Wall clock time and date at job start Mon Mar 30 2020 01:25:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86801 * 119.99987 * 2 1
4 4 H 1.48500 * 109.46790 * 269.99733 * 3 2 1
5 5 H 1.48506 * 109.47228 * 29.99252 * 3 2 1
6 6 H 1.48493 * 109.47450 * 149.99652 * 3 2 1
7 7 C 1.37879 * 120.00155 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99867 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99749 * 0.02562 * 7 2 1
10 10 C 1.53001 * 109.46742 * 180.02562 * 9 7 2
11 11 C 1.50697 * 109.46932 * 180.02562 * 10 9 7
12 12 O 1.21285 * 120.00380 * 359.97438 * 11 10 9
13 13 N 1.34782 * 119.99899 * 180.02562 * 11 10 9
14 14 C 1.46502 * 119.99813 * 179.97438 * 13 11 10
15 15 C 1.53001 * 109.46846 * 180.02562 * 14 13 11
16 16 C 1.53004 * 109.47116 * 180.02562 * 15 14 13
17 17 N 1.46897 * 109.47166 * 179.97438 * 16 15 14
18 18 C 1.46854 * 110.99665 * 170.00131 * 17 16 15
19 19 C 1.53037 * 109.51886 * 185.84309 * 18 17 16
20 20 C 1.53126 * 109.27801 * 300.81620 * 19 18 17
21 21 C 1.53124 * 109.15878 * 57.65645 * 20 19 18
22 22 C 1.46844 * 111.00090 * 294.20807 * 17 16 15
23 23 H 0.96999 * 119.99869 * 0.02562 * 1 2 3
24 24 H 1.08995 * 109.47044 * 60.00085 * 9 7 2
25 25 H 1.09003 * 109.46968 * 299.99631 * 9 7 2
26 26 H 1.08995 * 109.47303 * 60.00218 * 10 9 7
27 27 H 1.09003 * 109.47473 * 299.99899 * 10 9 7
28 28 H 0.96994 * 119.99957 * 359.97438 * 13 11 10
29 29 H 1.08995 * 109.47036 * 60.00013 * 14 13 11
30 30 H 1.09004 * 109.47474 * 300.00082 * 14 13 11
31 31 H 1.08995 * 109.47303 * 60.00164 * 15 14 13
32 32 H 1.09003 * 109.47067 * 299.99491 * 15 14 13
33 33 H 1.09004 * 109.46918 * 59.99611 * 16 15 14
34 34 H 1.09003 * 109.46728 * 300.00185 * 16 15 14
35 35 H 1.08994 * 109.46310 * 65.82535 * 18 17 16
36 36 H 1.09004 * 109.45830 * 305.85222 * 18 17 16
37 37 H 1.09000 * 109.50480 * 180.88135 * 19 18 17
38 38 H 1.08992 * 109.50737 * 60.75564 * 19 18 17
39 39 H 1.08998 * 109.52297 * 177.56592 * 20 19 18
40 40 H 1.08999 * 109.51925 * 297.75795 * 20 19 18
41 41 H 1.08999 * 109.50059 * 62.28737 * 21 20 19
42 42 H 1.08993 * 109.49981 * 182.40384 * 21 20 19
43 43 H 1.09002 * 109.46133 * 294.17882 * 22 17 16
44 44 H 1.09002 * 109.46211 * 54.14407 * 22 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6528 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0005
10 6 2.2454 -3.6620 0.0018
11 6 1.4919 -4.9671 0.0012
12 8 0.2791 -4.9672 0.0003
13 7 2.1659 -6.1343 0.0026
14 6 1.4333 -7.4031 0.0026
15 6 2.4276 -8.5659 0.0050
16 6 1.6627 -9.8910 0.0044
17 7 2.6173 -11.0075 0.0061
18 6 1.9327 -12.2848 0.2435
19 6 2.9691 -13.4021 0.3836
20 6 3.8048 -13.4800 -0.8971
21 6 4.4682 -12.1228 -1.1475
22 6 3.3884 -11.0426 -1.2431
23 1 -0.4850 0.8400 -0.0004
24 1 0.6248 -2.5571 -0.8896
25 1 0.6241 -2.5567 0.8904
26 1 2.8713 -3.6039 0.8922
27 1 2.8727 -3.6047 -0.8877
28 1 3.1358 -6.1343 0.0037
29 1 0.8077 -7.4613 -0.8880
30 1 0.8056 -7.4603 0.8919
31 1 3.0529 -8.5075 0.8959
32 1 3.0556 -8.5090 -0.8841
33 1 1.0376 -9.9492 -0.8868
34 1 1.0344 -9.9483 0.8932
35 1 1.2728 -12.5047 -0.5956
36 1 1.3454 -12.2173 1.1594
37 1 2.4601 -14.3526 0.5443
38 1 3.6208 -13.1899 1.2310
39 1 4.5725 -14.2456 -0.7851
40 1 3.1590 -13.7306 -1.7387
41 1 5.1435 -11.8905 -0.3241
42 1 5.0302 -12.1592 -2.0807
43 1 2.7215 -11.2683 -2.0753
44 1 3.8583 -10.0729 -1.4072
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000359846621.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:25:51
Heat of formation + Delta-G solvation = -67.058833 kcal
Electronic energy + Delta-G solvation = -19831.695442 eV
Core-core repulsion = 16782.491057 eV
Total energy + Delta-G solvation = -3049.204385 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-39.50085 -38.98832 -35.74576 -33.84758 -33.41054 -31.40791 -31.13103 -30.35329
-26.50028 -25.18986 -23.64604 -23.15736 -21.43457 -21.26595 -20.05600 -19.44650
-16.83141 -16.61767 -15.96170 -15.58965 -15.32916 -15.18019 -14.79777 -14.69435
-14.38466 -14.12685 -13.79841 -13.50446 -12.97357 -12.84763 -12.53133 -12.20381
-12.02557 -11.84446 -11.63209 -11.53721 -11.19760 -11.12907 -11.00236 -10.90543
-10.72724 -10.58414 -10.55403 -9.92473 -9.63488 -9.14830 -8.97665 -8.73866
-8.64391 -8.29674 -5.93850 -3.98140 3.31028 3.34863 3.36936 3.41032
3.43825 3.75371 4.42400 4.45073 4.49587 4.54542 4.73580 4.83825
4.94154 4.96553 5.08494 5.13766 5.23628 5.29733 5.37704 5.40925
5.44817 5.50186 5.55140 5.58237 5.60383 5.73290 5.75006 5.81718
5.97372 6.01130 6.09500 6.26995 6.28706 6.72348 6.76966 6.81205
6.93414 7.77010 7.89531 7.94436 8.10041 8.41497 8.83420 9.10726
9.65177 11.17118
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.056849 B = 0.002335 C = 0.002272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 492.416306 B =11987.144353 C =12319.898986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.057 3.943
3 Si 0.893 3.107
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.527 4.527
8 H 0.056 0.944
9 C 0.036 3.964
10 C -0.130 4.130
11 C 0.508 3.492
12 O -0.536 6.536
13 N -0.745 5.745
14 C 0.120 3.880
15 C -0.126 4.126
16 C 0.058 3.942
17 N -0.538 5.538
18 C 0.055 3.945
19 C -0.117 4.117
20 C -0.122 4.122
21 C -0.117 4.117
22 C 0.050 3.950
23 H 0.261 0.739
24 H 0.023 0.977
25 H 0.023 0.977
26 H 0.079 0.921
27 H 0.079 0.921
28 H 0.397 0.603
29 H 0.061 0.939
30 H 0.063 0.937
31 H 0.078 0.922
32 H 0.068 0.932
33 H 0.037 0.963
34 H 0.078 0.922
35 H 0.032 0.968
36 H 0.075 0.925
37 H 0.065 0.935
38 H 0.071 0.929
39 H 0.063 0.937
40 H 0.057 0.943
41 H 0.071 0.929
42 H 0.065 0.935
43 H 0.032 0.968
44 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.784 -27.728 -1.136 29.108
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.145 4.145
3 Si 0.721 3.279
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.565 4.565
8 H 0.074 0.926
9 C -0.001 4.001
10 C -0.170 4.170
11 C 0.297 3.703
12 O -0.412 6.412
13 N -0.399 5.399
14 C -0.004 4.004
15 C -0.164 4.164
16 C -0.070 4.070
17 N -0.263 5.263
18 C -0.073 4.073
19 C -0.155 4.155
20 C -0.160 4.160
21 C -0.155 4.155
22 C -0.077 4.077
23 H 0.070 0.930
24 H 0.041 0.959
25 H 0.042 0.958
26 H 0.098 0.902
27 H 0.097 0.903
28 H 0.231 0.769
29 H 0.079 0.921
30 H 0.081 0.919
31 H 0.096 0.904
32 H 0.087 0.913
33 H 0.055 0.945
34 H 0.097 0.903
35 H 0.050 0.950
36 H 0.093 0.907
37 H 0.084 0.916
38 H 0.090 0.910
39 H 0.081 0.919
40 H 0.076 0.924
41 H 0.090 0.910
42 H 0.084 0.916
43 H 0.050 0.950
44 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 8.039 -27.531 -0.749 28.691
hybrid contribution 0.314 0.738 -0.705 1.068
sum 8.353 -26.794 -1.454 28.103
Atomic orbital electron populations
1.70001 1.06053 1.26550 1.50256 1.25038 0.94839 0.99246 0.95357
0.86582 0.79763 0.83502 0.78039 1.20693 1.21240 1.19892 1.21234
0.92935 0.91035 1.51285 0.92596 1.18899 0.93203 0.89404 0.98604
1.21860 1.00697 0.91995 1.02453 1.21564 0.88645 0.85698 0.74405
1.90666 1.14529 1.87699 1.48284 1.46185 1.10038 1.05613 1.78045
1.21160 0.94534 0.82709 1.02047 1.21784 0.98523 0.92823 1.03318
1.21997 0.93669 0.89951 1.01364 1.61903 1.26145 1.03062 1.35176
1.22085 0.95459 0.89115 1.00646 1.21586 0.97910 0.97496 0.98488
1.21591 0.99247 0.97388 0.97788 1.21588 0.97690 0.94224 1.02019
1.22169 0.95707 0.99875 0.89980 0.92971 0.95855 0.95828 0.90242
0.90298 0.76943 0.92102 0.91855 0.90373 0.91339 0.94517 0.90310
0.95000 0.90679 0.91641 0.91028 0.91859 0.92396 0.91027 0.91610
0.95008 0.90277
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16
2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16
4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16
7 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16
8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16
9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16
10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16
11 C 0.51 10.03 7.83 -10.98 -0.09 9.94 16
12 O -0.54 -13.01 15.98 5.55 0.09 -12.92 16
13 N -0.74 -10.62 5.56 -60.29 -0.33 -10.95 16
14 C 0.12 1.49 5.67 -4.04 -0.02 1.47 16
15 C -0.13 -1.14 5.26 -26.73 -0.14 -1.29 16
16 C 0.06 0.50 4.96 -3.82 -0.02 0.48 16
17 N -0.54 -4.50 4.66 -234.66 -1.09 -5.60 16
18 C 0.05 0.40 5.46 -3.83 -0.02 0.38 16
19 C -0.12 -0.74 6.09 -26.65 -0.16 -0.91 16
20 C -0.12 -0.75 6.00 -26.60 -0.16 -0.91 16
21 C -0.12 -0.78 6.09 -26.65 -0.16 -0.94 16
22 C 0.05 0.39 5.29 -3.84 -0.02 0.37 16
23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16
25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16
26 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16
27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16
28 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16
29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16
33 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16
34 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16
35 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16
36 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16
37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
43 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
44 H 0.08 0.60 6.21 -51.93 -0.32 0.28 16
LS Contribution 350.80 15.07 5.29 5.29
Total: -1.00 -34.04 350.80 -9.95 -43.99
By element:
Atomic # 1 Polarization: 5.73 SS G_CDS: -8.13 Total: -2.41 kcal
Atomic # 6 Polarization: -5.75 SS G_CDS: -1.48 Total: -7.24 kcal
Atomic # 7 Polarization: -42.87 SS G_CDS: -0.69 Total: -43.56 kcal
Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -34.04 -9.95 -43.99 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359846621.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.065 kcal
(2) G-P(sol) polarization free energy of solvation -34.042 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.107 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds