Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52997 * 109.47164 * 59.99836 * 4 2 1 6 6 C 1.53002 * 109.47092 * 60.00174 * 5 4 2 7 7 C 1.52997 * 109.46965 * 299.99543 * 6 5 4 8 8 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 9 9 H 1.09000 * 109.47486 * 180.02562 * 8 2 1 10 10 N 1.46506 * 109.47075 * 59.99940 * 8 2 1 11 11 C 1.34771 * 120.00011 * 154.99805 * 10 8 2 12 12 O 1.21582 * 120.00494 * 0.02562 * 11 10 8 13 13 N 1.34784 * 119.99783 * 180.02562 * 11 10 8 14 14 C 1.46501 * 119.99679 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46957 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47396 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99648 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00137 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00214 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00099 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46833 * 60.00047 * 20 18 16 22 22 H 1.48493 * 109.47091 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46736 * 300.00314 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47140 * 299.99948 * 5 4 2 34 34 H 1.09000 * 109.47312 * 59.99880 * 6 5 4 35 35 H 1.09004 * 109.46930 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46989 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.47530 * 300.00569 * 7 6 5 38 38 H 0.97008 * 119.99717 * 335.00453 * 10 8 2 39 39 H 0.96995 * 119.99688 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47064 * 299.99384 * 14 13 11 41 41 H 1.09000 * 109.47589 * 60.00128 * 14 13 11 42 42 H 1.09004 * 109.47389 * 300.00089 * 15 14 13 43 43 H 1.09003 * 109.47291 * 59.99829 * 15 14 13 44 44 H 0.97000 * 120.00050 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0400 -2.8850 -0.0001 7 6 1.5299 -2.1638 -1.2493 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7217 -1.2490 10 7 1.5517 -0.0307 -2.4454 11 6 2.2285 -0.1334 -3.6063 12 8 3.2441 -0.7995 -3.6611 13 7 1.7795 0.5024 -4.7067 14 6 2.5149 0.3902 -5.9688 15 6 1.7976 1.2001 -7.0507 16 6 2.5544 1.0853 -8.3488 17 1 3.4565 0.4935 -8.3973 18 6 2.0945 1.7349 -9.4746 19 7 0.9957 2.4552 -9.4156 20 14 3.0323 1.5920 -11.0839 21 1 3.0975 0.1662 -11.4939 22 1 2.3354 2.3772 -12.1342 23 1 4.4090 2.1186 -10.9030 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 1.8930 -2.6776 2.1394 33 1 0.4400 -2.1638 1.2492 34 1 3.1300 -2.8850 -0.0001 35 1 1.6770 -3.9129 0.0001 36 1 1.8936 -2.6773 -2.1393 37 1 0.4400 -2.1637 -1.2492 38 1 0.7412 0.5006 -2.4018 39 1 0.9690 1.0335 -4.6631 40 1 3.5256 0.7760 -5.8358 41 1 2.5621 -0.6562 -6.2701 42 1 0.7869 0.8140 -7.1835 43 1 1.7500 2.2466 -6.7496 44 1 0.6720 2.9119 -10.2078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408182054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = -68.334196 kcal Electronic energy + Delta-G solvation = -21074.557732 eV Core-core repulsion = 18025.298043 eV Total energy + Delta-G solvation = -3049.259689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50479 -38.71998 -34.84421 -34.06249 -33.19406 -32.76037 -30.14678 -28.86875 -27.57666 -26.33719 -24.64025 -22.73924 -21.29141 -20.90968 -20.34758 -18.89466 -17.77214 -16.40831 -16.13774 -15.18280 -15.08718 -14.86507 -14.54776 -14.46429 -14.03779 -13.76531 -13.40810 -13.23524 -13.00117 -12.89052 -12.27025 -12.19887 -12.09202 -11.73302 -11.66097 -11.31197 -11.16578 -11.10885 -10.98985 -10.62916 -10.52817 -10.40825 -10.25747 -10.21318 -9.84275 -9.50538 -9.23908 -8.86864 -8.44908 -8.18415 -6.06832 -4.09392 3.13140 3.33151 3.36690 3.40710 3.67597 4.38462 4.41587 4.46828 4.57957 4.75926 4.86162 5.01437 5.08800 5.21247 5.21481 5.30152 5.36029 5.46527 5.48149 5.57615 5.64621 5.72684 5.81178 5.84537 5.90953 5.96707 5.98493 6.06897 6.15383 6.22027 6.35177 6.39841 6.44288 6.76879 6.83011 7.06979 7.33179 7.60698 7.66747 7.92599 8.29523 8.51792 8.95819 9.08986 9.55175 11.04833 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041526 B = 0.003230 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.111097 B = 8665.660894 C = 8945.788481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.178 3.822 9 H 0.085 0.915 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.599 6.599 13 N -0.740 5.740 14 C 0.141 3.859 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.391 0.609 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -5.178 22.883 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.172 4.172 8 C 0.072 3.928 9 H 0.103 0.897 10 N -0.404 5.404 11 C 0.398 3.602 12 O -0.478 6.478 13 N -0.394 5.394 14 C 0.018 3.982 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.001 -5.670 22.669 23.453 hybrid contribution -0.375 0.521 -0.961 1.156 sum -2.376 -5.149 21.708 22.436 Atomic orbital electron populations 1.21996 0.94446 1.02302 1.01612 1.20793 0.96053 0.95647 0.94711 1.21852 1.01287 0.94934 1.01766 1.21561 1.00843 0.95339 0.96555 1.21615 1.01014 0.95519 0.97855 1.21488 1.01060 0.98774 0.94117 1.22003 1.00912 0.95844 0.98421 1.20697 0.99409 0.90370 0.82320 0.89673 1.45280 1.30135 1.55851 1.09087 1.16090 0.83240 0.80478 0.80382 1.90874 1.26194 1.45976 1.84727 1.45538 1.30338 1.53501 1.10003 1.21561 0.95166 1.00682 0.80794 1.19315 0.96084 0.95060 0.91950 1.21026 1.10171 1.30742 0.94026 0.92281 1.24993 0.95068 0.95063 0.99162 1.69948 1.21880 1.31904 1.29683 0.86571 0.79965 0.78239 0.82757 1.20108 1.21270 1.20100 0.92762 0.92497 0.91697 0.92684 0.92537 0.92286 0.91689 0.91673 0.92110 0.91667 0.91815 0.91975 0.91235 0.91731 0.77412 0.77537 0.92879 0.92890 0.96022 0.96021 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.61 37.16 0.28 -0.83 16 2 C -0.07 -0.62 0.56 -154.51 -0.09 -0.71 16 3 C -0.14 -1.26 8.32 37.15 0.31 -0.95 16 4 C -0.11 -0.81 4.73 -26.73 -0.13 -0.93 16 5 C -0.12 -0.91 5.65 -26.73 -0.15 -1.06 16 6 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 7 C -0.13 -1.48 5.22 -26.73 -0.14 -1.62 16 8 C 0.18 2.07 1.59 -67.93 -0.11 1.96 16 9 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 10 N -0.75 -9.73 4.31 -58.67 -0.25 -9.99 16 11 C 0.70 12.47 8.53 -86.92 -0.74 11.73 16 12 O -0.60 -13.08 16.01 5.29 0.08 -13.00 16 13 N -0.74 -13.43 5.56 -65.22 -0.36 -13.80 16 14 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 15 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.05 0.41 6.51 -51.93 -0.34 0.07 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 38 H 0.39 4.18 6.67 -40.82 -0.27 3.91 16 39 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -31.73 339.66 -8.88 -40.62 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.69 Total: 3.86 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.50 Total: -3.75 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.12 Total: -49.42 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.73 -8.88 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408182054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.718 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds