Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99987 * 2 1 4 4 H 1.48500 * 109.46790 * 269.99733 * 3 2 1 5 5 H 1.48506 * 109.47228 * 29.99252 * 3 2 1 6 6 H 1.48493 * 109.47450 * 149.99652 * 3 2 1 7 7 C 1.37879 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46742 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46932 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00380 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99813 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46846 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47116 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47166 * 179.97438 * 16 15 14 18 18 C 1.46854 * 110.99665 * 170.00131 * 17 16 15 19 19 C 1.53037 * 109.51886 * 185.84309 * 18 17 16 20 20 C 1.53126 * 109.27801 * 300.81620 * 19 18 17 21 21 C 1.53124 * 109.15878 * 57.65645 * 20 19 18 22 22 C 1.46844 * 111.00090 * 294.20807 * 17 16 15 23 23 H 0.96999 * 119.99869 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47044 * 60.00085 * 9 7 2 25 25 H 1.09003 * 109.46968 * 299.99631 * 9 7 2 26 26 H 1.08995 * 109.47303 * 60.00218 * 10 9 7 27 27 H 1.09003 * 109.47473 * 299.99899 * 10 9 7 28 28 H 0.96994 * 119.99957 * 359.97438 * 13 11 10 29 29 H 1.08995 * 109.47036 * 60.00013 * 14 13 11 30 30 H 1.09004 * 109.47474 * 300.00082 * 14 13 11 31 31 H 1.08995 * 109.47303 * 60.00164 * 15 14 13 32 32 H 1.09003 * 109.47067 * 299.99491 * 15 14 13 33 33 H 1.09004 * 109.46918 * 59.99611 * 16 15 14 34 34 H 1.09003 * 109.46728 * 300.00185 * 16 15 14 35 35 H 1.08994 * 109.46310 * 65.82535 * 18 17 16 36 36 H 1.09004 * 109.45830 * 305.85222 * 18 17 16 37 37 H 1.09000 * 109.50480 * 180.88135 * 19 18 17 38 38 H 1.08992 * 109.50737 * 60.75564 * 19 18 17 39 39 H 1.08998 * 109.52297 * 177.56592 * 20 19 18 40 40 H 1.08999 * 109.51925 * 297.75795 * 20 19 18 41 41 H 1.08999 * 109.50059 * 62.28737 * 21 20 19 42 42 H 1.08993 * 109.49981 * 182.40384 * 21 20 19 43 43 H 1.09002 * 109.46133 * 294.17882 * 22 17 16 44 44 H 1.09002 * 109.46211 * 54.14407 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0003 13 7 2.1659 -6.1343 0.0026 14 6 1.4333 -7.4031 0.0026 15 6 2.4276 -8.5659 0.0050 16 6 1.6627 -9.8910 0.0044 17 7 2.6173 -11.0075 0.0061 18 6 1.9327 -12.2848 0.2435 19 6 2.9691 -13.4021 0.3836 20 6 3.8048 -13.4800 -0.8971 21 6 4.4682 -12.1228 -1.1475 22 6 3.3884 -11.0426 -1.2431 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8877 28 1 3.1358 -6.1343 0.0037 29 1 0.8077 -7.4613 -0.8880 30 1 0.8056 -7.4603 0.8919 31 1 3.0529 -8.5075 0.8959 32 1 3.0556 -8.5090 -0.8841 33 1 1.0376 -9.9492 -0.8868 34 1 1.0344 -9.9483 0.8932 35 1 1.2728 -12.5047 -0.5956 36 1 1.3454 -12.2173 1.1594 37 1 2.4601 -14.3526 0.5443 38 1 3.6208 -13.1899 1.2310 39 1 4.5725 -14.2456 -0.7851 40 1 3.1590 -13.7306 -1.7387 41 1 5.1435 -11.8905 -0.3241 42 1 5.0302 -12.1592 -2.0807 43 1 2.7215 -11.2683 -2.0753 44 1 3.8583 -10.0729 -1.4072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359846621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = -67.058833 kcal Electronic energy + Delta-G solvation = -19831.695442 eV Core-core repulsion = 16782.491057 eV Total energy + Delta-G solvation = -3049.204385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.50085 -38.98832 -35.74576 -33.84758 -33.41054 -31.40791 -31.13103 -30.35329 -26.50028 -25.18986 -23.64604 -23.15736 -21.43457 -21.26595 -20.05600 -19.44650 -16.83141 -16.61767 -15.96170 -15.58965 -15.32916 -15.18019 -14.79777 -14.69435 -14.38466 -14.12685 -13.79841 -13.50446 -12.97357 -12.84763 -12.53133 -12.20381 -12.02557 -11.84446 -11.63209 -11.53721 -11.19760 -11.12907 -11.00236 -10.90543 -10.72724 -10.58414 -10.55403 -9.92473 -9.63488 -9.14830 -8.97665 -8.73866 -8.64391 -8.29674 -5.93850 -3.98140 3.31028 3.34863 3.36936 3.41032 3.43825 3.75371 4.42400 4.45073 4.49587 4.54542 4.73580 4.83825 4.94154 4.96553 5.08494 5.13766 5.23628 5.29733 5.37704 5.40925 5.44817 5.50186 5.55140 5.58237 5.60383 5.73290 5.75006 5.81718 5.97372 6.01130 6.09500 6.26995 6.28706 6.72348 6.76966 6.81205 6.93414 7.77010 7.89531 7.94436 8.10041 8.41497 8.83420 9.10726 9.65177 11.17118 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056849 B = 0.002335 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.416306 B =11987.144353 C =12319.898986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.536 6.536 13 N -0.745 5.745 14 C 0.120 3.880 15 C -0.126 4.126 16 C 0.058 3.942 17 N -0.538 5.538 18 C 0.055 3.945 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.050 3.950 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.397 0.603 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 -27.728 -1.136 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.412 6.412 13 N -0.399 5.399 14 C -0.004 4.004 15 C -0.164 4.164 16 C -0.070 4.070 17 N -0.263 5.263 18 C -0.073 4.073 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.077 4.077 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.231 0.769 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.039 -27.531 -0.749 28.691 hybrid contribution 0.314 0.738 -0.705 1.068 sum 8.353 -26.794 -1.454 28.103 Atomic orbital electron populations 1.70001 1.06053 1.26550 1.50256 1.25038 0.94839 0.99246 0.95357 0.86582 0.79763 0.83502 0.78039 1.20693 1.21240 1.19892 1.21234 0.92935 0.91035 1.51285 0.92596 1.18899 0.93203 0.89404 0.98604 1.21860 1.00697 0.91995 1.02453 1.21564 0.88645 0.85698 0.74405 1.90666 1.14529 1.87699 1.48284 1.46185 1.10038 1.05613 1.78045 1.21160 0.94534 0.82709 1.02047 1.21784 0.98523 0.92823 1.03318 1.21997 0.93669 0.89951 1.01364 1.61903 1.26145 1.03062 1.35176 1.22085 0.95459 0.89115 1.00646 1.21586 0.97910 0.97496 0.98488 1.21591 0.99247 0.97388 0.97788 1.21588 0.97690 0.94224 1.02019 1.22169 0.95707 0.99875 0.89980 0.92971 0.95855 0.95828 0.90242 0.90298 0.76943 0.92102 0.91855 0.90373 0.91339 0.94517 0.90310 0.95000 0.90679 0.91641 0.91028 0.91859 0.92396 0.91027 0.91610 0.95008 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 11 C 0.51 10.03 7.83 -10.98 -0.09 9.94 16 12 O -0.54 -13.01 15.98 5.55 0.09 -12.92 16 13 N -0.74 -10.62 5.56 -60.29 -0.33 -10.95 16 14 C 0.12 1.49 5.67 -4.04 -0.02 1.47 16 15 C -0.13 -1.14 5.26 -26.73 -0.14 -1.29 16 16 C 0.06 0.50 4.96 -3.82 -0.02 0.48 16 17 N -0.54 -4.50 4.66 -234.66 -1.09 -5.60 16 18 C 0.05 0.40 5.46 -3.83 -0.02 0.38 16 19 C -0.12 -0.74 6.09 -26.65 -0.16 -0.91 16 20 C -0.12 -0.75 6.00 -26.60 -0.16 -0.91 16 21 C -0.12 -0.78 6.09 -26.65 -0.16 -0.94 16 22 C 0.05 0.39 5.29 -3.84 -0.02 0.37 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 33 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 35 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.60 6.21 -51.93 -0.32 0.28 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -34.04 350.80 -9.95 -43.99 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.13 Total: -2.41 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.48 Total: -7.24 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.69 Total: -43.56 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.04 -9.95 -43.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359846621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.065 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds