Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99987 * 2 1 4 4 H 1.48500 * 109.46790 * 269.99733 * 3 2 1 5 5 H 1.48506 * 109.47228 * 29.99252 * 3 2 1 6 6 H 1.48493 * 109.47450 * 149.99652 * 3 2 1 7 7 C 1.37879 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46742 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46932 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00380 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99813 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46846 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47116 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47166 * 179.97438 * 16 15 14 18 18 C 1.46854 * 110.99665 * 170.00131 * 17 16 15 19 19 C 1.53037 * 109.51886 * 185.84309 * 18 17 16 20 20 C 1.53126 * 109.27801 * 300.81620 * 19 18 17 21 21 C 1.53124 * 109.15878 * 57.65645 * 20 19 18 22 22 C 1.46844 * 111.00090 * 294.20807 * 17 16 15 23 23 H 0.96999 * 119.99869 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47044 * 60.00085 * 9 7 2 25 25 H 1.09003 * 109.46968 * 299.99631 * 9 7 2 26 26 H 1.08995 * 109.47303 * 60.00218 * 10 9 7 27 27 H 1.09003 * 109.47473 * 299.99899 * 10 9 7 28 28 H 0.96994 * 119.99957 * 359.97438 * 13 11 10 29 29 H 1.08995 * 109.47036 * 60.00013 * 14 13 11 30 30 H 1.09004 * 109.47474 * 300.00082 * 14 13 11 31 31 H 1.08995 * 109.47303 * 60.00164 * 15 14 13 32 32 H 1.09003 * 109.47067 * 299.99491 * 15 14 13 33 33 H 1.09004 * 109.46918 * 59.99611 * 16 15 14 34 34 H 1.09003 * 109.46728 * 300.00185 * 16 15 14 35 35 H 1.08994 * 109.46310 * 65.82535 * 18 17 16 36 36 H 1.09004 * 109.45830 * 305.85222 * 18 17 16 37 37 H 1.09000 * 109.50480 * 180.88135 * 19 18 17 38 38 H 1.08992 * 109.50737 * 60.75564 * 19 18 17 39 39 H 1.08998 * 109.52297 * 177.56592 * 20 19 18 40 40 H 1.08999 * 109.51925 * 297.75795 * 20 19 18 41 41 H 1.08999 * 109.50059 * 62.28737 * 21 20 19 42 42 H 1.08993 * 109.49981 * 182.40384 * 21 20 19 43 43 H 1.09002 * 109.46133 * 294.17882 * 22 17 16 44 44 H 1.09002 * 109.46211 * 54.14407 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0003 13 7 2.1659 -6.1343 0.0026 14 6 1.4333 -7.4031 0.0026 15 6 2.4276 -8.5659 0.0050 16 6 1.6627 -9.8910 0.0044 17 7 2.6173 -11.0075 0.0061 18 6 1.9327 -12.2848 0.2435 19 6 2.9691 -13.4021 0.3836 20 6 3.8048 -13.4800 -0.8971 21 6 4.4682 -12.1228 -1.1475 22 6 3.3884 -11.0426 -1.2431 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8877 28 1 3.1358 -6.1343 0.0037 29 1 0.8077 -7.4613 -0.8880 30 1 0.8056 -7.4603 0.8919 31 1 3.0529 -8.5075 0.8959 32 1 3.0556 -8.5090 -0.8841 33 1 1.0376 -9.9492 -0.8868 34 1 1.0344 -9.9483 0.8932 35 1 1.2728 -12.5047 -0.5956 36 1 1.3454 -12.2173 1.1594 37 1 2.4601 -14.3526 0.5443 38 1 3.6208 -13.1899 1.2310 39 1 4.5725 -14.2456 -0.7851 40 1 3.1590 -13.7306 -1.7387 41 1 5.1435 -11.8905 -0.3241 42 1 5.0302 -12.1592 -2.0807 43 1 2.7215 -11.2683 -2.0753 44 1 3.8583 -10.0729 -1.4072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359846621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = -90.763682 kcal Electronic energy + Delta-G solvation = -19832.723362 eV Core-core repulsion = 16782.491057 eV Total energy + Delta-G solvation = -3050.232305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69735 -39.95126 -36.80394 -35.54690 -34.76866 -33.07670 -31.89982 -31.43208 -28.06075 -26.48123 -24.48158 -23.92041 -23.13696 -22.15011 -20.96411 -20.59643 -18.78789 -17.47987 -17.35824 -16.96117 -16.56105 -16.28198 -16.20847 -15.66473 -15.30411 -15.00384 -14.75082 -14.42313 -14.18937 -14.17033 -13.95635 -13.37015 -13.23895 -13.08885 -12.80251 -12.66598 -12.49149 -12.43737 -12.10410 -11.91511 -11.88138 -11.62955 -11.56538 -11.30111 -11.25644 -11.15422 -10.71484 -10.56618 -10.05690 -9.29355 -8.17494 -6.31654 1.42571 1.45566 1.56541 1.72809 2.23913 2.45151 2.94318 3.15300 3.84814 3.88772 3.98972 4.01233 4.08688 4.15925 4.22224 4.35348 4.45563 4.51852 4.53217 4.57247 4.60185 4.67921 4.70996 4.74590 4.85346 4.94389 5.04745 5.08055 5.10430 5.16931 5.22402 5.24967 5.31194 5.47428 5.49301 5.54161 5.64008 5.86202 6.11833 6.16561 6.18250 6.63990 6.87057 7.36592 7.38990 8.95229 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056849 B = 0.002335 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.416306 B =11987.144353 C =12319.898986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.010 4.010 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.509 3.491 12 O -0.592 6.592 13 N -0.718 5.718 14 C 0.120 3.880 15 C -0.109 4.109 16 C 0.060 3.940 17 N -0.544 5.544 18 C 0.052 3.948 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.116 4.116 22 C 0.048 3.952 23 H 0.263 0.737 24 H -0.019 1.019 25 H -0.019 1.019 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.417 0.583 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.027 0.973 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.611 -28.430 -1.198 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.297 3.703 12 O -0.473 6.473 13 N -0.372 5.372 14 C -0.004 4.004 15 C -0.147 4.147 16 C -0.069 4.069 17 N -0.268 5.268 18 C -0.076 4.076 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.080 4.080 23 H 0.071 0.929 24 H 0.000 1.000 25 H 0.000 1.000 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.254 0.746 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.940 -28.288 -0.812 30.341 hybrid contribution -0.590 0.869 -0.688 1.256 sum 10.350 -27.419 -1.500 29.346 Atomic orbital electron populations 1.70185 1.08338 1.27797 1.51515 1.26177 0.95764 1.04059 0.94680 0.85292 0.78650 0.77595 0.78520 1.19687 1.21228 1.17845 1.21730 0.94043 0.91588 1.50701 0.90497 1.18700 0.93768 0.92586 0.94645 1.21637 0.99285 0.90061 1.04924 1.21366 0.87799 0.86914 0.74185 1.90653 1.16829 1.88483 1.51295 1.45890 1.11057 1.04734 1.75489 1.21265 0.95231 0.82750 1.01161 1.21629 0.97568 0.91372 1.04149 1.21948 0.93706 0.89973 1.01257 1.61927 1.26096 1.03264 1.35561 1.22147 0.95786 0.89060 1.00591 1.21577 0.97640 0.97574 0.98442 1.21600 0.99425 0.97403 0.97571 1.21583 0.97317 0.94085 1.02350 1.22225 0.95830 1.00412 0.89516 0.92874 1.00025 1.00011 0.87667 0.87668 0.74570 0.93097 0.92820 0.89704 0.90213 0.94902 0.90312 0.95278 0.90541 0.90529 0.91512 0.90930 0.92459 0.91451 0.90665 0.95470 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.21 13.29 21.45 0.28 -59.92 16 2 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 3 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.12 -4.83 5.64 29.85 0.17 -4.66 16 11 C 0.51 20.02 7.83 87.66 0.69 20.70 16 12 O -0.59 -29.84 15.98 -3.04 -0.05 -29.89 16 13 N -0.72 -19.31 5.56 -463.05 -2.57 -21.89 16 14 C 0.12 2.87 5.67 86.38 0.49 3.36 16 15 C -0.11 -1.76 5.26 30.60 0.16 -1.60 16 16 C 0.06 0.95 4.96 86.31 0.43 1.38 16 17 N -0.54 -8.28 4.66 -896.34 -4.17 -12.46 16 18 C 0.05 0.70 5.46 86.32 0.47 1.17 16 19 C -0.11 -1.28 6.09 30.65 0.19 -1.09 16 20 C -0.12 -1.28 6.00 30.68 0.18 -1.10 16 21 C -0.12 -1.32 6.09 30.65 0.19 -1.14 16 22 C 0.05 0.66 5.29 86.33 0.46 1.11 16 23 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 24 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 25 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 26 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 27 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 28 H 0.42 8.01 8.47 -92.71 -0.79 7.22 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.15 6.43 -2.39 -0.02 1.13 16 33 H 0.03 0.55 8.12 -2.39 -0.02 0.53 16 34 H 0.08 1.26 7.99 -2.39 -0.02 1.24 16 35 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.08 1.00 8.02 -2.39 -0.02 0.98 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.08 1.06 6.21 -2.39 -0.01 1.05 16 Total: -1.00 -76.44 350.80 -0.08 -76.52 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.16 Total: 11.49 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.24 Total: -10.50 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -6.46 Total: -94.27 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.05 Total: -29.89 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -76.44 -0.08 -76.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359846621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.241 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds