Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 C 1.53002 * 109.46925 * 119.99621 * 2 1 3 5 5 C 1.52997 * 109.47415 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 300.00027 * 5 4 2 7 7 C 1.52999 * 109.46626 * 59.99702 * 6 5 4 8 8 C 1.52996 * 109.47577 * 239.99595 * 2 1 3 9 9 H 1.09000 * 109.47054 * 300.00355 * 8 2 1 10 10 N 1.46500 * 109.46993 * 60.00300 * 8 2 1 11 11 C 1.34773 * 119.99955 * 205.00166 * 10 8 2 12 12 O 1.21581 * 120.00224 * 359.97438 * 11 10 8 13 13 N 1.34784 * 119.99713 * 180.02562 * 11 10 8 14 14 C 1.46507 * 119.99409 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46323 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.46560 * 180.02562 * 15 14 13 17 17 H 1.07989 * 120.00299 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00377 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47219 * 90.00106 * 20 18 16 22 22 H 1.48506 * 109.47620 * 209.99977 * 20 18 16 23 23 H 1.48500 * 109.47145 * 330.00342 * 20 18 16 24 24 H 1.08992 * 109.47458 * 300.00366 * 1 2 3 25 25 H 1.09001 * 109.46885 * 60.00386 * 1 2 3 26 26 H 1.08999 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47502 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47533 * 299.99827 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99456 * 3 2 1 30 30 H 1.09000 * 109.46986 * 60.00086 * 4 2 1 31 31 H 1.09001 * 109.47601 * 300.00809 * 4 2 1 32 32 H 1.09001 * 109.46922 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47140 * 59.99976 * 5 4 2 34 34 H 1.08993 * 109.46955 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47050 * 300.00004 * 6 5 4 36 36 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 37 37 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 38 38 H 0.97001 * 119.99882 * 25.00048 * 10 8 2 39 39 H 0.96988 * 120.00163 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.47222 * 299.99429 * 14 13 11 41 41 H 1.08995 * 109.47136 * 60.00266 * 14 13 11 42 42 H 1.08999 * 109.47460 * 299.99585 * 15 14 13 43 43 H 1.08997 * 109.47789 * 60.00260 * 15 14 13 44 44 H 0.96997 * 120.00484 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2498 6 6 4.0805 -1.4417 0.0005 7 6 3.5705 -0.7205 -1.2487 8 6 2.0401 -0.7213 -1.2491 9 1 1.6767 -1.7490 -1.2491 10 7 1.5518 -0.0307 -2.4454 11 6 1.4232 -0.7031 -3.6063 12 8 1.7127 -1.8827 -3.6609 13 7 0.9745 -0.0676 -4.7069 14 6 0.8352 -0.7985 -5.9690 15 6 0.3108 0.1478 -7.0509 16 6 0.1669 -0.6041 -8.3491 17 1 0.4241 -1.6518 -8.3976 18 6 -0.2932 0.0457 -9.4747 19 7 -0.6070 1.3215 -9.4155 20 14 -0.4710 -0.8860 -11.0839 21 1 -1.8328 -1.4721 -11.1688 22 1 -0.2613 0.0456 -12.2212 23 1 0.5399 -1.9724 -11.1411 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7488 1.2493 31 1 1.6765 -0.2074 2.1393 32 1 3.9331 -1.2349 2.1396 33 1 3.9329 0.3071 1.2499 34 1 5.1704 -1.4417 0.0011 35 1 3.7175 -2.4695 0.0004 36 1 3.9335 0.3073 -1.2485 37 1 3.9339 -1.2344 -2.1386 38 1 1.3211 0.9104 -2.4018 39 1 0.7445 0.8736 -4.6636 40 1 1.8059 -1.1924 -6.2698 41 1 0.1339 -1.6223 -5.8363 42 1 -0.6601 0.5414 -6.7500 43 1 1.0116 0.9719 -7.1838 44 1 -0.9311 1.7786 -10.2073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408182055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = -88.448465 kcal Electronic energy + Delta-G solvation = -21075.370537 eV Core-core repulsion = 18025.238628 eV Total energy + Delta-G solvation = -3050.131909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58010 -39.94962 -36.59852 -35.21670 -34.74988 -34.03295 -31.70826 -30.14321 -28.23220 -27.27080 -26.46397 -23.82771 -22.78471 -22.03714 -21.69425 -19.97495 -18.92947 -18.42287 -17.37031 -16.61631 -16.50318 -16.14028 -15.71703 -15.50687 -15.35346 -14.95233 -14.78133 -14.30922 -14.27807 -13.89863 -13.77483 -13.21160 -12.96444 -12.91192 -12.80118 -12.52907 -12.52096 -12.33564 -12.22756 -12.08112 -11.83490 -11.66383 -11.51814 -11.30989 -11.17842 -11.07382 -10.95037 -10.60374 -10.23915 -9.66694 -8.24094 -6.34432 1.41755 1.42431 1.53911 1.80052 2.20026 2.41518 3.10603 3.38660 3.61014 3.74110 3.90064 4.13089 4.26133 4.37548 4.42918 4.44653 4.50383 4.51798 4.56320 4.75931 4.81994 4.85860 4.86244 4.96980 5.06844 5.10363 5.11533 5.18886 5.22936 5.27822 5.32178 5.38735 5.42831 5.46664 5.52580 5.59273 5.62403 5.69151 5.79391 6.08442 6.17486 6.78607 7.15943 7.34916 7.64024 8.87872 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041527 B = 0.003230 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.101782 B = 8665.828052 C = 8945.930241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.129 4.129 8 C 0.174 3.826 9 H 0.056 0.944 10 N -0.726 5.726 11 C 0.697 3.303 12 O -0.640 6.640 13 N -0.735 5.735 14 C 0.162 3.838 15 C 0.025 3.975 16 C -0.547 4.547 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.267 1.267 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.406 0.594 39 H 0.406 0.594 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 1.729 24.267 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.168 4.168 8 C 0.069 3.931 9 H 0.074 0.926 10 N -0.382 5.382 11 C 0.397 3.603 12 O -0.523 6.523 13 N -0.390 5.390 14 C 0.037 3.963 15 C -0.012 4.012 16 C -0.586 4.586 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.244 0.756 39 H 0.241 0.759 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.271 0.807 24.103 24.918 hybrid contribution -0.454 0.307 -1.335 1.443 sum 5.817 1.114 22.768 23.526 Atomic orbital electron populations 1.21861 0.94161 1.01509 1.02325 1.20759 0.95686 0.96581 0.93383 1.22006 1.01930 0.93865 1.02484 1.21581 0.95870 1.00263 0.96493 1.21598 0.95211 1.01457 0.97184 1.21487 1.00748 0.99026 0.94018 1.21956 0.95116 1.01570 0.98111 1.20869 0.93535 0.95710 0.82939 0.92607 1.45141 1.71137 1.14006 1.07937 1.16208 0.78152 0.84753 0.81193 1.90847 1.59329 1.16587 1.85494 1.45228 1.70360 1.14320 1.09060 1.21044 0.99005 0.94630 0.81606 1.19118 0.95484 0.94423 0.92221 1.21467 1.44587 0.96980 0.95531 0.92375 1.25868 0.94654 0.95816 1.02802 1.70056 1.45088 1.10591 1.30853 0.85441 0.78836 0.78433 0.78311 1.19734 1.20423 1.19103 0.90682 0.93157 0.93823 0.91348 0.92817 0.90770 0.92482 0.89673 0.90654 0.90538 0.91067 0.92916 0.90382 0.94774 0.75636 0.75923 0.94058 0.94031 0.97310 0.97307 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.32 71.98 0.60 -1.71 16 2 C -0.06 -0.99 0.56 -52.18 -0.03 -1.02 16 3 C -0.15 -1.79 7.61 71.98 0.55 -1.24 16 4 C -0.10 -1.35 4.73 30.59 0.14 -1.21 16 5 C -0.12 -1.43 5.65 30.60 0.17 -1.26 16 6 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 7 C -0.13 -2.83 5.22 30.61 0.16 -2.67 16 8 C 0.17 4.04 1.59 45.01 0.07 4.11 16 9 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 10 N -0.73 -18.75 4.31 -457.75 -1.97 -20.73 16 11 C 0.70 25.33 8.53 179.05 1.53 26.86 16 12 O -0.64 -28.97 16.01 -3.97 -0.06 -29.03 16 13 N -0.73 -26.98 5.56 -478.53 -2.66 -29.64 16 14 C 0.16 7.29 5.61 86.38 0.48 7.77 16 15 C 0.03 1.29 5.09 29.85 0.15 1.44 16 16 C -0.55 -31.14 9.11 25.60 0.23 -30.90 16 17 H 0.06 3.25 7.74 -2.92 -0.02 3.22 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 20 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 0.90 7.45 -2.39 -0.02 0.88 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.81 4.81 -2.39 -0.01 0.80 16 28 H 0.05 0.67 6.51 -2.39 -0.02 0.65 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.80 6.43 -2.39 -0.02 0.79 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.49 6.43 -2.39 -0.02 1.48 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.41 8.19 6.67 -92.71 -0.62 7.57 16 39 H 0.41 12.62 8.49 -92.72 -0.79 11.83 16 40 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -69.04 339.66 1.90 -67.14 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.42 Total: 21.29 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.71 Total: -0.72 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -4.35 Total: -104.80 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.06 Total: -29.03 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.04 1.90 -67.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408182055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.308 kcal (2) G-P(sol) polarization free energy of solvation -69.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds