Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.63086 * 2 1 4 4 N 1.46493 * 109.46981 * 300.00295 * 3 2 1 5 5 C 1.34782 * 119.99774 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00074 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00021 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99833 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46718 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00293 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99727 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00544 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46465 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47229 * 119.99678 * 13 11 9 16 16 H 1.48498 * 109.47118 * 239.99993 * 13 11 9 17 17 C 1.50475 * 109.62886 * 239.61337 * 2 1 3 18 18 C 1.54262 * 112.38890 * 334.12912 * 17 2 1 19 19 C 1.54064 * 112.95041 * 318.57798 * 18 17 2 20 20 C 1.50480 * 112.49554 * 318.16991 * 19 18 17 21 21 C 1.54241 * 108.52524 * 94.14840 * 20 19 18 22 22 C 1.45545 * 112.40643 * 280.01904 * 21 20 19 23 23 H 1.08998 * 109.46873 * 98.81402 * 1 2 3 24 24 H 1.09002 * 109.46791 * 338.80959 * 1 2 3 25 25 H 1.09000 * 109.47078 * 218.81503 * 1 2 3 26 26 H 1.09001 * 109.46901 * 59.99976 * 3 2 1 27 27 H 1.08997 * 109.47514 * 179.97438 * 3 2 1 28 28 H 0.97003 * 120.00375 * 359.97438 * 4 3 2 29 29 H 0.96999 * 119.99597 * 0.02562 * 7 5 4 30 30 H 1.08997 * 109.47746 * 300.00071 * 8 7 5 31 31 H 1.08998 * 109.47381 * 60.00703 * 8 7 5 32 32 H 0.96997 * 120.00732 * 180.02562 * 12 11 9 33 33 H 1.08996 * 108.87799 * 95.22269 * 17 2 1 34 34 H 1.09000 * 108.87875 * 213.66179 * 17 2 1 35 35 H 1.08998 * 108.83771 * 197.61182 * 18 17 2 36 36 H 1.09007 * 108.56540 * 79.35319 * 18 17 2 37 37 H 1.08996 * 108.88120 * 197.39369 * 19 18 17 38 38 H 1.09004 * 108.87609 * 78.94397 * 19 18 17 39 39 H 1.08999 * 109.62345 * 334.43836 * 20 19 18 40 40 H 1.08998 * 109.62964 * 213.85935 * 20 19 18 41 41 H 1.08996 * 108.89860 * 159.26106 * 21 20 19 42 42 H 1.09000 * 108.89276 * 40.76352 * 21 20 19 43 43 H 1.09001 * 108.88858 * 301.18335 * 22 21 20 44 44 H 1.08997 * 108.89347 * 182.68747 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 1.5575 2.1330 -1.1961 5 6 1.8863 3.4226 -1.4091 6 8 2.5870 4.0116 -0.6088 7 7 1.4392 4.0591 -2.5098 8 6 1.7961 5.4610 -2.7410 9 6 1.1738 5.9316 -4.0303 10 1 0.5730 5.2541 -4.6189 11 6 1.3725 7.2269 -4.4591 12 7 2.1053 8.0515 -3.7433 13 14 0.6018 7.8102 -6.0577 14 1 -0.1683 6.6981 -6.6705 15 1 -0.3088 8.9501 -5.7812 16 1 1.6703 8.2457 -6.9924 17 6 2.0355 -0.7169 -1.2226 18 6 1.0240 -1.7518 -1.7571 19 6 0.3421 -2.5596 -0.6364 20 6 1.3050 -2.9714 0.4442 21 6 1.2597 -1.9169 1.5689 22 6 2.0481 -0.7349 1.2532 23 1 -0.3633 -0.1575 -1.0155 24 1 -0.3633 0.9582 0.3715 25 1 -0.3633 -0.8007 0.6441 26 1 1.6821 1.9559 0.8900 27 1 3.1340 1.4381 0.0005 28 1 0.9988 1.6631 -1.8348 29 1 0.8805 3.5891 -3.1484 30 1 1.4273 6.0707 -1.9162 31 1 2.8802 5.5541 -2.8052 32 1 2.2448 8.9629 -4.0447 33 1 2.2423 0.0170 -2.0015 34 1 2.9625 -1.2322 -0.9712 35 1 1.5443 -2.4420 -2.4212 36 1 0.2582 -1.2261 -2.3275 37 1 -0.1061 -3.4541 -1.0689 38 1 -0.4464 -1.9514 -0.1930 39 1 2.3135 -3.0266 0.0343 40 1 1.0148 -3.9438 0.8421 41 1 1.6437 -2.3626 2.4864 42 1 0.2242 -1.6175 1.7305 43 1 3.0822 -1.0353 1.0839 44 1 2.0153 -0.0517 2.1018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408366184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = -59.571712 kcal Electronic energy + Delta-G solvation = -21214.442992 eV Core-core repulsion = 18165.563272 eV Total energy + Delta-G solvation = -3048.879719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60449 -40.43927 -36.44420 -35.87754 -34.38286 -33.47406 -33.01183 -29.42643 -28.98965 -27.28278 -25.41584 -24.73250 -23.39471 -21.81602 -20.62659 -19.97308 -19.03059 -18.06367 -17.39284 -16.71478 -16.53824 -16.52025 -16.16273 -15.68995 -15.25945 -14.97647 -14.79955 -14.38452 -14.04988 -13.88913 -13.77362 -13.51265 -13.19164 -12.86618 -12.77224 -12.68867 -12.42996 -12.21141 -12.16828 -11.67554 -11.44712 -11.43898 -11.28167 -11.20166 -11.08120 -11.03628 -10.81200 -10.51384 -10.24385 -9.55859 -8.27836 -6.44347 1.43862 1.45616 1.58846 1.92529 2.26103 2.40373 3.07119 3.53571 3.64229 3.73843 3.79485 4.05868 4.26214 4.31729 4.37942 4.48709 4.51106 4.59067 4.73619 4.78161 4.85397 4.92636 5.08138 5.12391 5.14913 5.18049 5.22788 5.27566 5.29041 5.39448 5.42765 5.43809 5.47274 5.50102 5.52049 5.54683 5.64277 5.70451 5.81136 5.85944 6.27980 6.67816 7.25080 7.32798 7.74112 8.84874 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037621 B = 0.003417 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.085187 B = 8191.239909 C = 8671.410002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.053 4.053 3 C 0.151 3.849 4 N -0.726 5.726 5 C 0.689 3.311 6 O -0.652 6.652 7 N -0.724 5.724 8 C 0.285 3.715 9 C -0.553 4.553 10 H 0.084 0.916 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.987 3.013 14 H -0.253 1.253 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.140 4.140 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.104 4.104 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.408 0.592 29 H 0.404 0.596 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.269 0.731 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 -25.276 5.783 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.053 4.053 3 C 0.026 3.974 4 N -0.384 5.384 5 C 0.389 3.611 6 O -0.535 6.535 7 N -0.377 5.377 8 C 0.162 3.838 9 C -0.591 4.591 10 H 0.102 0.898 11 C -0.197 4.197 12 N -0.570 5.570 13 Si 0.810 3.190 14 H -0.176 1.176 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.177 4.177 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.142 4.142 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.245 0.755 29 H 0.239 0.761 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.966 -24.567 6.511 25.895 hybrid contribution -0.194 0.634 -1.013 1.210 sum -5.160 -23.933 5.498 25.093 Atomic orbital electron populations 1.22717 0.93503 1.02255 1.03745 1.20388 0.96871 0.91183 0.96901 1.21323 0.97949 0.92004 0.86086 1.44922 1.56733 1.09396 1.27341 1.16362 0.80367 0.82297 0.82112 1.90832 1.45409 1.68201 1.49037 1.45290 1.55018 1.14026 1.23392 1.18402 0.93692 0.76369 0.95345 1.21631 1.32995 0.98018 1.06486 0.89803 1.26085 0.95360 0.96479 1.01757 1.70151 1.39532 1.06774 1.40558 0.85077 0.77979 0.78510 0.77410 1.17596 1.20424 1.20458 1.21511 0.99357 0.97727 0.96469 1.21903 0.98051 0.96911 0.97943 1.21839 0.99476 1.00076 0.96288 1.21309 0.99984 0.98185 0.95706 1.20562 1.01183 0.95207 0.98873 1.20456 1.00125 0.97253 0.96317 0.90944 0.94289 0.88416 0.93256 0.93541 0.75537 0.76092 0.99756 0.99770 0.92239 0.92842 0.91986 0.92287 0.91776 0.92258 0.89553 0.92289 0.91384 0.91524 0.90762 0.91958 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 6.61 71.98 0.48 -2.15 16 2 C -0.05 -0.95 0.53 -52.58 -0.03 -0.97 16 3 C 0.15 4.06 4.18 86.38 0.36 4.42 16 4 N -0.73 -22.12 4.66 -478.54 -2.23 -24.35 16 5 C 0.69 30.04 8.57 179.05 1.53 31.57 16 6 O -0.65 -35.22 16.34 -3.99 -0.07 -35.28 16 7 N -0.72 -32.32 5.55 -482.30 -2.68 -35.00 16 8 C 0.29 16.25 5.43 85.64 0.46 16.72 16 9 C -0.55 -30.69 9.28 25.60 0.24 -30.45 16 10 H 0.08 4.20 7.60 -2.91 -0.02 4.17 16 11 C 0.00 0.15 5.46 84.65 0.46 0.61 16 12 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 13 Si 0.99 42.74 29.54 68.60 2.03 44.77 16 14 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 C -0.11 -1.90 4.51 30.20 0.14 -1.76 16 18 C -0.11 -1.47 5.11 31.38 0.16 -1.31 16 19 C -0.14 -1.58 5.24 30.14 0.16 -1.42 16 20 C -0.11 -1.28 5.61 30.20 0.17 -1.11 16 21 C -0.12 -1.44 5.18 28.74 0.15 -1.30 16 22 C -0.10 -1.60 4.46 28.74 0.13 -1.47 16 23 H 0.07 1.03 5.55 -2.39 -0.01 1.02 16 24 H 0.04 0.75 7.72 -2.39 -0.02 0.73 16 25 H 0.10 1.23 3.02 -2.39 -0.01 1.22 16 26 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.41 9.76 7.27 -92.71 -0.67 9.08 16 29 H 0.40 14.86 8.34 -92.71 -0.77 14.08 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.05 1.05 6.54 -2.39 -0.02 1.04 16 34 H 0.06 1.04 6.65 -2.39 -0.02 1.03 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.82 6.94 -2.38 -0.02 0.81 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.09 0.93 4.09 -2.39 -0.01 0.92 16 39 H 0.06 0.74 6.99 -2.39 -0.02 0.72 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.83 5.53 -2.39 -0.01 0.82 16 43 H 0.06 0.98 7.48 -2.39 -0.02 0.96 16 44 H 0.06 0.98 7.97 -2.39 -0.02 0.96 16 Total: -1.00 -72.69 325.94 1.31 -71.38 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.44 Total: 23.89 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 4.41 Total: 11.36 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.62 Total: -116.11 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.07 Total: -35.28 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -72.69 1.31 -71.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408366184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.804 kcal (2) G-P(sol) polarization free energy of solvation -72.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds