Wall clock time and date at job start Mon Mar 30 2020 01:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.63086 * 2 1 4 4 N 1.46493 * 109.46981 * 300.00295 * 3 2 1 5 5 C 1.34782 * 119.99774 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00074 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00021 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99833 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46718 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00293 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99727 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00544 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46465 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47229 * 119.99678 * 13 11 9 16 16 H 1.48498 * 109.47118 * 239.99993 * 13 11 9 17 17 C 1.50475 * 109.62886 * 239.61337 * 2 1 3 18 18 C 1.54262 * 112.38890 * 334.12912 * 17 2 1 19 19 C 1.54064 * 112.95041 * 318.57798 * 18 17 2 20 20 C 1.50480 * 112.49554 * 318.16991 * 19 18 17 21 21 C 1.54241 * 108.52524 * 94.14840 * 20 19 18 22 22 C 1.45545 * 112.40643 * 280.01904 * 21 20 19 23 23 H 1.08998 * 109.46873 * 98.81402 * 1 2 3 24 24 H 1.09002 * 109.46791 * 338.80959 * 1 2 3 25 25 H 1.09000 * 109.47078 * 218.81503 * 1 2 3 26 26 H 1.09001 * 109.46901 * 59.99976 * 3 2 1 27 27 H 1.08997 * 109.47514 * 179.97438 * 3 2 1 28 28 H 0.97003 * 120.00375 * 359.97438 * 4 3 2 29 29 H 0.96999 * 119.99597 * 0.02562 * 7 5 4 30 30 H 1.08997 * 109.47746 * 300.00071 * 8 7 5 31 31 H 1.08998 * 109.47381 * 60.00703 * 8 7 5 32 32 H 0.96997 * 120.00732 * 180.02562 * 12 11 9 33 33 H 1.08996 * 108.87799 * 95.22269 * 17 2 1 34 34 H 1.09000 * 108.87875 * 213.66179 * 17 2 1 35 35 H 1.08998 * 108.83771 * 197.61182 * 18 17 2 36 36 H 1.09007 * 108.56540 * 79.35319 * 18 17 2 37 37 H 1.08996 * 108.88120 * 197.39369 * 19 18 17 38 38 H 1.09004 * 108.87609 * 78.94397 * 19 18 17 39 39 H 1.08999 * 109.62345 * 334.43836 * 20 19 18 40 40 H 1.08998 * 109.62964 * 213.85935 * 20 19 18 41 41 H 1.08996 * 108.89860 * 159.26106 * 21 20 19 42 42 H 1.09000 * 108.89276 * 40.76352 * 21 20 19 43 43 H 1.09001 * 108.88858 * 301.18335 * 22 21 20 44 44 H 1.08997 * 108.89347 * 182.68747 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 1.5575 2.1330 -1.1961 5 6 1.8863 3.4226 -1.4091 6 8 2.5870 4.0116 -0.6088 7 7 1.4392 4.0591 -2.5098 8 6 1.7961 5.4610 -2.7410 9 6 1.1738 5.9316 -4.0303 10 1 0.5730 5.2541 -4.6189 11 6 1.3725 7.2269 -4.4591 12 7 2.1053 8.0515 -3.7433 13 14 0.6018 7.8102 -6.0577 14 1 -0.1683 6.6981 -6.6705 15 1 -0.3088 8.9501 -5.7812 16 1 1.6703 8.2457 -6.9924 17 6 2.0355 -0.7169 -1.2226 18 6 1.0240 -1.7518 -1.7571 19 6 0.3421 -2.5596 -0.6364 20 6 1.3050 -2.9714 0.4442 21 6 1.2597 -1.9169 1.5689 22 6 2.0481 -0.7349 1.2532 23 1 -0.3633 -0.1575 -1.0155 24 1 -0.3633 0.9582 0.3715 25 1 -0.3633 -0.8007 0.6441 26 1 1.6821 1.9559 0.8900 27 1 3.1340 1.4381 0.0005 28 1 0.9988 1.6631 -1.8348 29 1 0.8805 3.5891 -3.1484 30 1 1.4273 6.0707 -1.9162 31 1 2.8802 5.5541 -2.8052 32 1 2.2448 8.9629 -4.0447 33 1 2.2423 0.0170 -2.0015 34 1 2.9625 -1.2322 -0.9712 35 1 1.5443 -2.4420 -2.4212 36 1 0.2582 -1.2261 -2.3275 37 1 -0.1061 -3.4541 -1.0689 38 1 -0.4464 -1.9514 -0.1930 39 1 2.3135 -3.0266 0.0343 40 1 1.0148 -3.9438 0.8421 41 1 1.6437 -2.3626 2.4864 42 1 0.2242 -1.6175 1.7305 43 1 3.0822 -1.0353 1.0839 44 1 2.0153 -0.0517 2.1018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408366184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:15 Heat of formation + Delta-G solvation = -37.786968 kcal Electronic energy + Delta-G solvation = -21213.498334 eV Core-core repulsion = 18165.563272 eV Total energy + Delta-G solvation = -3047.935062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69093 -38.85004 -35.10098 -33.99099 -32.83674 -32.42924 -31.78543 -28.30849 -27.50982 -26.00385 -24.74410 -23.13049 -22.07093 -20.17990 -19.92575 -18.51506 -17.89365 -16.35237 -15.92257 -15.62033 -15.47063 -15.06474 -14.79564 -14.56110 -14.08668 -13.59677 -13.28175 -13.23375 -12.97036 -12.74137 -12.46725 -12.08815 -11.92943 -11.76273 -11.62995 -11.35929 -10.96266 -10.88841 -10.88325 -10.77892 -10.55563 -10.47222 -10.31569 -10.27214 -9.85858 -9.33711 -9.31100 -8.71593 -8.58848 -7.68733 -6.12190 -4.18450 3.25995 3.32245 3.35451 3.49201 4.04248 4.35041 4.35899 4.44307 4.58332 4.73547 4.90636 4.96785 5.07061 5.12425 5.14116 5.23863 5.24001 5.36414 5.50643 5.55726 5.69004 5.76108 5.80178 5.85956 5.88269 5.96273 5.97827 6.00560 6.01743 6.11972 6.17134 6.23188 6.27659 6.46092 6.98412 7.19244 7.57783 7.61306 7.62198 7.96612 8.09969 8.81444 9.01544 9.39602 9.54146 10.98158 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037621 B = 0.003417 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.085187 B = 8191.239909 C = 8671.410002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.064 4.064 3 C 0.153 3.847 4 N -0.754 5.754 5 C 0.692 3.308 6 O -0.603 6.603 7 N -0.731 5.731 8 C 0.267 3.733 9 C -0.540 4.540 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.106 4.106 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.390 0.610 29 H 0.385 0.615 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 -23.100 7.048 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.065 4.065 3 C 0.028 3.972 4 N -0.412 5.412 5 C 0.391 3.609 6 O -0.482 6.482 7 N -0.383 5.383 8 C 0.146 3.854 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.178 4.178 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.144 4.144 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.224 0.776 29 H 0.217 0.783 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.182 -22.297 7.784 23.830 hybrid contribution -0.792 0.006 -1.492 1.689 sum -3.974 -22.291 6.292 23.500 Atomic orbital electron populations 1.22684 0.94463 1.02376 1.02830 1.20473 0.96250 0.93976 0.95771 1.21136 0.98603 0.89796 0.87637 1.45167 1.57806 1.11634 1.26614 1.16174 0.80897 0.80853 0.82957 1.90866 1.43262 1.66565 1.47521 1.45702 1.54496 1.15648 1.22452 1.18961 0.96246 0.74056 0.96180 1.21275 1.32794 0.97255 1.06529 0.91934 1.24950 0.95124 0.96412 0.97600 1.69989 1.38008 1.06166 1.38164 0.86366 0.78973 0.78738 0.82837 1.19676 1.20832 1.20840 1.21538 0.98680 0.97693 0.97316 1.21921 0.98363 0.97211 0.97563 1.21843 0.99547 0.99863 0.96541 1.21311 1.00254 0.97823 0.95909 1.20581 1.01241 0.95836 0.98336 1.20456 0.99824 0.96825 0.97269 0.91790 0.92783 0.90178 0.92073 0.92225 0.77618 0.78286 0.95814 0.95805 0.92552 0.91418 0.92064 0.92600 0.92125 0.93030 0.89817 0.91787 0.92400 0.92384 0.91256 0.91908 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 6.61 37.16 0.25 -1.24 16 2 C -0.06 -0.61 0.53 -155.12 -0.08 -0.69 16 3 C 0.15 2.05 4.18 -4.05 -0.02 2.04 16 4 N -0.75 -11.55 4.66 -65.23 -0.30 -11.86 16 5 C 0.69 14.73 8.57 -86.91 -0.74 13.99 16 6 O -0.60 -15.59 16.34 5.29 0.09 -15.51 16 7 N -0.73 -16.09 5.55 -66.42 -0.37 -16.46 16 8 C 0.27 7.31 5.43 -5.20 -0.03 7.28 16 9 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 10 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 13 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.11 -1.05 4.51 -27.33 -0.12 -1.18 16 18 C -0.11 -0.89 5.11 -25.52 -0.13 -1.02 16 19 C -0.14 -1.00 5.24 -27.43 -0.14 -1.15 16 20 C -0.12 -0.80 5.61 -27.34 -0.15 -0.96 16 21 C -0.12 -0.88 5.18 -29.60 -0.15 -1.03 16 22 C -0.11 -0.89 4.46 -29.60 -0.13 -1.02 16 23 H 0.06 0.54 5.55 -51.93 -0.29 0.25 16 24 H 0.05 0.56 7.72 -51.93 -0.40 0.16 16 25 H 0.08 0.61 3.02 -51.93 -0.16 0.46 16 26 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.39 4.93 7.27 -40.82 -0.30 4.63 16 29 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 0.71 6.54 -51.93 -0.34 0.37 16 34 H 0.06 0.56 6.65 -51.93 -0.35 0.21 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.47 6.94 -51.93 -0.36 0.11 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.59 4.09 -51.93 -0.21 0.38 16 39 H 0.06 0.48 6.99 -51.93 -0.36 0.11 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.49 5.53 -51.93 -0.29 0.20 16 43 H 0.06 0.53 7.48 -51.93 -0.39 0.14 16 44 H 0.06 0.55 7.97 -51.93 -0.41 0.14 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -32.55 325.94 -8.94 -41.50 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.11 Total: 5.68 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.88 Total: 1.42 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.06 Total: -54.09 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.09 Total: -15.51 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.55 -8.94 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408366184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.710 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds