Wall clock time and date at job start Mon Mar 30 2020 01:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46791 * 239.99243 * 3 2 1 5 5 H 1.48493 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47024 * 119.99785 * 3 2 1 7 7 C 1.37878 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47217 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.46854 * 110.99958 * 45.78975 * 11 10 9 13 13 C 1.53039 * 109.52227 * 185.83752 * 12 11 10 14 14 C 1.53126 * 109.28009 * 300.82107 * 13 12 11 15 15 C 1.53099 * 109.15071 * 57.65227 * 14 13 12 16 16 H 1.09009 * 109.50682 * 62.29317 * 15 14 13 17 17 N 1.46903 * 109.48797 * 182.39910 * 15 14 13 18 18 C 1.47007 * 110.99849 * 58.44228 * 17 15 14 19 19 C 1.53100 * 109.25787 * 177.60595 * 18 17 15 20 20 O 1.43016 * 109.25665 * 56.85675 * 19 18 17 21 21 C 1.43023 * 113.73620 * 301.32830 * 20 19 18 22 22 C 1.47020 * 111.00023 * 294.81168 * 17 15 14 23 23 C 1.46847 * 110.99897 * 169.99837 * 11 10 9 24 24 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46781 * 60.00014 * 9 7 2 26 26 H 1.08994 * 109.47303 * 300.00535 * 9 7 2 27 27 H 1.08992 * 109.47192 * 60.00187 * 10 9 7 28 28 H 1.09001 * 109.46718 * 300.00253 * 10 9 7 29 29 H 1.08993 * 109.46229 * 305.85774 * 12 11 10 30 30 H 1.09008 * 109.45822 * 65.82829 * 12 11 10 31 31 H 1.08994 * 109.50227 * 60.75933 * 13 12 11 32 32 H 1.09000 * 109.50337 * 180.88158 * 13 12 11 33 33 H 1.08990 * 109.52264 * 177.55890 * 14 13 12 34 34 H 1.09002 * 109.52383 * 297.68676 * 14 13 12 35 35 H 1.08997 * 109.51027 * 297.54528 * 18 17 15 36 36 H 1.09004 * 109.50432 * 57.67824 * 18 17 15 37 37 H 1.08998 * 109.51135 * 296.92140 * 19 18 17 38 38 H 1.09002 * 109.50736 * 176.78366 * 19 18 17 39 39 H 1.09002 * 109.50237 * 298.73564 * 21 20 19 40 40 H 1.08998 * 109.50681 * 178.60582 * 21 20 19 41 41 H 1.09002 * 109.50728 * 302.32909 * 22 17 15 42 42 H 1.09004 * 109.50373 * 62.41179 * 22 17 15 43 43 H 1.09002 * 109.46481 * 294.17890 * 23 11 10 44 44 H 1.08994 * 109.46283 * 54.15743 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9343 -0.0001 12 6 0.4202 -4.9118 -0.9832 13 6 -0.4102 -6.1909 -0.8552 14 6 0.4918 -7.4052 -1.0934 15 6 1.6461 -7.3784 -0.0881 16 1 1.2489 -7.4535 0.9243 17 7 2.5479 -8.5087 -0.3470 18 6 3.0759 -8.4581 -1.7181 19 6 4.0545 -9.6171 -1.9255 20 8 3.3890 -10.8519 -1.6470 21 6 2.8626 -10.9357 -0.3198 22 6 1.8721 -9.7901 -0.0961 23 6 2.4171 -6.0650 -0.2382 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6044 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 -0.2160 -4.0459 -0.8000 30 1 0.8382 -4.8492 -1.9880 31 1 -0.8396 -6.2474 0.1450 32 1 -1.2102 -6.1810 -1.5954 33 1 -0.0859 -8.3197 -0.9606 34 1 0.8899 -7.3699 -2.1076 35 1 2.2536 -8.5445 -2.4282 36 1 3.5942 -7.5118 -1.8737 37 1 4.9037 -9.5014 -1.2521 38 1 4.4049 -9.6173 -2.9576 39 1 3.6773 -10.8584 0.4003 40 1 2.3512 -11.8896 -0.1907 41 1 1.5115 -9.8162 0.9322 42 1 1.0300 -9.8974 -0.7799 43 1 2.8257 -5.9969 -1.2464 44 1 3.2311 -6.0368 0.4861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382472844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:17 Heat of formation + Delta-G solvation = -39.670231 kcal Electronic energy + Delta-G solvation = -21442.084565 eV Core-core repulsion = 18394.067839 eV Total energy + Delta-G solvation = -3048.016726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26711 -38.42429 -35.89368 -33.48275 -32.27751 -31.45196 -30.22743 -28.96056 -26.34393 -25.22394 -24.24712 -23.00797 -22.36189 -21.05167 -19.66164 -19.01214 -16.87027 -16.43016 -16.34069 -15.38591 -15.26734 -15.10365 -14.68103 -14.49655 -14.40463 -14.26544 -13.88199 -13.24830 -13.03230 -12.65837 -12.43985 -12.15150 -12.01597 -11.80845 -11.58071 -11.23080 -11.04931 -10.88961 -10.84476 -10.65040 -10.55891 -10.33860 -10.20349 -9.91676 -9.84481 -9.31343 -9.08953 -8.40842 -8.34727 -7.68852 -6.01428 -4.03783 3.32759 3.37098 3.39475 3.52604 3.70137 4.40542 4.54378 4.69687 4.76150 4.84504 4.93577 4.95397 5.04929 5.11084 5.17782 5.32315 5.34604 5.39965 5.45712 5.51786 5.59801 5.65852 5.74626 5.82293 5.87047 5.93540 6.01501 6.11792 6.15520 6.31851 6.41120 6.53249 6.60038 6.82944 6.88833 6.92424 6.94245 7.50591 7.61334 7.78628 7.84553 8.03700 8.41693 9.02611 9.59942 11.09916 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.003553 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.880669 B = 7879.216969 C = 8268.747316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.065 3.935 11 N -0.538 5.538 12 C 0.049 3.951 13 C -0.112 4.112 14 C -0.151 4.151 15 C 0.090 3.910 16 H 0.092 0.908 17 N -0.530 5.530 18 C 0.009 3.991 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.064 3.936 22 C 0.017 3.983 23 C 0.066 3.934 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.095 0.905 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.027 0.973 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -20.324 -2.381 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.062 4.062 11 N -0.263 5.263 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.190 4.190 15 C -0.018 4.018 16 H 0.110 0.890 17 N -0.254 5.254 18 C -0.119 4.119 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.112 4.112 23 C -0.063 4.063 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.114 0.886 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.480 -20.380 -1.720 20.746 hybrid contribution 0.116 1.284 -1.190 1.754 sum 3.596 -19.096 -2.910 19.648 Atomic orbital electron populations 1.69953 1.06025 1.26740 1.50607 1.24990 0.94846 0.99198 0.95253 0.86645 0.79573 0.83081 0.78621 1.20306 1.21274 1.20177 1.21151 0.92992 0.91016 1.50973 0.92792 1.19241 0.94100 0.90472 0.97764 1.22299 0.96982 0.87910 0.98999 1.61957 1.11607 1.03440 1.49287 1.22212 0.94173 0.98460 0.92991 1.21541 0.97426 0.93900 1.02154 1.22248 0.98061 0.98833 0.99887 1.21759 0.90726 0.89715 0.99643 0.88982 1.62401 1.36514 1.02121 1.24362 1.22889 0.98743 1.00229 0.90011 1.22679 0.94219 0.82939 1.01440 1.87967 1.74631 1.36892 1.31217 1.22661 0.96328 0.97905 0.84391 1.22775 0.96369 0.89899 1.02132 1.22023 0.95083 0.89784 0.99412 0.92919 0.96188 0.95653 0.91849 0.96324 0.88641 0.95778 0.91153 0.91932 0.92307 0.92210 0.93546 0.89254 0.92277 0.88639 0.92304 0.88664 0.89625 0.93687 0.95536 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.55 4.22 -27.88 -0.12 0.43 16 10 C 0.06 1.38 5.21 -3.83 -0.02 1.36 16 11 N -0.54 -9.80 4.81 -234.67 -1.13 -10.93 16 12 C 0.05 0.86 4.85 -3.83 -0.02 0.84 16 13 C -0.11 -1.56 6.09 -26.65 -0.16 -1.73 16 14 C -0.15 -1.88 4.58 -26.62 -0.12 -2.00 16 15 C 0.09 1.16 2.39 -67.64 -0.16 1.00 16 16 H 0.09 1.25 8.12 -51.92 -0.42 0.83 16 17 N -0.53 -6.09 4.72 -226.24 -1.07 -7.15 16 18 C 0.01 0.10 4.86 -3.71 -0.02 0.08 16 19 C 0.06 0.63 7.01 37.21 0.26 0.89 16 20 O -0.39 -4.30 10.83 -35.23 -0.38 -4.68 16 21 C 0.06 0.58 7.01 37.20 0.26 0.84 16 22 C 0.02 0.16 5.31 -3.71 -0.02 0.14 16 23 C 0.07 1.00 4.54 -3.84 -0.02 0.98 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.54 6.21 -51.93 -0.32 0.21 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.10 1.91 5.81 -51.93 -0.30 1.60 16 30 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.67 6.71 -51.93 -0.35 0.32 16 34 H 0.06 0.76 6.32 -51.93 -0.33 0.44 16 35 H 0.05 0.53 6.37 -51.93 -0.33 0.20 16 36 H 0.09 0.99 6.20 -51.93 -0.32 0.67 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.76 8.13 -51.93 -0.42 0.34 16 42 H 0.04 0.46 6.62 -51.93 -0.34 0.12 16 43 H 0.03 0.41 6.34 -51.93 -0.33 0.08 16 44 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -29.95 327.50 -10.13 -40.08 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.66 Total: -2.17 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.55 Total: -10.68 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -1.46 Total: -44.09 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.38 Total: -4.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.95 -10.13 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382472844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.410 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds