Wall clock time and date at job start Mon Mar 30 2020 01:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48499 * 109.46976 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47608 * 300.00046 * 3 2 1 6 6 H 1.48501 * 109.46923 * 60.00387 * 3 2 1 7 7 C 1.37879 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99906 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47017 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99789 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46736 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47351 * 65.00116 * 12 11 10 14 14 C 1.48562 * 110.99842 * 290.12526 * 13 12 11 15 15 C 1.54379 * 104.59486 * 200.96032 * 14 13 12 16 16 C 1.54266 * 105.05973 * 23.85004 * 15 14 13 17 17 H 1.09003 * 110.32265 * 241.10234 * 16 15 14 18 18 N 1.46904 * 110.32307 * 118.89641 * 16 15 14 19 19 C 1.48533 * 110.99987 * 304.05935 * 18 16 15 20 20 C 1.54937 * 103.22435 * 159.71687 * 19 18 16 21 21 C 1.54590 * 102.92561 * 322.58576 * 20 19 18 22 22 C 1.47910 * 110.99613 * 61.45594 * 18 16 15 23 23 C 1.48562 * 111.00142 * 174.70363 * 13 12 11 24 24 H 0.97002 * 119.99696 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99806 * 9 7 2 26 26 H 1.09004 * 109.46931 * 300.00081 * 9 7 2 27 27 H 1.08995 * 109.47409 * 60.00244 * 11 10 9 28 28 H 1.09000 * 109.47031 * 299.99651 * 11 10 9 29 29 H 1.08998 * 109.47414 * 304.99580 * 12 11 10 30 30 H 1.09002 * 109.46654 * 184.99933 * 12 11 10 31 31 H 1.08998 * 110.41528 * 82.17831 * 14 13 12 32 32 H 1.08997 * 110.50874 * 319.78619 * 14 13 12 33 33 H 1.08996 * 110.32596 * 264.95760 * 15 14 13 34 34 H 1.09000 * 110.41377 * 142.79352 * 15 14 13 35 35 H 1.08993 * 110.66519 * 278.15242 * 19 18 16 36 36 H 1.09005 * 110.66484 * 41.28598 * 19 18 16 37 37 H 1.08999 * 110.72451 * 204.21934 * 20 19 18 38 38 H 1.09005 * 110.71912 * 80.94595 * 20 19 18 39 39 H 1.09001 * 110.30933 * 263.04220 * 21 20 19 40 40 H 1.08998 * 110.31017 * 140.87253 * 21 20 19 41 41 H 1.08996 * 109.91626 * 333.50510 * 22 18 16 42 42 H 1.08993 * 109.91761 * 94.80623 * 22 18 16 43 43 H 1.09000 * 110.41111 * 40.26361 * 23 13 12 44 44 H 1.08989 * 110.41482 * 277.81625 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5650 -4.8754 -0.0019 12 6 2.6480 -5.9561 -0.0023 13 7 3.4080 -5.8882 1.2529 14 6 4.2462 -4.6626 1.3021 15 6 5.3394 -4.9806 2.3448 16 6 5.4311 -6.5202 2.3726 17 1 5.1867 -6.8962 3.3661 18 7 6.7763 -6.9584 1.9768 19 6 7.1417 -6.4163 0.6431 20 6 8.6880 -6.5138 0.6324 21 6 9.0668 -6.1609 2.0890 22 6 7.7983 -6.4451 2.9147 23 6 4.3857 -7.0030 1.3444 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 0.9453 -4.9823 -0.8922 28 1 0.9445 -4.9825 0.8878 29 1 3.3215 -5.7954 -0.8440 30 1 2.1819 -6.9374 -0.0922 31 1 3.6513 -3.8078 1.6236 32 1 4.6951 -4.4676 0.3282 33 1 5.0499 -4.6009 3.3246 34 1 6.2929 -4.5499 2.0393 35 1 6.7122 -7.0267 -0.1512 36 1 6.8210 -5.3788 0.5485 37 1 9.1153 -5.7915 -0.0631 38 1 9.0089 -7.5257 0.3847 39 1 9.3395 -5.1083 2.1646 40 1 9.8886 -6.7908 2.4294 41 1 7.4454 -5.5255 3.3814 42 1 8.0117 -7.1937 3.6775 43 1 4.8563 -7.1763 0.3766 44 1 3.8959 -7.9103 1.6977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385324465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:58 Heat of formation + Delta-G solvation = -56.417394 kcal Electronic energy + Delta-G solvation = -21364.945104 eV Core-core repulsion = 18316.202166 eV Total energy + Delta-G solvation = -3048.742938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16037 -39.06949 -37.82413 -35.02155 -33.93664 -31.43255 -30.24230 -29.74904 -28.89500 -27.63076 -24.59371 -23.55430 -23.29553 -22.12590 -21.35630 -20.35272 -18.63951 -17.72155 -17.47826 -17.36720 -16.68058 -16.36739 -16.12797 -15.50988 -15.19561 -15.04879 -14.78340 -14.36380 -13.95449 -13.71971 -13.67950 -13.23933 -13.12147 -12.98264 -12.93146 -12.62869 -12.35661 -12.32068 -12.19675 -12.11617 -12.06681 -11.92686 -11.74511 -11.50625 -11.39961 -11.24837 -10.87385 -10.20294 -9.46835 -9.34649 -8.33696 -6.45801 1.37615 1.39010 1.53269 2.32535 2.80100 3.00304 3.20798 3.23349 3.57404 3.72322 3.75171 3.90680 4.04888 4.15256 4.19936 4.31207 4.34303 4.38997 4.52595 4.52804 4.60387 4.66164 4.74239 4.75980 4.80424 4.84403 4.90186 4.94506 4.96491 5.05017 5.09450 5.10931 5.17250 5.21681 5.27110 5.32435 5.53226 5.77181 5.91494 5.95013 6.07265 6.13940 6.52568 6.81154 7.26234 8.79042 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.004275 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.188964 B = 6548.156307 C = 7433.801519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.211 3.789 10 O -0.400 6.400 11 C 0.057 3.943 12 C 0.059 3.941 13 N -0.517 5.517 14 C 0.055 3.945 15 C -0.151 4.151 16 C 0.080 3.920 17 H 0.098 0.902 18 N -0.510 5.510 19 C 0.022 3.978 20 C -0.120 4.120 21 C -0.129 4.129 22 C 0.028 3.972 23 C 0.042 3.958 24 H 0.270 0.730 25 H -0.017 1.017 26 H -0.019 1.019 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.783 -15.246 3.503 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.078 0.922 9 C 0.136 3.864 10 O -0.320 6.320 11 C -0.021 4.021 12 C -0.069 4.069 13 N -0.242 5.242 14 C -0.073 4.073 15 C -0.190 4.190 16 C -0.030 4.030 17 H 0.116 0.884 18 N -0.234 5.234 19 C -0.105 4.105 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.099 4.099 23 C -0.085 4.085 24 H 0.079 0.921 25 H 0.001 0.999 26 H -0.001 1.001 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.409 -15.716 3.932 22.359 hybrid contribution -0.127 1.944 -0.759 2.091 sum 15.282 -13.772 3.173 20.815 Atomic orbital electron populations 1.70081 1.07778 1.28538 1.50643 1.25944 0.95914 1.03334 0.93979 0.85167 0.78653 0.77480 0.78299 1.18860 1.19613 1.19685 1.21366 0.93919 0.90772 1.51981 0.92161 1.19764 0.88651 0.84866 0.93136 1.87855 1.34924 1.14115 1.95083 1.22548 0.95836 0.84078 0.99598 1.22261 0.95599 0.98391 0.90629 1.65382 1.22304 1.02670 1.33858 1.22856 0.93673 0.93678 0.97129 1.22986 0.98276 0.98116 0.99649 1.22538 0.89100 0.91780 0.99585 0.88408 1.64998 1.01066 1.54779 1.02547 1.23349 0.96782 0.98129 0.92248 1.22467 0.93668 1.02653 0.96973 1.22407 0.97491 1.01946 0.94814 1.22947 0.91721 0.99235 0.96031 1.23164 0.92096 0.94837 0.98439 0.92072 0.99905 1.00101 0.93251 0.94073 0.94446 0.86870 0.92055 0.95456 0.91224 0.90958 0.90378 0.94378 0.90503 0.90173 0.91394 0.89621 0.93692 0.89501 0.93077 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.98 44.74 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -32.61 9.43 25.60 0.24 -32.37 16 8 H 0.06 3.59 7.81 -2.92 -0.02 3.57 16 9 C 0.21 12.07 5.69 71.24 0.41 12.47 16 10 O -0.40 -19.63 7.56 -148.98 -1.13 -20.76 16 11 C 0.06 2.18 6.24 71.98 0.45 2.63 16 12 C 0.06 1.81 5.37 86.30 0.46 2.27 16 13 N -0.52 -15.96 5.37 -881.52 -4.73 -20.69 16 14 C 0.05 1.89 4.99 86.45 0.43 2.32 16 15 C -0.15 -4.09 4.90 31.49 0.15 -3.94 16 16 C 0.08 1.84 3.24 45.81 0.15 1.99 16 17 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 18 N -0.51 -10.53 5.35 -852.61 -4.56 -15.09 16 19 C 0.02 0.46 5.36 86.65 0.46 0.93 16 20 C -0.12 -1.91 7.06 31.80 0.22 -1.68 16 21 C -0.13 -1.91 6.93 31.47 0.22 -1.69 16 22 C 0.03 0.50 6.26 86.45 0.54 1.04 16 23 C 0.04 1.02 5.98 86.45 0.52 1.54 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.16 7.88 -2.39 -0.02 1.14 16 30 H 0.11 2.68 8.13 -2.39 -0.02 2.66 16 31 H 0.06 2.64 6.80 -2.39 -0.02 2.62 16 32 H 0.03 1.00 7.60 -2.39 -0.02 0.98 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.90 5.45 -2.39 -0.01 1.88 16 35 H 0.08 1.61 7.07 -2.39 -0.02 1.59 16 36 H 0.04 0.92 5.57 -2.38 -0.01 0.91 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.04 0.85 6.35 -2.39 -0.02 0.84 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.21 6.02 -2.39 -0.01 1.20 16 44 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.93 334.04 -2.44 -68.37 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.95 Total: 11.40 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.72 Total: -13.65 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -9.01 Total: -92.12 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.13 Total: -20.76 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.93 -2.44 -68.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385324465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.956 kcal (2) G-P(sol) polarization free energy of solvation -65.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds