Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.54880 * 2 1 4 4 C 1.53000 * 117.49792 * 145.66761 * 2 1 3 5 5 N 1.46502 * 117.50101 * 359.97438 * 4 2 1 6 6 C 1.34771 * 120.00043 * 204.91628 * 5 4 2 7 7 O 1.21591 * 120.00125 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00354 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00677 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47522 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.46917 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47123 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99932 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00372 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99812 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46805 * 90.00128 * 16 14 12 18 18 H 1.48495 * 109.47121 * 209.99927 * 16 14 12 19 19 H 1.48496 * 109.47310 * 330.00221 * 16 14 12 20 20 C 1.53002 * 60.02940 * 107.48056 * 4 2 1 21 21 C 1.52999 * 117.49968 * 107.50530 * 20 4 2 22 22 C 1.53002 * 117.49773 * 252.51785 * 20 4 2 23 23 H 1.08998 * 109.47616 * 325.72414 * 1 2 3 24 24 H 1.08996 * 109.47220 * 85.72699 * 1 2 3 25 25 H 1.09006 * 109.46853 * 205.72235 * 1 2 3 26 26 H 1.09001 * 109.47296 * 154.27477 * 3 2 1 27 27 H 1.09007 * 109.46973 * 274.27963 * 3 2 1 28 28 H 1.09008 * 109.47059 * 34.27345 * 3 2 1 29 29 H 1.09002 * 117.49833 * 214.98161 * 4 2 1 30 30 H 0.97002 * 119.99733 * 24.90626 * 5 4 2 31 31 H 0.97001 * 120.00052 * 359.97438 * 8 6 5 32 32 H 1.08994 * 109.47086 * 300.00815 * 9 8 6 33 33 H 1.09009 * 109.46341 * 60.00014 * 9 8 6 34 34 H 1.08998 * 109.46979 * 300.00307 * 10 9 8 35 35 H 1.08996 * 109.46582 * 60.00453 * 10 9 8 36 36 H 1.08993 * 109.47811 * 300.00604 * 11 10 9 37 37 H 1.09010 * 109.47141 * 60.00712 * 11 10 9 38 38 H 0.96994 * 119.99776 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.47641 * 111.39010 * 21 20 4 40 40 H 1.09000 * 109.46660 * 231.39296 * 21 20 4 41 41 H 1.08997 * 109.47098 * 351.38476 * 21 20 4 42 42 H 1.09005 * 109.47034 * 8.60952 * 22 20 4 43 43 H 1.08996 * 109.47323 * 128.60841 * 22 20 4 44 44 H 1.08997 * 109.47719 * 248.61411 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1207 0.7654 5 7 1.3961 -2.1114 1.4427 6 6 1.8769 -2.7911 2.5025 7 8 3.0082 -2.5826 2.8962 8 7 1.1037 -3.7021 3.1259 9 6 1.6264 -4.4415 4.2776 10 6 0.5554 -5.4040 4.7947 11 6 1.1012 -6.1756 5.9978 12 6 0.0465 -7.1241 6.5067 13 1 -0.9166 -7.1720 6.0204 14 6 0.3110 -7.9307 7.5933 15 7 1.4836 -7.8719 8.1858 16 14 -0.9961 -9.1069 8.2237 17 1 -0.8594 -10.4147 7.5336 18 1 -0.8255 -9.2987 9.6862 19 1 -2.3425 -8.5423 7.9522 20 6 2.2367 -1.1221 -0.7646 21 6 3.5495 -0.7781 -1.4711 22 6 1.3589 -2.1577 -1.4703 23 1 -0.3634 0.8492 0.5787 24 1 -0.3633 0.0766 -1.0248 25 1 -0.3633 -0.9259 0.4460 26 1 3.1819 1.3089 0.4461 27 1 2.2774 1.7412 -1.0249 28 1 1.5803 2.0744 0.5788 29 1 3.1715 -0.8747 1.2687 30 1 0.4937 -2.2779 1.1285 31 1 0.2010 -3.8683 2.8121 32 1 2.5085 -5.0065 3.9767 33 1 1.8961 -3.7402 5.0674 34 1 -0.3264 -4.8385 5.0958 35 1 0.2853 -6.1051 4.0051 36 1 1.9832 -6.7410 5.6972 37 1 1.3709 -5.4741 6.7874 38 1 1.6696 -8.4391 8.9504 39 1 3.9369 -1.6661 -1.9705 40 1 3.3709 0.0046 -2.2084 41 1 4.2757 -0.4276 -0.7379 42 1 0.7296 -2.6611 -0.7363 43 1 0.7297 -1.6589 -2.2074 44 1 1.9921 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360677191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = -32.794808 kcal Electronic energy + Delta-G solvation = -20332.719217 eV Core-core repulsion = 17285.000631 eV Total energy + Delta-G solvation = -3047.718586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51125 -38.91180 -35.36798 -33.64542 -33.10724 -31.46609 -31.01387 -28.92494 -27.47793 -26.57622 -26.26211 -23.15404 -21.05414 -20.54639 -20.17416 -18.15198 -18.05181 -16.62231 -16.12605 -15.43584 -15.14937 -14.74055 -14.58802 -14.39075 -14.18460 -13.65986 -13.55539 -12.94359 -12.84184 -12.77693 -12.56102 -12.32043 -12.26889 -12.11426 -11.84459 -11.77655 -11.75439 -11.11429 -10.91948 -10.73194 -10.71311 -10.58628 -10.10056 -9.84834 -9.65975 -9.42639 -9.11604 -8.90219 -8.45169 -8.36392 -6.01046 -4.04102 2.72531 3.15124 3.31178 3.37524 3.40301 3.63018 4.23016 4.40348 4.45251 4.45544 4.51846 4.76572 4.83640 5.17714 5.27900 5.34710 5.40913 5.46064 5.52793 5.57503 5.59607 5.65350 5.66967 5.73269 5.74151 5.77554 5.82888 5.91199 5.99047 6.12350 6.19968 6.49954 6.54356 6.63650 6.81648 7.03271 7.08452 7.64857 7.77850 7.98012 8.14243 8.38901 8.75652 9.02637 9.59959 11.10311 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041192 B = 0.002737 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.581699 B =10225.873487 C =10368.348266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.135 4.135 3 C -0.112 4.112 4 C 0.122 3.878 5 N -0.720 5.720 6 C 0.703 3.297 7 O -0.591 6.591 8 N -0.741 5.741 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.113 4.113 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.394 0.606 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 16.611 -20.680 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.137 4.137 3 C -0.169 4.169 4 C 0.014 3.986 5 N -0.375 5.375 6 C 0.403 3.597 7 O -0.469 6.469 8 N -0.395 5.395 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.140 4.140 21 C -0.168 4.168 22 C -0.170 4.170 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.154 0.846 30 H 0.231 0.769 31 H 0.226 0.774 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.461 16.677 -20.091 26.115 hybrid contribution -1.579 -0.902 0.118 1.822 sum -2.040 15.775 -19.973 25.534 Atomic orbital electron populations 1.21265 0.92181 1.01864 1.01791 1.22229 0.95134 0.91854 1.04436 1.21304 1.00239 0.93589 1.01761 1.21870 0.96074 0.90909 0.89734 1.44605 1.17447 1.42702 1.32716 1.15959 0.84729 0.79334 0.79639 1.90911 1.18339 1.69751 1.67856 1.45382 1.17270 1.42209 1.34646 1.21522 0.97872 0.93831 0.85576 1.21888 0.96857 0.96841 1.00231 1.19026 0.96560 0.94592 0.91194 1.21207 0.99800 1.21324 1.13727 0.92669 1.25033 0.95479 0.97284 0.96686 1.69965 1.21573 1.39681 1.22053 0.86581 0.81981 0.81324 0.78022 1.20665 1.21204 1.19912 1.22282 0.98247 0.99161 0.94336 1.21290 0.94260 1.01404 0.99894 1.21242 0.98869 0.97190 0.99682 0.91882 0.92043 0.92773 0.92149 0.92093 0.92136 0.84575 0.76949 0.77395 0.91911 0.91915 0.92776 0.92783 0.96241 0.96224 0.92920 0.92148 0.92212 0.92201 0.92632 0.92272 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 8.82 37.16 0.33 -0.48 16 2 C -0.13 -1.12 2.70 -154.47 -0.42 -1.53 16 3 C -0.11 -0.80 8.88 37.15 0.33 -0.47 16 4 C 0.12 1.33 5.67 -67.93 -0.39 0.94 16 5 N -0.72 -8.35 4.62 -58.67 -0.27 -8.62 16 6 C 0.70 11.10 8.57 -86.93 -0.74 10.35 16 7 O -0.59 -11.86 15.91 5.29 0.08 -11.78 16 8 N -0.74 -11.00 5.56 -65.23 -0.36 -11.37 16 9 C 0.14 2.45 5.67 -4.04 -0.02 2.42 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 12 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.14 -1.19 2.70 -154.47 -0.42 -1.61 16 21 C -0.11 -0.86 8.88 37.16 0.33 -0.53 16 22 C -0.11 -0.88 8.82 37.16 0.33 -0.55 16 23 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 24 H 0.06 0.38 8.02 -51.93 -0.42 -0.03 16 25 H 0.05 0.38 5.62 -51.93 -0.29 0.09 16 26 H 0.06 0.45 7.78 -51.93 -0.40 0.04 16 27 H 0.06 0.38 8.03 -51.92 -0.42 -0.04 16 28 H 0.06 0.41 7.92 -51.92 -0.41 0.00 16 29 H 0.14 1.76 7.21 -51.93 -0.37 1.38 16 30 H 0.39 3.56 5.43 -40.82 -0.22 3.34 16 31 H 0.39 4.64 8.49 -40.82 -0.35 4.29 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 40 H 0.06 0.39 8.03 -51.93 -0.42 -0.03 16 41 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 42 H 0.05 0.44 5.98 -51.93 -0.31 0.13 16 43 H 0.06 0.40 8.02 -51.93 -0.42 -0.02 16 44 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -32.70 352.75 -8.62 -41.33 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.74 Total: 1.76 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.36 Total: -6.94 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.10 Total: -46.22 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.70 -8.62 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360677191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.531 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds