Wall clock time and date at job start Mon Mar 30 2020 01:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 C 1.53002 * 109.46925 * 119.99621 * 2 1 3 5 5 C 1.52997 * 109.47415 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 300.00027 * 5 4 2 7 7 C 1.52999 * 109.46626 * 59.99702 * 6 5 4 8 8 C 1.52996 * 109.47577 * 239.99595 * 2 1 3 9 9 H 1.09000 * 109.47054 * 300.00355 * 8 2 1 10 10 N 1.46500 * 109.46993 * 60.00300 * 8 2 1 11 11 C 1.34773 * 119.99955 * 205.00166 * 10 8 2 12 12 O 1.21581 * 120.00224 * 359.97438 * 11 10 8 13 13 N 1.34784 * 119.99713 * 180.02562 * 11 10 8 14 14 C 1.46507 * 119.99409 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46323 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.46560 * 180.02562 * 15 14 13 17 17 H 1.07989 * 120.00299 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00377 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47219 * 90.00106 * 20 18 16 22 22 H 1.48506 * 109.47620 * 209.99977 * 20 18 16 23 23 H 1.48500 * 109.47145 * 330.00342 * 20 18 16 24 24 H 1.08992 * 109.47458 * 300.00366 * 1 2 3 25 25 H 1.09001 * 109.46885 * 60.00386 * 1 2 3 26 26 H 1.08999 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47502 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47533 * 299.99827 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99456 * 3 2 1 30 30 H 1.09000 * 109.46986 * 60.00086 * 4 2 1 31 31 H 1.09001 * 109.47601 * 300.00809 * 4 2 1 32 32 H 1.09001 * 109.46922 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47140 * 59.99976 * 5 4 2 34 34 H 1.08993 * 109.46955 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47050 * 300.00004 * 6 5 4 36 36 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 37 37 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 38 38 H 0.97001 * 119.99882 * 25.00048 * 10 8 2 39 39 H 0.96988 * 120.00163 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.47222 * 299.99429 * 14 13 11 41 41 H 1.08995 * 109.47136 * 60.00266 * 14 13 11 42 42 H 1.08999 * 109.47460 * 299.99585 * 15 14 13 43 43 H 1.08997 * 109.47789 * 60.00260 * 15 14 13 44 44 H 0.96997 * 120.00484 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2498 6 6 4.0805 -1.4417 0.0005 7 6 3.5705 -0.7205 -1.2487 8 6 2.0401 -0.7213 -1.2491 9 1 1.6767 -1.7490 -1.2491 10 7 1.5518 -0.0307 -2.4454 11 6 1.4232 -0.7031 -3.6063 12 8 1.7127 -1.8827 -3.6609 13 7 0.9745 -0.0676 -4.7069 14 6 0.8352 -0.7985 -5.9690 15 6 0.3108 0.1478 -7.0509 16 6 0.1669 -0.6041 -8.3491 17 1 0.4241 -1.6518 -8.3976 18 6 -0.2932 0.0457 -9.4747 19 7 -0.6070 1.3215 -9.4155 20 14 -0.4710 -0.8860 -11.0839 21 1 -1.8328 -1.4721 -11.1688 22 1 -0.2613 0.0456 -12.2212 23 1 0.5399 -1.9724 -11.1411 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7488 1.2493 31 1 1.6765 -0.2074 2.1393 32 1 3.9331 -1.2349 2.1396 33 1 3.9329 0.3071 1.2499 34 1 5.1704 -1.4417 0.0011 35 1 3.7175 -2.4695 0.0004 36 1 3.9335 0.3073 -1.2485 37 1 3.9339 -1.2344 -2.1386 38 1 1.3211 0.9104 -2.4018 39 1 0.7445 0.8736 -4.6636 40 1 1.8059 -1.1924 -6.2698 41 1 0.1339 -1.6223 -5.8363 42 1 -0.6601 0.5414 -6.7500 43 1 1.0116 0.9719 -7.1838 44 1 -0.9311 1.7786 -10.2073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408182055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:34 Heat of formation + Delta-G solvation = -68.349298 kcal Electronic energy + Delta-G solvation = -21074.498972 eV Core-core repulsion = 18025.238628 eV Total energy + Delta-G solvation = -3049.260344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50411 -38.72012 -34.84474 -34.06294 -33.19310 -32.76072 -30.14598 -28.86874 -27.57702 -26.33742 -24.64170 -22.74020 -21.29106 -20.91110 -20.34805 -18.89491 -17.77240 -16.40962 -16.13919 -15.18346 -15.08726 -14.86545 -14.54755 -14.46045 -14.03849 -13.76508 -13.40798 -13.23498 -13.00129 -12.89138 -12.27469 -12.20047 -12.09221 -11.73386 -11.66073 -11.31244 -11.15926 -11.10991 -11.00641 -10.61178 -10.52776 -10.40944 -10.26360 -10.21393 -9.83929 -9.50827 -9.22699 -8.86868 -8.45310 -8.18494 -6.07053 -4.09500 3.13162 3.31215 3.37277 3.42176 3.67578 4.38483 4.41555 4.46833 4.57954 4.75923 4.86155 5.01437 5.08825 5.21245 5.21503 5.30043 5.35895 5.46526 5.48105 5.57646 5.64599 5.72656 5.81198 5.84553 5.90943 5.96704 5.98508 6.06885 6.15383 6.22014 6.35178 6.39822 6.44284 6.76887 6.82997 7.06917 7.33198 7.60825 7.66670 7.92542 8.29390 8.51785 8.95965 9.08968 9.55125 11.04652 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041527 B = 0.003230 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.101782 B = 8665.828052 C = 8945.930241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.178 3.822 9 H 0.085 0.915 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.599 6.599 13 N -0.740 5.740 14 C 0.141 3.859 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.391 0.609 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 0.952 22.894 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.172 4.172 8 C 0.072 3.928 9 H 0.103 0.897 10 N -0.404 5.404 11 C 0.398 3.602 12 O -0.478 6.478 13 N -0.394 5.394 14 C 0.018 3.982 15 C -0.024 4.024 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.226 0.774 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.030 -0.016 22.680 23.468 hybrid contribution -0.384 0.538 -0.961 1.166 sum 5.647 0.521 21.719 22.447 Atomic orbital electron populations 1.21852 0.94070 1.02152 1.01767 1.20793 0.95840 0.95860 0.94714 1.21996 1.01701 0.95048 1.01612 1.21560 0.95601 1.00585 0.96553 1.21616 0.95575 1.00952 0.97859 1.21489 1.00197 0.99638 0.94122 1.22011 0.95754 1.00994 0.98418 1.20704 0.93003 0.96769 0.82318 0.89669 1.45279 1.72531 1.13454 1.09090 1.16090 0.78515 0.85203 0.80383 1.90874 1.57600 1.14560 1.84734 1.45539 1.70027 1.13835 1.09982 1.21561 1.00294 0.95552 0.80792 1.19322 0.96534 0.94624 0.91969 1.21064 1.44145 0.96650 0.94012 0.92229 1.24996 0.95242 0.94912 0.99176 1.69957 1.44624 1.09190 1.29634 0.86514 0.78572 0.79645 0.82828 1.20576 1.21199 1.19709 0.92676 0.92293 0.92537 0.91697 0.92758 0.92503 0.91689 0.91679 0.92110 0.91660 0.91974 0.91816 0.91727 0.91240 0.77414 0.77538 0.92881 0.92884 0.96017 0.96011 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.32 37.16 0.31 -0.95 16 2 C -0.07 -0.62 0.56 -154.51 -0.09 -0.71 16 3 C -0.15 -1.12 7.61 37.16 0.28 -0.83 16 4 C -0.11 -0.81 4.73 -26.73 -0.13 -0.93 16 5 C -0.12 -0.91 5.65 -26.73 -0.15 -1.06 16 6 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 7 C -0.13 -1.48 5.22 -26.71 -0.14 -1.62 16 8 C 0.18 2.07 1.59 -67.91 -0.11 1.96 16 9 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 10 N -0.75 -9.73 4.31 -58.65 -0.25 -9.98 16 11 C 0.70 12.47 8.53 -86.91 -0.74 11.73 16 12 O -0.60 -13.08 16.01 5.29 0.08 -13.00 16 13 N -0.74 -13.43 5.56 -65.22 -0.36 -13.79 16 14 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 16 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 28 H 0.05 0.41 6.51 -51.93 -0.34 0.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.39 4.18 6.67 -40.82 -0.27 3.91 16 39 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -31.74 339.66 -8.88 -40.63 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.69 Total: 3.82 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.50 Total: -3.74 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.12 Total: -49.39 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.74 -8.88 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408182055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.722 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds