Wall clock time and date at job start Mon Mar 30 2020 01:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48499 * 109.46976 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47608 * 300.00046 * 3 2 1 6 6 H 1.48501 * 109.46923 * 60.00387 * 3 2 1 7 7 C 1.37879 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99906 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47017 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99789 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46736 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47351 * 65.00116 * 12 11 10 14 14 C 1.48562 * 110.99842 * 290.12526 * 13 12 11 15 15 C 1.54379 * 104.59486 * 200.96032 * 14 13 12 16 16 C 1.54266 * 105.05973 * 23.85004 * 15 14 13 17 17 H 1.09003 * 110.32265 * 241.10234 * 16 15 14 18 18 N 1.46904 * 110.32307 * 118.89641 * 16 15 14 19 19 C 1.48533 * 110.99987 * 304.05935 * 18 16 15 20 20 C 1.54937 * 103.22435 * 159.71687 * 19 18 16 21 21 C 1.54590 * 102.92561 * 322.58576 * 20 19 18 22 22 C 1.47910 * 110.99613 * 61.45594 * 18 16 15 23 23 C 1.48562 * 111.00142 * 174.70363 * 13 12 11 24 24 H 0.97002 * 119.99696 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99806 * 9 7 2 26 26 H 1.09004 * 109.46931 * 300.00081 * 9 7 2 27 27 H 1.08995 * 109.47409 * 60.00244 * 11 10 9 28 28 H 1.09000 * 109.47031 * 299.99651 * 11 10 9 29 29 H 1.08998 * 109.47414 * 304.99580 * 12 11 10 30 30 H 1.09002 * 109.46654 * 184.99933 * 12 11 10 31 31 H 1.08998 * 110.41528 * 82.17831 * 14 13 12 32 32 H 1.08997 * 110.50874 * 319.78619 * 14 13 12 33 33 H 1.08996 * 110.32596 * 264.95760 * 15 14 13 34 34 H 1.09000 * 110.41377 * 142.79352 * 15 14 13 35 35 H 1.08993 * 110.66519 * 278.15242 * 19 18 16 36 36 H 1.09005 * 110.66484 * 41.28598 * 19 18 16 37 37 H 1.08999 * 110.72451 * 204.21934 * 20 19 18 38 38 H 1.09005 * 110.71912 * 80.94595 * 20 19 18 39 39 H 1.09001 * 110.30933 * 263.04220 * 21 20 19 40 40 H 1.08998 * 110.31017 * 140.87253 * 21 20 19 41 41 H 1.08996 * 109.91626 * 333.50510 * 22 18 16 42 42 H 1.08993 * 109.91761 * 94.80623 * 22 18 16 43 43 H 1.09000 * 110.41111 * 40.26361 * 23 13 12 44 44 H 1.08989 * 110.41482 * 277.81625 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5650 -4.8754 -0.0019 12 6 2.6480 -5.9561 -0.0023 13 7 3.4080 -5.8882 1.2529 14 6 4.2462 -4.6626 1.3021 15 6 5.3394 -4.9806 2.3448 16 6 5.4311 -6.5202 2.3726 17 1 5.1867 -6.8962 3.3661 18 7 6.7763 -6.9584 1.9768 19 6 7.1417 -6.4163 0.6431 20 6 8.6880 -6.5138 0.6324 21 6 9.0668 -6.1609 2.0890 22 6 7.7983 -6.4451 2.9147 23 6 4.3857 -7.0030 1.3444 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 0.9453 -4.9823 -0.8922 28 1 0.9445 -4.9825 0.8878 29 1 3.3215 -5.7954 -0.8440 30 1 2.1819 -6.9374 -0.0922 31 1 3.6513 -3.8078 1.6236 32 1 4.6951 -4.4676 0.3282 33 1 5.0499 -4.6009 3.3246 34 1 6.2929 -4.5499 2.0393 35 1 6.7122 -7.0267 -0.1512 36 1 6.8210 -5.3788 0.5485 37 1 9.1153 -5.7915 -0.0631 38 1 9.0089 -7.5257 0.3847 39 1 9.3395 -5.1083 2.1646 40 1 9.8886 -6.7908 2.4294 41 1 7.4454 -5.5255 3.3814 42 1 8.0117 -7.1937 3.6775 43 1 4.8563 -7.1763 0.3766 44 1 3.8959 -7.9103 1.6977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385324465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:59 Heat of formation + Delta-G solvation = -35.015633 kcal Electronic energy + Delta-G solvation = -21364.017054 eV Core-core repulsion = 18316.202166 eV Total energy + Delta-G solvation = -3047.814888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14781 -37.73608 -36.27227 -33.15221 -32.48680 -30.26503 -29.19263 -28.52647 -27.18248 -26.26340 -22.56829 -22.42741 -21.98429 -21.13622 -20.28112 -19.36661 -16.74522 -16.36387 -16.13629 -15.83947 -15.58060 -14.75020 -14.49049 -14.33802 -13.83069 -13.63315 -13.58172 -12.99121 -12.78447 -12.53062 -12.28059 -12.18128 -11.65509 -11.53791 -11.33697 -11.28694 -11.18146 -11.04671 -10.91166 -10.75217 -10.73829 -10.70370 -10.44738 -10.41532 -9.95590 -9.08404 -8.80783 -8.45254 -8.20480 -8.12468 -6.11567 -4.13164 3.27567 3.34182 3.39837 3.78194 4.33094 4.34124 4.49100 4.53814 4.73058 4.83786 4.90899 4.98603 5.14787 5.20333 5.25110 5.35481 5.40587 5.49053 5.54518 5.61603 5.67668 5.68629 5.72683 5.79216 5.84199 5.90323 5.90981 6.02046 6.08438 6.11934 6.18829 6.28068 6.40365 6.69961 6.78627 6.87599 7.13033 7.22110 7.31133 7.45237 7.78464 8.15602 8.58684 9.00551 9.51804 11.00044 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.004275 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.188964 B = 6548.156307 C = 7433.801519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.195 3.805 10 O -0.394 6.394 11 C 0.066 3.934 12 C 0.051 3.949 13 N -0.506 5.506 14 C 0.049 3.951 15 C -0.161 4.161 16 C 0.072 3.928 17 H 0.091 0.909 18 N -0.510 5.510 19 C 0.025 3.975 20 C -0.123 4.123 21 C -0.131 4.131 22 C 0.032 3.968 23 C 0.038 3.962 24 H 0.263 0.737 25 H 0.003 0.997 26 H 0.005 0.995 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.016 -14.545 3.283 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.121 3.879 10 O -0.314 6.314 11 C -0.012 4.012 12 C -0.077 4.077 13 N -0.231 5.231 14 C -0.079 4.079 15 C -0.200 4.200 16 C -0.037 4.037 17 H 0.109 0.891 18 N -0.234 5.234 19 C -0.102 4.102 20 C -0.161 4.161 21 C -0.169 4.169 22 C -0.096 4.096 23 C -0.090 4.090 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.636 -14.985 3.711 20.597 hybrid contribution 0.465 1.813 -0.693 1.996 sum 14.101 -13.172 3.018 19.530 Atomic orbital electron populations 1.69974 1.06096 1.27001 1.50634 1.24942 0.94942 0.99383 0.95206 0.86322 0.79983 0.82782 0.77641 1.19560 1.20859 1.20832 1.21070 0.93933 0.89403 1.50653 0.91671 1.20167 0.88807 0.83623 0.95303 1.87856 1.35355 1.13027 1.95119 1.22232 0.94280 0.85315 0.99384 1.22278 0.96494 0.98329 0.90612 1.65426 1.21524 1.02265 1.33861 1.23099 0.93352 0.94303 0.97124 1.23074 0.99356 0.96593 1.00980 1.22605 0.88393 0.93316 0.99412 0.89102 1.64963 1.01371 1.54935 1.02125 1.23338 0.95206 0.99300 0.92367 1.22467 0.95301 1.01949 0.96431 1.22397 0.97673 1.01443 0.95421 1.22856 0.91608 0.99219 0.95904 1.23127 0.92475 0.95517 0.97918 0.92727 0.97946 0.97716 0.94229 0.93585 0.94271 0.90328 0.87800 0.93927 0.90996 0.91348 0.90246 0.92612 0.91156 0.90937 0.91556 0.91178 0.93080 0.90526 0.93467 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.96 9.43 -34.44 -0.32 -15.28 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.20 5.34 5.69 36.00 0.20 5.55 16 10 O -0.39 -9.28 7.56 -35.23 -0.27 -9.55 16 11 C 0.07 1.24 6.24 37.16 0.23 1.48 16 12 C 0.05 0.80 5.37 -3.83 -0.02 0.78 16 13 N -0.51 -7.92 5.37 -229.98 -1.24 -9.16 16 14 C 0.05 0.82 4.99 -2.18 -0.01 0.81 16 15 C -0.16 -2.19 4.90 -25.35 -0.12 -2.31 16 16 C 0.07 0.88 3.24 -66.33 -0.21 0.67 16 17 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 18 N -0.51 -5.74 5.35 -220.84 -1.18 -6.92 16 19 C 0.03 0.28 5.36 -1.90 -0.01 0.27 16 20 C -0.12 -1.11 7.06 -24.87 -0.18 -1.29 16 21 C -0.13 -1.13 6.93 -25.38 -0.18 -1.30 16 22 C 0.03 0.31 6.26 -2.75 -0.02 0.30 16 23 C 0.04 0.49 5.98 -2.18 -0.01 0.48 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.62 7.88 -51.93 -0.41 0.21 16 30 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.10 2.11 6.80 -51.93 -0.35 1.76 16 32 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.90 5.45 -51.93 -0.28 0.62 16 35 H 0.08 0.87 7.07 -51.93 -0.37 0.50 16 36 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.52 6.35 -51.93 -0.33 0.19 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.61 6.02 -51.93 -0.31 0.29 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -30.24 334.04 -10.46 -40.70 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.78 Total: -2.36 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.75 Total: -8.33 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -1.68 Total: -42.27 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.27 Total: -9.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.24 -10.46 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385324465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.681 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds