Wall clock time and date at job start Mon Mar 30 2020 01:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00439 * 2 1 4 4 H 1.48492 * 109.47137 * 240.00472 * 3 2 1 5 5 H 1.48499 * 109.46537 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47250 * 119.99984 * 3 2 1 7 7 C 1.37876 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00766 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99553 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00062 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47260 * 180.02562 * 11 10 9 13 13 N 1.46908 * 109.46985 * 64.99968 * 12 11 10 14 14 C 1.47900 * 110.99815 * 52.60588 * 13 12 11 15 15 C 1.54002 * 107.05481 * 145.84530 * 14 13 12 16 16 C 1.54591 * 105.14001 * 358.77246 * 15 14 13 17 17 H 1.08998 * 110.87929 * 96.47359 * 16 15 14 18 18 N 1.46904 * 110.72452 * 219.68853 * 16 15 14 19 19 C 1.48529 * 111.00168 * 171.10647 * 18 16 15 20 20 C 1.54935 * 103.22430 * 159.72030 * 19 18 16 21 21 C 1.54591 * 102.92308 * 322.58309 * 20 19 18 22 22 C 1.47907 * 110.99411 * 288.50347 * 18 16 15 23 23 C 1.48531 * 110.99911 * 170.00196 * 13 12 11 24 24 H 0.97000 * 119.99499 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47549 * 60.00052 * 9 7 2 26 26 H 1.09001 * 109.47119 * 299.99788 * 9 7 2 27 27 H 1.08995 * 109.47398 * 60.00085 * 11 10 9 28 28 H 1.09006 * 109.46643 * 300.00176 * 11 10 9 29 29 H 1.08995 * 109.47141 * 305.00355 * 12 11 10 30 30 H 1.08999 * 109.46953 * 184.99700 * 12 11 10 31 31 H 1.08993 * 109.92347 * 26.48923 * 14 13 12 32 32 H 1.09006 * 110.07646 * 265.28528 * 14 13 12 33 33 H 1.09004 * 110.30355 * 239.85493 * 15 14 13 34 34 H 1.09003 * 110.30666 * 117.69033 * 15 14 13 35 35 H 1.09004 * 110.66284 * 278.15265 * 19 18 16 36 36 H 1.08996 * 110.66886 * 41.28445 * 19 18 16 37 37 H 1.09011 * 110.72001 * 204.22494 * 20 19 18 38 38 H 1.08998 * 110.88208 * 81.01589 * 20 19 18 39 39 H 1.09005 * 110.31139 * 263.04333 * 21 20 19 40 40 H 1.08997 * 110.31111 * 140.87907 * 21 20 19 41 41 H 1.08996 * 109.91815 * 333.50459 * 22 18 16 42 42 H 1.08997 * 109.91853 * 94.80513 * 22 18 16 43 43 H 1.09001 * 110.67185 * 81.83947 * 23 13 12 44 44 H 1.09004 * 110.66470 * 318.71524 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5650 -4.8754 0.0019 12 6 2.6479 -5.9562 0.0023 13 7 3.4081 -5.8874 1.2575 14 6 2.5038 -5.9239 2.4274 15 6 3.2403 -6.6872 3.5439 16 6 4.5939 -7.1031 2.9235 17 1 5.3767 -6.3916 3.1864 18 7 4.9643 -8.4604 3.3463 19 6 6.1476 -8.9483 2.5928 20 6 6.6949 -10.0864 3.4904 21 6 6.4664 -9.5405 4.9186 22 6 5.3570 -8.4826 4.7722 23 6 4.3047 -7.0627 1.4019 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5562 0.8920 27 1 0.9445 -4.9826 -0.8877 28 1 0.9452 -4.9822 0.8923 29 1 3.3215 -5.7960 -0.8395 30 1 2.1819 -6.9375 -0.0869 31 1 1.5817 -6.4439 2.1679 32 1 2.2779 -4.9099 2.7574 33 1 2.6716 -7.5695 3.8375 34 1 3.4020 -6.0369 4.4036 35 1 5.8500 -9.3361 1.6185 36 1 6.8875 -8.1555 2.4829 37 1 7.7568 -10.2476 3.3043 38 1 6.1334 -11.0077 3.3353 39 1 7.3791 -9.0814 5.2986 40 1 6.1404 -10.3414 5.5821 41 1 5.7353 -7.5043 5.0684 42 1 4.5006 -8.7550 5.3889 43 1 5.2263 -6.9150 0.8390 44 1 3.7992 -7.9738 1.0820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385324464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:56 Heat of formation + Delta-G solvation = -37.396317 kcal Electronic energy + Delta-G solvation = -20778.970591 eV Core-core repulsion = 17731.052469 eV Total energy + Delta-G solvation = -3047.918122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81666 -38.02882 -36.33224 -33.21331 -32.48053 -30.45150 -29.47342 -28.45279 -27.17677 -26.11834 -22.80382 -22.22533 -22.08923 -21.05865 -20.35388 -19.55342 -16.76311 -16.45339 -16.23740 -15.90324 -15.37370 -15.04539 -14.29516 -14.17091 -14.08625 -13.75952 -13.50304 -13.24604 -13.03042 -12.66106 -12.41045 -12.06852 -11.66499 -11.61062 -11.57314 -11.40273 -11.12991 -10.97110 -10.94643 -10.84056 -10.78583 -10.70397 -10.61010 -10.33440 -9.91912 -9.05037 -8.74580 -8.62977 -8.12633 -8.08369 -6.05755 -4.06704 3.36053 3.38066 3.42634 3.63843 4.28273 4.31880 4.39675 4.43825 4.68403 4.72829 4.77411 4.97180 5.03875 5.15273 5.24964 5.30576 5.33150 5.42218 5.46808 5.51277 5.55847 5.59353 5.65181 5.71319 5.74950 5.76769 5.84984 5.92120 5.97592 6.03803 6.07426 6.13372 6.26992 6.40256 6.66314 6.85228 7.15277 7.15753 7.28484 7.48936 7.85970 8.22334 8.67132 9.07886 9.57947 11.05930 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032538 B = 0.003203 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.328675 B = 8739.989314 C = 9037.775050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.062 3.938 12 C 0.054 3.946 13 N -0.500 5.500 14 C 0.039 3.961 15 C -0.120 4.120 16 C 0.071 3.929 17 H 0.059 0.941 18 N -0.512 5.512 19 C 0.033 3.967 20 C -0.124 4.124 21 C -0.132 4.132 22 C 0.036 3.964 23 C 0.043 3.957 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 -20.529 7.802 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.300 6.300 11 C -0.016 4.016 12 C -0.074 4.074 13 N -0.225 5.225 14 C -0.089 4.089 15 C -0.158 4.158 16 C -0.038 4.038 17 H 0.077 0.923 18 N -0.236 5.236 19 C -0.094 4.094 20 C -0.162 4.162 21 C -0.170 4.170 22 C -0.092 4.092 23 C -0.085 4.085 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.911 -20.186 7.678 23.763 hybrid contribution 0.155 0.714 0.122 0.740 sum 10.066 -19.473 7.800 23.267 Atomic orbital electron populations 1.69958 1.06101 1.27151 1.50825 1.24949 0.94964 0.99395 0.95267 0.86400 0.79300 0.81951 0.78847 1.20035 1.21230 1.20018 1.21034 0.94073 0.89365 1.50444 0.91554 1.20171 0.88844 0.83902 0.95087 1.87957 1.34660 1.12329 1.95028 1.22326 0.93892 0.86300 0.99056 1.22309 0.96016 0.96131 0.92988 1.64756 1.18036 1.38028 1.01675 1.22845 0.94538 1.01093 0.90425 1.22426 0.95283 0.99871 0.98240 1.22741 0.97338 0.88482 0.95253 0.92338 1.64848 1.33520 1.22218 1.03063 1.23222 0.91444 0.96670 0.98088 1.22475 1.00746 0.98538 0.94417 1.22407 0.98398 0.98588 0.97595 1.22843 0.97841 0.98187 0.90317 1.23227 0.97943 0.92585 0.94774 0.92690 0.98013 0.97960 0.94249 0.94459 0.89951 0.94184 0.93871 0.89635 0.90666 0.91300 0.89978 0.93539 0.91177 0.90817 0.91595 0.91102 0.93616 0.90398 0.90477 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.49 5.69 36.01 0.20 5.69 16 10 O -0.38 -9.53 10.27 -35.23 -0.36 -9.89 16 11 C 0.06 1.20 5.81 37.16 0.22 1.42 16 12 C 0.05 0.86 5.38 -3.82 -0.02 0.84 16 13 N -0.50 -8.02 5.35 -230.45 -1.23 -9.25 16 14 C 0.04 0.58 5.24 -2.75 -0.01 0.57 16 15 C -0.12 -1.47 6.23 -25.37 -0.16 -1.63 16 16 C 0.07 0.85 2.49 -65.85 -0.16 0.69 16 17 H 0.06 0.76 7.91 -51.93 -0.41 0.34 16 18 N -0.51 -5.32 5.08 -220.29 -1.12 -6.44 16 19 C 0.03 0.30 5.77 -1.90 -0.01 0.29 16 20 C -0.12 -0.90 7.06 -24.87 -0.18 -1.08 16 21 C -0.13 -0.96 6.93 -25.38 -0.18 -1.14 16 22 C 0.04 0.32 6.30 -2.75 -0.02 0.31 16 23 C 0.04 0.56 5.20 -1.90 -0.01 0.55 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.70 6.45 -51.93 -0.33 0.37 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.04 0.54 7.89 -51.93 -0.41 0.13 16 31 H 0.04 0.61 7.17 -51.93 -0.37 0.24 16 32 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 33 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 36 H 0.05 0.43 8.02 -51.93 -0.42 0.01 16 37 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.43 7.63 -51.93 -0.40 0.03 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.63 7.85 -51.93 -0.41 0.22 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.97 344.61 -10.75 -42.72 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -8.20 Total: -5.14 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.75 Total: -7.75 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -1.62 Total: -42.42 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.36 Total: -9.89 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.97 -10.75 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385324464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.325 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds