8.77 8.74 -173.53 -1.52 -10.29 16 21 O -0.59 -19.23 16.07 -3.03 -0.05 -19.28 16 22 C 0.04 1.17 5.97 86.45 0.52 1.69 16 23 H 0.07 2.44 5.35 -2.39 -0.01 2.42 16 24 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 1.39 7.89 -2.39 -0.02 1.37 16 27 H 0.05 1.84 6.33 -2.39 -0.02 1.83 16 28 H 0.08 2.36 4.37 -2.39 -0.01 2.35 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H -0.02 -1.32 8.13 -2.39 -0.02 -1.34 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.03 1.14 7.66 -2.39 -0.02 1.13 16 33 H 0.05 1.89 7.99 -2.39 -0.02 1.87 16 34 H 0.06 1.26 7.14 -2.39 -0.02 1.24 16 35 H 0.09 2.21 4.75 -2.39 -0.01 2.20 16 36 H 0.07 1.26 7.86 -2.39 -0.02 1.24 16 37 H 0.12 0.96 7.86 -2.39 -0.02 0.94 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.50 7.49 -2.39 -0.02 0.49 16 41 H 0.41 3.67 8.93 -92.71 -0.83 2.85 16 42 H 0.42 1.37 8.16 -92.71 -0.76 0.62 16 43 H 0.05 1.31 7.22 -2.39 -0.02 1.29 16 44 H 0.07 2.36 6.42 -2.39 -0.02 2.35 16 Total: -1.00 -75.75 328.48 0.78 -74.97 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -0.57 Total: 9.00 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.38 Total: -23.34 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -5.01 Total: -88.36 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.75 0.78 -74.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355725023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.518 kcal (2) G-P(sol) polarization free energy of solvation -75.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds