Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.54880 * 2 1 4 4 C 1.53000 * 117.49792 * 145.66761 * 2 1 3 5 5 N 1.46502 * 117.50101 * 359.97438 * 4 2 1 6 6 C 1.34771 * 120.00043 * 204.91628 * 5 4 2 7 7 O 1.21591 * 120.00125 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00354 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00677 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47522 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.46917 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47123 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99932 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00372 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99812 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46805 * 90.00128 * 16 14 12 18 18 H 1.48495 * 109.47121 * 209.99927 * 16 14 12 19 19 H 1.48496 * 109.47310 * 330.00221 * 16 14 12 20 20 C 1.53002 * 60.02940 * 107.48056 * 4 2 1 21 21 C 1.52999 * 117.49968 * 107.50530 * 20 4 2 22 22 C 1.53002 * 117.49773 * 252.51785 * 20 4 2 23 23 H 1.08998 * 109.47616 * 325.72414 * 1 2 3 24 24 H 1.08996 * 109.47220 * 85.72699 * 1 2 3 25 25 H 1.09006 * 109.46853 * 205.72235 * 1 2 3 26 26 H 1.09001 * 109.47296 * 154.27477 * 3 2 1 27 27 H 1.09007 * 109.46973 * 274.27963 * 3 2 1 28 28 H 1.09008 * 109.47059 * 34.27345 * 3 2 1 29 29 H 1.09002 * 117.49833 * 214.98161 * 4 2 1 30 30 H 0.97002 * 119.99733 * 24.90626 * 5 4 2 31 31 H 0.97001 * 120.00052 * 359.97438 * 8 6 5 32 32 H 1.08994 * 109.47086 * 300.00815 * 9 8 6 33 33 H 1.09009 * 109.46341 * 60.00014 * 9 8 6 34 34 H 1.08998 * 109.46979 * 300.00307 * 10 9 8 35 35 H 1.08996 * 109.46582 * 60.00453 * 10 9 8 36 36 H 1.08993 * 109.47811 * 300.00604 * 11 10 9 37 37 H 1.09010 * 109.47141 * 60.00712 * 11 10 9 38 38 H 0.96994 * 119.99776 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.47641 * 111.39010 * 21 20 4 40 40 H 1.09000 * 109.46660 * 231.39296 * 21 20 4 41 41 H 1.08997 * 109.47098 * 351.38476 * 21 20 4 42 42 H 1.09005 * 109.47034 * 8.60952 * 22 20 4 43 43 H 1.08996 * 109.47323 * 128.60841 * 22 20 4 44 44 H 1.08997 * 109.47719 * 248.61411 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1207 0.7654 5 7 1.3961 -2.1114 1.4427 6 6 1.8769 -2.7911 2.5025 7 8 3.0082 -2.5826 2.8962 8 7 1.1037 -3.7021 3.1259 9 6 1.6264 -4.4415 4.2776 10 6 0.5554 -5.4040 4.7947 11 6 1.1012 -6.1756 5.9978 12 6 0.0465 -7.1241 6.5067 13 1 -0.9166 -7.1720 6.0204 14 6 0.3110 -7.9307 7.5933 15 7 1.4836 -7.8719 8.1858 16 14 -0.9961 -9.1069 8.2237 17 1 -0.8594 -10.4147 7.5336 18 1 -0.8255 -9.2987 9.6862 19 1 -2.3425 -8.5423 7.9522 20 6 2.2367 -1.1221 -0.7646 21 6 3.5495 -0.7781 -1.4711 22 6 1.3589 -2.1577 -1.4703 23 1 -0.3634 0.8492 0.5787 24 1 -0.3633 0.0766 -1.0248 25 1 -0.3633 -0.9259 0.4460 26 1 3.1819 1.3089 0.4461 27 1 2.2774 1.7412 -1.0249 28 1 1.5803 2.0744 0.5788 29 1 3.1715 -0.8747 1.2687 30 1 0.4937 -2.2779 1.1285 31 1 0.2010 -3.8683 2.8121 32 1 2.5085 -5.0065 3.9767 33 1 1.8961 -3.7402 5.0674 34 1 -0.3264 -4.8385 5.0958 35 1 0.2853 -6.1051 4.0051 36 1 1.9832 -6.7410 5.6972 37 1 1.3709 -5.4741 6.7874 38 1 1.6696 -8.4391 8.9504 39 1 3.9369 -1.6661 -1.9705 40 1 3.3709 0.0046 -2.2084 41 1 4.2757 -0.4276 -0.7379 42 1 0.7296 -2.6611 -0.7363 43 1 0.7297 -1.6589 -2.2074 44 1 1.9921 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360677191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = -53.453837 kcal Electronic energy + Delta-G solvation = -20333.615059 eV Core-core repulsion = 17285.000631 eV Total energy + Delta-G solvation = -3048.614428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49402 -39.96069 -36.96283 -35.21911 -34.59316 -32.77730 -32.07733 -29.53354 -28.81934 -27.58785 -27.15622 -24.96252 -22.33921 -22.18255 -21.14334 -19.36402 -18.70826 -18.51944 -17.40693 -16.80885 -16.52494 -16.01156 -15.69375 -15.59149 -15.47767 -14.75180 -14.38500 -14.24727 -13.76003 -13.62106 -13.55040 -13.41085 -13.38581 -13.14024 -12.95217 -12.75372 -12.67682 -12.54535 -12.45966 -12.36289 -11.74255 -11.70392 -11.66326 -11.61453 -11.32625 -11.16210 -10.55096 -10.33599 -10.20887 -9.41844 -8.19132 -6.30707 1.41906 1.43508 1.54251 1.60399 2.01836 2.42276 2.79674 3.14667 3.18786 3.64842 3.76207 3.79732 4.15588 4.16209 4.18974 4.23077 4.55872 4.56641 4.66828 4.75110 4.86624 4.91377 4.95615 4.95652 4.96302 5.01107 5.03009 5.08305 5.16877 5.17145 5.19416 5.28271 5.40003 5.45265 5.52138 5.53423 5.56584 5.71367 5.84663 5.97620 6.22899 6.86682 7.05931 7.38873 7.54383 8.93168 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041192 B = 0.002737 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.581699 B =10225.873487 C =10368.348266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.086 3.914 5 N -0.699 5.699 6 C 0.700 3.300 7 O -0.639 6.639 8 N -0.729 5.729 9 C 0.150 3.850 10 C -0.100 4.100 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.260 1.260 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.114 4.114 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.409 0.591 31 H 0.411 0.589 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.068 0.932 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 17.033 -22.611 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.118 4.118 3 C -0.171 4.171 4 C -0.021 4.021 5 N -0.355 5.355 6 C 0.400 3.600 7 O -0.521 6.521 8 N -0.384 5.384 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.014 4.014 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.184 1.184 20 C -0.131 4.131 21 C -0.170 4.170 22 C -0.171 4.171 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.249 0.751 31 H 0.248 0.752 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.021 17.123 -22.085 28.108 hybrid contribution -0.749 -0.969 0.673 1.397 sum -3.770 16.153 -21.412 27.085 Atomic orbital electron populations 1.21327 0.90887 1.02124 1.02933 1.22335 0.96010 0.91639 1.01831 1.21354 0.99850 0.93093 1.02801 1.21945 0.96031 0.92952 0.91189 1.44368 1.18072 1.41797 1.31219 1.16111 0.84103 0.79468 0.80304 1.90881 1.20574 1.71212 1.69404 1.45008 1.18026 1.41727 1.33682 1.21087 0.96906 0.93236 0.86240 1.21584 0.97185 0.96829 0.98158 1.18940 0.95529 0.94165 0.92786 1.21684 1.00615 1.21597 1.13961 0.91467 1.26040 0.97807 0.99301 0.97030 1.70115 1.23902 1.40895 1.22706 0.85402 0.79318 0.78857 0.77190 1.19808 1.21064 1.18368 1.22385 0.98878 0.99427 0.92375 1.21328 0.93698 1.01982 1.00001 1.21284 0.98863 0.96983 0.99942 0.91488 0.90451 0.92661 0.92938 0.90503 0.91600 0.87382 0.75145 0.75225 0.93542 0.93539 0.91305 0.91293 0.98976 0.98956 0.92808 0.92145 0.90460 0.92977 0.92695 0.90489 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.82 71.98 0.63 -0.68 16 2 C -0.12 -1.72 2.70 -52.16 -0.14 -1.86 16 3 C -0.11 -1.45 8.88 71.98 0.64 -0.81 16 4 C 0.09 1.84 5.67 44.99 0.26 2.10 16 5 N -0.70 -15.68 4.62 -457.81 -2.11 -17.79 16 6 C 0.70 22.15 8.57 179.06 1.53 23.69 16 7 O -0.64 -26.63 15.91 -4.00 -0.06 -26.69 16 8 N -0.73 -21.13 5.56 -478.54 -2.66 -23.79 16 9 C 0.15 5.51 5.67 86.38 0.49 6.00 16 10 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 11 C 0.02 1.24 4.97 29.85 0.15 1.39 16 12 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 13 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 14 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 15 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 16 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 20 C -0.13 -2.03 2.70 -52.16 -0.14 -2.17 16 21 C -0.11 -1.60 8.88 71.98 0.64 -0.96 16 22 C -0.11 -1.51 8.82 71.98 0.63 -0.87 16 23 H 0.07 0.74 7.92 -2.39 -0.02 0.72 16 24 H 0.08 0.68 8.02 -2.39 -0.02 0.66 16 25 H 0.05 0.62 5.62 -2.38 -0.01 0.60 16 26 H 0.05 0.76 7.78 -2.39 -0.02 0.74 16 27 H 0.08 0.76 8.03 -2.38 -0.02 0.74 16 28 H 0.06 0.78 7.92 -2.38 -0.02 0.76 16 29 H 0.11 2.96 7.21 -2.39 -0.02 2.94 16 30 H 0.41 6.60 5.43 -92.71 -0.50 6.10 16 31 H 0.41 8.86 8.49 -92.71 -0.79 8.07 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.06 0.85 7.92 -2.39 -0.02 0.83 16 40 H 0.08 0.83 8.03 -2.39 -0.02 0.81 16 41 H 0.05 0.82 7.78 -2.39 -0.02 0.80 16 42 H 0.05 0.73 5.98 -2.38 -0.01 0.71 16 43 H 0.08 0.77 8.02 -2.39 -0.02 0.75 16 44 H 0.06 0.83 7.92 -2.39 -0.02 0.81 16 Total: -1.00 -72.15 352.75 2.71 -69.44 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.31 Total: 17.97 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.55 Total: -7.75 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -4.49 Total: -98.91 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -72.15 2.71 -69.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360677191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.989 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds