Wall clock time and date at job start Mon Mar 30 2020 01:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00439 * 2 1 4 4 H 1.48492 * 109.47137 * 240.00472 * 3 2 1 5 5 H 1.48499 * 109.46537 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47250 * 119.99984 * 3 2 1 7 7 C 1.37876 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00766 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99553 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00062 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47260 * 180.02562 * 11 10 9 13 13 N 1.46908 * 109.46985 * 64.99968 * 12 11 10 14 14 C 1.47900 * 110.99815 * 52.60588 * 13 12 11 15 15 C 1.54002 * 107.05481 * 145.84530 * 14 13 12 16 16 C 1.54591 * 105.14001 * 358.77246 * 15 14 13 17 17 H 1.08998 * 110.87929 * 96.47359 * 16 15 14 18 18 N 1.46904 * 110.72452 * 219.68853 * 16 15 14 19 19 C 1.48529 * 111.00168 * 171.10647 * 18 16 15 20 20 C 1.54935 * 103.22430 * 159.72030 * 19 18 16 21 21 C 1.54591 * 102.92308 * 322.58309 * 20 19 18 22 22 C 1.47907 * 110.99411 * 288.50347 * 18 16 15 23 23 C 1.48531 * 110.99911 * 170.00196 * 13 12 11 24 24 H 0.97000 * 119.99499 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47549 * 60.00052 * 9 7 2 26 26 H 1.09001 * 109.47119 * 299.99788 * 9 7 2 27 27 H 1.08995 * 109.47398 * 60.00085 * 11 10 9 28 28 H 1.09006 * 109.46643 * 300.00176 * 11 10 9 29 29 H 1.08995 * 109.47141 * 305.00355 * 12 11 10 30 30 H 1.08999 * 109.46953 * 184.99700 * 12 11 10 31 31 H 1.08993 * 109.92347 * 26.48923 * 14 13 12 32 32 H 1.09006 * 110.07646 * 265.28528 * 14 13 12 33 33 H 1.09004 * 110.30355 * 239.85493 * 15 14 13 34 34 H 1.09003 * 110.30666 * 117.69033 * 15 14 13 35 35 H 1.09004 * 110.66284 * 278.15265 * 19 18 16 36 36 H 1.08996 * 110.66886 * 41.28445 * 19 18 16 37 37 H 1.09011 * 110.72001 * 204.22494 * 20 19 18 38 38 H 1.08998 * 110.88208 * 81.01589 * 20 19 18 39 39 H 1.09005 * 110.31139 * 263.04333 * 21 20 19 40 40 H 1.08997 * 110.31111 * 140.87907 * 21 20 19 41 41 H 1.08996 * 109.91815 * 333.50459 * 22 18 16 42 42 H 1.08997 * 109.91853 * 94.80513 * 22 18 16 43 43 H 1.09001 * 110.67185 * 81.83947 * 23 13 12 44 44 H 1.09004 * 110.66470 * 318.71524 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5650 -4.8754 0.0019 12 6 2.6479 -5.9562 0.0023 13 7 3.4081 -5.8874 1.2575 14 6 2.5038 -5.9239 2.4274 15 6 3.2403 -6.6872 3.5439 16 6 4.5939 -7.1031 2.9235 17 1 5.3767 -6.3916 3.1864 18 7 4.9643 -8.4604 3.3463 19 6 6.1476 -8.9483 2.5928 20 6 6.6949 -10.0864 3.4904 21 6 6.4664 -9.5405 4.9186 22 6 5.3570 -8.4826 4.7722 23 6 4.3047 -7.0627 1.4019 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5562 0.8920 27 1 0.9445 -4.9826 -0.8877 28 1 0.9452 -4.9822 0.8923 29 1 3.3215 -5.7960 -0.8395 30 1 2.1819 -6.9375 -0.0869 31 1 1.5817 -6.4439 2.1679 32 1 2.2779 -4.9099 2.7574 33 1 2.6716 -7.5695 3.8375 34 1 3.4020 -6.0369 4.4036 35 1 5.8500 -9.3361 1.6185 36 1 6.8875 -8.1555 2.4829 37 1 7.7568 -10.2476 3.3043 38 1 6.1334 -11.0077 3.3353 39 1 7.3791 -9.0814 5.2986 40 1 6.1404 -10.3414 5.5821 41 1 5.7353 -7.5043 5.0684 42 1 4.5006 -8.7550 5.3889 43 1 5.2263 -6.9150 0.8390 44 1 3.7992 -7.9738 1.0820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385324464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:56 Heat of formation + Delta-G solvation = -60.236559 kcal Electronic energy + Delta-G solvation = -20779.961019 eV Core-core repulsion = 17731.052469 eV Total energy + Delta-G solvation = -3048.908549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77575 -39.15970 -38.02177 -35.02020 -33.99526 -31.48055 -30.51325 -29.58662 -28.89384 -27.46566 -24.52045 -24.00181 -22.91600 -21.92306 -21.27011 -20.62326 -18.61073 -17.72458 -17.58930 -17.21617 -16.65775 -16.50674 -16.11986 -15.41819 -15.27814 -14.88398 -14.76275 -14.54339 -14.06695 -13.80189 -13.58047 -13.28903 -13.18827 -13.13144 -12.80675 -12.68984 -12.37375 -12.27239 -12.18375 -12.01584 -11.97513 -11.90104 -11.81349 -11.54175 -11.39652 -11.27969 -10.85768 -10.20108 -9.43842 -9.31377 -8.32219 -6.44462 1.39040 1.44324 1.52690 2.34759 2.72661 3.01231 3.14723 3.33514 3.46384 3.70325 3.75846 3.95877 4.08006 4.10797 4.20858 4.23885 4.26376 4.37894 4.46236 4.58307 4.59284 4.63615 4.68636 4.73694 4.80663 4.84202 4.92080 4.93991 4.97066 4.98346 5.02177 5.08754 5.14942 5.18043 5.23525 5.33031 5.54801 5.85998 5.90177 5.96643 6.08992 6.14232 6.55606 6.84457 7.27644 8.80052 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032538 B = 0.003203 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.328675 B = 8739.989314 C = 9037.775050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.396 6.396 11 C 0.053 3.947 12 C 0.063 3.937 13 N -0.530 5.530 14 C 0.040 3.960 15 C -0.111 4.111 16 C 0.078 3.922 17 H 0.046 0.954 18 N -0.516 5.516 19 C 0.029 3.971 20 C -0.119 4.119 21 C -0.129 4.129 22 C 0.032 3.968 23 C 0.050 3.950 24 H 0.271 0.729 25 H -0.016 1.016 26 H -0.018 1.018 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -21.350 8.132 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.316 6.316 11 C -0.024 4.024 12 C -0.065 4.065 13 N -0.255 5.255 14 C -0.088 4.088 15 C -0.149 4.149 16 C -0.031 4.031 17 H 0.064 0.936 18 N -0.241 5.241 19 C -0.098 4.098 20 C -0.157 4.157 21 C -0.167 4.167 22 C -0.096 4.096 23 C -0.077 4.077 24 H 0.080 0.920 25 H 0.002 0.998 26 H 0.000 1.000 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.141 -21.042 8.010 25.121 hybrid contribution -0.263 0.886 0.022 0.924 sum 10.878 -20.156 8.033 24.272 Atomic orbital electron populations 1.70064 1.07752 1.28704 1.50541 1.25973 0.95986 1.03396 0.93896 0.85234 0.78111 0.76676 0.79387 1.18948 1.19814 1.19101 1.21353 0.94030 0.90922 1.52217 0.92216 1.19784 0.88637 0.84950 0.93136 1.87910 1.34738 1.13847 1.95065 1.22664 0.95491 0.84627 0.99592 1.22229 0.95151 0.96011 0.93152 1.64675 1.18775 1.40229 1.01811 1.22760 0.95205 0.99745 0.91103 1.22345 0.95384 0.99885 0.97295 1.22590 0.96652 0.89300 0.94585 0.93643 1.64861 1.34524 1.20718 1.04020 1.23300 0.90894 0.97140 0.98495 1.22474 1.01575 0.97842 0.93810 1.22410 0.98004 0.98348 0.97907 1.22914 0.98622 0.98565 0.89474 1.23198 0.97370 0.91675 0.95506 0.92023 0.99810 1.00046 0.93291 0.94237 0.90088 0.90989 0.93204 0.92805 0.89582 0.91159 0.89735 0.93977 0.89792 0.90543 0.90951 0.90028 0.94269 0.90186 0.90190 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.98 45.51 29.54 68.60 2.03 47.54 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -33.86 9.43 25.60 0.24 -33.62 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.31 5.69 71.24 0.41 12.71 16 10 O -0.40 -20.41 10.27 -148.98 -1.53 -21.94 16 11 C 0.05 2.09 5.81 71.98 0.42 2.50 16 12 C 0.06 1.94 5.38 86.30 0.46 2.41 16 13 N -0.53 -16.80 5.35 -883.00 -4.72 -21.52 16 14 C 0.04 1.20 5.24 86.45 0.45 1.65 16 15 C -0.11 -2.65 6.23 31.47 0.20 -2.46 16 16 C 0.08 1.80 2.49 46.12 0.11 1.92 16 17 H 0.05 1.17 7.91 -2.39 -0.02 1.15 16 18 N -0.52 -9.94 5.08 -850.86 -4.32 -14.26 16 19 C 0.03 0.47 5.77 86.65 0.50 0.97 16 20 C -0.12 -1.46 7.06 31.80 0.22 -1.23 16 21 C -0.13 -1.59 6.93 31.47 0.22 -1.37 16 22 C 0.03 0.53 6.30 86.45 0.54 1.07 16 23 C 0.05 1.24 5.20 86.65 0.45 1.69 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.52 6.45 -2.38 -0.02 1.50 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 1.79 7.89 -2.39 -0.02 1.78 16 31 H 0.05 1.39 7.17 -2.39 -0.02 1.38 16 32 H 0.05 1.93 8.13 -2.38 -0.02 1.91 16 33 H 0.09 1.88 8.05 -2.38 -0.02 1.86 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.31 8.00 -2.39 -0.02 1.29 16 36 H 0.04 0.72 8.02 -2.39 -0.02 0.70 16 37 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.04 0.70 7.63 -2.39 -0.02 0.68 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.37 7.85 -2.39 -0.02 1.36 16 Total: -1.00 -68.85 344.61 -2.64 -71.49 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.93 Total: 8.62 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.69 Total: -12.95 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -8.76 Total: -92.77 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.53 Total: -21.94 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -68.85 -2.64 -71.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385324464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.255 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds