Wall clock time and date at job start Mon Mar 30 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46791 * 239.99243 * 3 2 1 5 5 H 1.48493 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47024 * 119.99785 * 3 2 1 7 7 C 1.37878 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47217 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.46854 * 110.99958 * 45.78975 * 11 10 9 13 13 C 1.53039 * 109.52227 * 185.83752 * 12 11 10 14 14 C 1.53126 * 109.28009 * 300.82107 * 13 12 11 15 15 C 1.53099 * 109.15071 * 57.65227 * 14 13 12 16 16 H 1.09009 * 109.50682 * 62.29317 * 15 14 13 17 17 N 1.46903 * 109.48797 * 182.39910 * 15 14 13 18 18 C 1.47007 * 110.99849 * 58.44228 * 17 15 14 19 19 C 1.53100 * 109.25787 * 177.60595 * 18 17 15 20 20 O 1.43016 * 109.25665 * 56.85675 * 19 18 17 21 21 C 1.43023 * 113.73620 * 301.32830 * 20 19 18 22 22 C 1.47020 * 111.00023 * 294.81168 * 17 15 14 23 23 C 1.46847 * 110.99897 * 169.99837 * 11 10 9 24 24 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46781 * 60.00014 * 9 7 2 26 26 H 1.08994 * 109.47303 * 300.00535 * 9 7 2 27 27 H 1.08992 * 109.47192 * 60.00187 * 10 9 7 28 28 H 1.09001 * 109.46718 * 300.00253 * 10 9 7 29 29 H 1.08993 * 109.46229 * 305.85774 * 12 11 10 30 30 H 1.09008 * 109.45822 * 65.82829 * 12 11 10 31 31 H 1.08994 * 109.50227 * 60.75933 * 13 12 11 32 32 H 1.09000 * 109.50337 * 180.88158 * 13 12 11 33 33 H 1.08990 * 109.52264 * 177.55890 * 14 13 12 34 34 H 1.09002 * 109.52383 * 297.68676 * 14 13 12 35 35 H 1.08997 * 109.51027 * 297.54528 * 18 17 15 36 36 H 1.09004 * 109.50432 * 57.67824 * 18 17 15 37 37 H 1.08998 * 109.51135 * 296.92140 * 19 18 17 38 38 H 1.09002 * 109.50736 * 176.78366 * 19 18 17 39 39 H 1.09002 * 109.50237 * 298.73564 * 21 20 19 40 40 H 1.08998 * 109.50681 * 178.60582 * 21 20 19 41 41 H 1.09002 * 109.50728 * 302.32909 * 22 17 15 42 42 H 1.09004 * 109.50373 * 62.41179 * 22 17 15 43 43 H 1.09002 * 109.46481 * 294.17890 * 23 11 10 44 44 H 1.08994 * 109.46283 * 54.15743 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9343 -0.0001 12 6 0.4202 -4.9118 -0.9832 13 6 -0.4102 -6.1909 -0.8552 14 6 0.4918 -7.4052 -1.0934 15 6 1.6461 -7.3784 -0.0881 16 1 1.2489 -7.4535 0.9243 17 7 2.5479 -8.5087 -0.3470 18 6 3.0759 -8.4581 -1.7181 19 6 4.0545 -9.6171 -1.9255 20 8 3.3890 -10.8519 -1.6470 21 6 2.8626 -10.9357 -0.3198 22 6 1.8721 -9.7901 -0.0961 23 6 2.4171 -6.0650 -0.2382 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6044 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 -0.2160 -4.0459 -0.8000 30 1 0.8382 -4.8492 -1.9880 31 1 -0.8396 -6.2474 0.1450 32 1 -1.2102 -6.1810 -1.5954 33 1 -0.0859 -8.3197 -0.9606 34 1 0.8899 -7.3699 -2.1076 35 1 2.2536 -8.5445 -2.4282 36 1 3.5942 -7.5118 -1.8737 37 1 4.9037 -9.5014 -1.2521 38 1 4.4049 -9.6173 -2.9576 39 1 3.6773 -10.8584 0.4003 40 1 2.3512 -11.8896 -0.1907 41 1 1.5115 -9.8162 0.9322 42 1 1.0300 -9.8974 -0.7799 43 1 2.8257 -5.9969 -1.2464 44 1 3.2311 -6.0368 0.4861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382472844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:16 Heat of formation + Delta-G solvation = -60.919331 kcal Electronic energy + Delta-G solvation = -21443.005996 eV Core-core repulsion = 18394.067839 eV Total energy + Delta-G solvation = -3048.938157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24506 -39.55382 -37.07462 -35.28268 -33.83991 -32.25721 -31.57944 -30.53231 -27.32263 -26.95787 -25.17232 -24.54462 -23.59075 -22.18133 -21.18580 -20.08858 -18.65864 -17.66702 -17.16951 -16.60057 -16.54556 -16.18726 -16.06078 -15.82800 -15.56056 -15.30590 -15.19732 -14.63795 -14.42652 -14.14029 -13.85094 -13.41178 -13.17407 -13.11479 -12.84086 -12.67431 -12.48790 -12.42440 -12.24193 -11.90470 -11.88298 -11.63860 -11.54967 -11.40896 -11.22814 -11.03474 -10.64654 -10.54165 -9.33345 -9.17132 -8.21199 -6.32514 1.39721 1.42817 1.50755 2.38882 2.58625 2.95676 3.12114 3.21639 3.73624 3.79068 3.94796 3.96514 4.06687 4.08648 4.22625 4.28874 4.32325 4.38041 4.45090 4.55834 4.57578 4.62759 4.64073 4.72268 4.77368 4.83660 4.92273 4.94417 4.96603 5.01833 5.04021 5.07636 5.16335 5.33928 5.43589 5.64529 5.76190 5.92523 5.98193 6.07542 6.19081 6.29784 6.32915 6.83570 7.36459 8.90510 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.003553 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.880669 B = 7879.216969 C = 8268.747316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.080 3.920 11 N -0.544 5.544 12 C 0.052 3.948 13 C -0.104 4.104 14 C -0.142 4.142 15 C 0.099 3.901 16 H 0.088 0.912 17 N -0.534 5.534 18 C 0.010 3.990 19 C 0.066 3.934 20 O -0.404 6.404 21 C 0.063 3.937 22 C 0.017 3.983 23 C 0.069 3.931 24 H 0.264 0.736 25 H 0.001 0.999 26 H -0.006 1.006 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.028 0.972 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -21.517 -2.557 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.048 4.048 11 N -0.269 5.269 12 C -0.076 4.076 13 C -0.143 4.143 14 C -0.181 4.181 15 C -0.010 4.010 16 H 0.107 0.893 17 N -0.259 5.259 18 C -0.118 4.118 19 C -0.011 4.011 20 O -0.323 6.323 21 C -0.014 4.014 22 C -0.111 4.111 23 C -0.059 4.059 24 H 0.073 0.927 25 H 0.019 0.981 26 H 0.012 0.988 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.412 -21.601 -1.896 22.128 hybrid contribution -0.192 1.614 -1.130 1.980 sum 4.220 -19.987 -3.026 20.650 Atomic orbital electron populations 1.70090 1.07759 1.27882 1.51298 1.25947 0.95768 1.03270 0.94562 0.85493 0.78280 0.78035 0.79191 1.19214 1.20753 1.19132 1.21599 0.93527 0.92325 1.51129 0.92268 1.19048 0.94239 0.91982 0.95291 1.21963 0.95765 0.88112 0.98916 1.61912 1.12080 1.02990 1.49906 1.22146 0.93836 0.99216 0.92415 1.21482 0.97493 0.92649 1.02629 1.22173 0.97648 0.98631 0.99650 1.21575 0.90701 0.89074 0.99621 0.89343 1.62383 1.36323 1.02355 1.24817 1.22894 0.98816 1.00552 0.89514 1.22736 0.93768 0.82112 1.02486 1.87951 1.74817 1.37301 1.32247 1.22804 0.96342 0.98550 0.83662 1.22854 0.96438 0.89088 1.02746 1.22042 0.94786 0.89726 0.99386 0.92710 0.98067 0.98771 0.91816 0.96394 0.92041 0.96250 0.91289 0.90425 0.90395 0.92274 0.93977 0.89818 0.92074 0.87142 0.92084 0.86578 0.88552 0.93797 0.95386 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.70 4.22 29.85 0.13 1.83 16 10 C 0.08 3.47 5.21 86.30 0.45 3.92 16 11 N -0.54 -20.04 4.81 -896.37 -4.31 -24.35 16 12 C 0.05 1.85 4.85 86.32 0.42 2.27 16 13 C -0.10 -2.83 6.09 30.65 0.19 -2.64 16 14 C -0.14 -3.27 4.58 30.67 0.14 -3.13 16 15 C 0.10 2.40 2.39 44.96 0.11 2.51 16 16 H 0.09 2.25 8.12 -2.38 -0.02 2.23 16 17 N -0.53 -11.25 4.72 -869.70 -4.10 -15.35 16 18 C 0.01 0.21 4.86 86.32 0.42 0.63 16 19 C 0.07 1.15 7.01 72.02 0.50 1.66 16 20 O -0.40 -8.04 10.83 -148.98 -1.61 -9.66 16 21 C 0.06 0.98 7.01 72.01 0.50 1.49 16 22 C 0.02 0.28 5.31 86.31 0.46 0.74 16 23 C 0.07 2.04 4.54 86.32 0.39 2.43 16 24 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.00 0.06 6.21 -2.38 -0.01 0.05 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 29 H 0.06 2.60 5.81 -2.39 -0.01 2.58 16 30 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.55 6.71 -2.39 -0.02 1.53 16 34 H 0.06 1.40 6.32 -2.39 -0.02 1.38 16 35 H 0.04 0.88 6.37 -2.39 -0.02 0.87 16 36 H 0.08 1.76 6.20 -2.38 -0.01 1.74 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.45 8.13 -2.39 -0.02 1.43 16 42 H 0.04 0.78 6.62 -2.38 -0.02 0.76 16 43 H 0.03 0.83 6.34 -2.39 -0.02 0.82 16 44 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 Total: -1.00 -64.66 327.50 -2.35 -67.02 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.95 Total: 11.46 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 4.40 Total: -19.00 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -8.13 Total: -96.28 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.61 Total: -9.66 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.66 -2.35 -67.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382472844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.098 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds