Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52997 * 109.47164 * 59.99836 * 4 2 1 6 6 C 1.53002 * 109.47092 * 60.00174 * 5 4 2 7 7 C 1.52997 * 109.46965 * 299.99543 * 6 5 4 8 8 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 9 9 H 1.09000 * 109.47486 * 180.02562 * 8 2 1 10 10 N 1.46506 * 109.47075 * 59.99940 * 8 2 1 11 11 C 1.34771 * 120.00011 * 154.99805 * 10 8 2 12 12 O 1.21582 * 120.00494 * 0.02562 * 11 10 8 13 13 N 1.34784 * 119.99783 * 180.02562 * 11 10 8 14 14 C 1.46501 * 119.99679 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46957 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47396 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99648 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00137 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00214 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00099 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46833 * 60.00047 * 20 18 16 22 22 H 1.48493 * 109.47091 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46736 * 300.00314 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47140 * 299.99948 * 5 4 2 34 34 H 1.09000 * 109.47312 * 59.99880 * 6 5 4 35 35 H 1.09004 * 109.46930 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46989 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.47530 * 300.00569 * 7 6 5 38 38 H 0.97008 * 119.99717 * 335.00453 * 10 8 2 39 39 H 0.96995 * 119.99688 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47064 * 299.99384 * 14 13 11 41 41 H 1.09000 * 109.47589 * 60.00128 * 14 13 11 42 42 H 1.09004 * 109.47389 * 300.00089 * 15 14 13 43 43 H 1.09003 * 109.47291 * 59.99829 * 15 14 13 44 44 H 0.97000 * 120.00050 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0400 -2.8850 -0.0001 7 6 1.5299 -2.1638 -1.2493 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7217 -1.2490 10 7 1.5517 -0.0307 -2.4454 11 6 2.2285 -0.1334 -3.6063 12 8 3.2441 -0.7995 -3.6611 13 7 1.7795 0.5024 -4.7067 14 6 2.5149 0.3902 -5.9688 15 6 1.7976 1.2001 -7.0507 16 6 2.5544 1.0853 -8.3488 17 1 3.4565 0.4935 -8.3973 18 6 2.0945 1.7349 -9.4746 19 7 0.9957 2.4552 -9.4156 20 14 3.0323 1.5920 -11.0839 21 1 3.0975 0.1662 -11.4939 22 1 2.3354 2.3772 -12.1342 23 1 4.4090 2.1186 -10.9030 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 1.8930 -2.6776 2.1394 33 1 0.4400 -2.1638 1.2492 34 1 3.1300 -2.8850 -0.0001 35 1 1.6770 -3.9129 0.0001 36 1 1.8936 -2.6773 -2.1393 37 1 0.4400 -2.1637 -1.2492 38 1 0.7412 0.5006 -2.4018 39 1 0.9690 1.0335 -4.6631 40 1 3.5256 0.7760 -5.8358 41 1 2.5621 -0.6562 -6.2701 42 1 0.7869 0.8140 -7.1835 43 1 1.7500 2.2466 -6.7496 44 1 0.6720 2.9119 -10.2078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408182054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = -88.425518 kcal Electronic energy + Delta-G solvation = -21075.428957 eV Core-core repulsion = 18025.298043 eV Total energy + Delta-G solvation = -3050.130914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58079 -39.95000 -36.59838 -35.21638 -34.74991 -34.03416 -31.70896 -30.14424 -28.23192 -27.27033 -26.46300 -23.82698 -22.78375 -22.03759 -21.69426 -19.97474 -18.92938 -18.41976 -17.37063 -16.61625 -16.50694 -16.14053 -15.71660 -15.50681 -15.35271 -14.95242 -14.78184 -14.30453 -14.27608 -13.89903 -13.77527 -13.21740 -12.95463 -12.90826 -12.80117 -12.53665 -12.52218 -12.33560 -12.22054 -12.08042 -11.83503 -11.66558 -11.52413 -11.31606 -11.17902 -11.07420 -10.95088 -10.59940 -10.23928 -9.66711 -8.23938 -6.34420 1.41713 1.44381 1.52191 1.80017 2.20014 2.41583 3.10697 3.38627 3.60967 3.74095 3.90064 4.13084 4.26123 4.37513 4.42894 4.44627 4.50351 4.51744 4.56415 4.75984 4.81978 4.85810 4.86200 4.96998 5.06793 5.10359 5.11530 5.18887 5.22912 5.27808 5.32090 5.38706 5.42821 5.46644 5.52465 5.59248 5.62363 5.69137 5.79317 6.08411 6.17531 6.78435 7.15909 7.34894 7.64007 8.87830 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041526 B = 0.003230 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.111097 B = 8665.660894 C = 8945.788481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.129 4.129 8 C 0.174 3.826 9 H 0.056 0.944 10 N -0.726 5.726 11 C 0.697 3.303 12 O -0.640 6.640 13 N -0.735 5.735 14 C 0.162 3.838 15 C 0.025 3.975 16 C -0.549 4.549 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.268 1.268 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.406 0.594 39 H 0.406 0.594 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -5.164 24.256 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.168 4.168 8 C 0.069 3.931 9 H 0.074 0.926 10 N -0.382 5.382 11 C 0.397 3.603 12 O -0.523 6.523 13 N -0.390 5.390 14 C 0.037 3.963 15 C -0.012 4.012 16 C -0.587 4.587 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.193 1.193 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.244 0.756 39 H 0.241 0.759 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.848 -5.642 24.091 24.907 hybrid contribution -0.137 0.516 -1.333 1.436 sum -2.985 -5.126 22.758 23.519 Atomic orbital electron populations 1.22007 0.92978 1.02813 1.02485 1.20759 0.97094 0.95175 0.93379 1.21861 1.00519 0.95151 1.02325 1.21582 1.00476 0.95652 0.96495 1.21596 1.01623 0.95053 0.97182 1.21486 1.00437 0.99336 0.94014 1.21948 1.01567 0.95128 0.98114 1.20863 0.97931 0.91318 0.82941 0.92613 1.45143 1.29903 1.55241 1.07935 1.16208 0.82978 0.79927 0.81191 1.90847 1.28209 1.47715 1.85486 1.45228 1.30625 1.54034 1.09082 1.21044 0.94509 0.99127 0.81605 1.19111 0.95361 0.94528 0.92210 1.21443 1.10622 1.31096 0.95542 0.92355 1.25868 0.95941 0.94497 1.02799 1.70050 1.23179 1.32488 1.30868 0.85498 0.78738 0.78560 0.78257 1.19351 1.20480 1.19339 0.92822 0.90762 0.91350 0.90688 0.93823 0.93150 0.92484 0.89666 0.90652 0.90546 0.92914 0.91068 0.94769 0.90388 0.75633 0.75923 0.94032 0.94055 0.97325 0.97322 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 7.61 71.98 0.55 -1.24 16 2 C -0.06 -0.99 0.56 -52.18 -0.03 -1.02 16 3 C -0.14 -2.31 8.32 71.98 0.60 -1.71 16 4 C -0.10 -1.35 4.73 30.60 0.14 -1.21 16 5 C -0.12 -1.43 5.65 30.59 0.17 -1.26 16 6 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 7 C -0.13 -2.84 5.22 30.59 0.16 -2.68 16 8 C 0.17 4.04 1.59 44.99 0.07 4.11 16 9 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 10 N -0.73 -18.76 4.31 -457.80 -1.97 -20.73 16 11 C 0.70 25.34 8.53 179.05 1.53 26.86 16 12 O -0.64 -28.97 16.01 -3.97 -0.06 -29.03 16 13 N -0.73 -26.99 5.56 -478.53 -2.66 -29.65 16 14 C 0.16 7.29 5.61 86.38 0.48 7.77 16 15 C 0.03 1.31 5.09 29.85 0.15 1.46 16 16 C -0.55 -31.23 9.11 25.60 0.23 -31.00 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 20 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H 0.05 0.67 6.51 -2.39 -0.02 0.65 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.81 4.81 -2.38 -0.01 0.80 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.90 7.45 -2.39 -0.02 0.88 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.80 6.43 -2.39 -0.02 0.79 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.49 6.43 -2.39 -0.02 1.48 16 38 H 0.41 8.19 6.67 -92.70 -0.62 7.57 16 39 H 0.41 12.63 8.49 -92.71 -0.79 11.84 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 44 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -69.03 339.66 1.90 -67.13 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.42 Total: 21.42 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 4.71 Total: -0.77 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.35 Total: -104.86 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.06 Total: -29.03 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.03 1.90 -67.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408182054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.292 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds