Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.52995 * 109.47577 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46737 * 294.99984 * 7 6 5 9 9 C 1.34777 * 120.00071 * 179.97438 * 8 7 6 10 10 O 1.21592 * 119.99865 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00315 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00573 * 179.97438 * 11 9 8 13 13 C 1.50689 * 109.47749 * 180.02562 * 12 11 9 14 14 H 1.08012 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00563 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00166 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99583 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46868 * 90.00179 * 17 15 13 19 19 H 1.48504 * 109.46993 * 209.99793 * 17 15 13 20 20 H 1.48498 * 109.47348 * 330.00038 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 1.08998 * 109.47220 * 54.99171 * 7 6 5 35 35 H 1.08991 * 109.47712 * 174.99863 * 7 6 5 36 36 H 0.97003 * 120.00242 * 359.97438 * 8 7 6 37 37 H 0.97005 * 119.99466 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.47340 * 300.01017 * 12 11 9 39 39 H 1.09004 * 109.46687 * 60.00024 * 12 11 9 40 40 H 0.97000 * 119.99995 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.6105 -1.4405 -0.0002 8 7 6.0994 -2.2324 -1.1317 9 6 7.4246 -2.3724 -1.3337 10 8 8.2143 -1.8418 -0.5766 11 7 7.8744 -3.1013 -2.3743 12 6 9.3147 -3.2530 -2.5943 13 6 9.5496 -4.1069 -3.8135 14 1 8.7098 -4.4972 -4.3694 15 6 10.8365 -4.3899 -4.2196 16 7 11.0414 -5.1355 -5.2834 17 14 12.2889 -3.7142 -3.2586 18 1 12.6753 -4.6816 -2.2003 19 1 13.4355 -3.5025 -4.1783 20 1 11.9106 -2.4214 -2.6335 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 5.9732 -0.4166 -0.0899 35 1 5.9742 -1.8745 0.9311 36 1 5.4694 -2.6561 -1.7354 37 1 7.2442 -3.5249 -2.9780 38 1 9.7645 -2.2718 -2.7461 39 1 9.7669 -3.7292 -1.7242 40 1 11.9467 -5.3343 -5.5693 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408367758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = -69.681215 kcal Electronic energy + Delta-G solvation = -20692.790753 eV Core-core repulsion = 17643.472653 eV Total energy + Delta-G solvation = -3049.318100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11130 -39.04916 -35.55185 -34.13637 -32.78179 -32.14420 -31.03709 -28.51521 -27.61515 -27.13508 -24.01569 -23.03382 -21.90511 -20.71196 -20.20229 -18.71471 -18.09786 -16.34386 -15.89706 -15.61826 -15.09848 -15.07621 -14.43305 -14.30195 -14.19941 -13.90430 -13.52263 -13.23024 -13.05032 -12.64543 -12.53454 -12.32424 -12.17827 -12.06987 -11.96231 -11.57521 -11.49154 -11.20632 -11.03895 -10.94866 -10.72439 -10.37758 -10.30317 -10.15009 -9.93196 -9.54008 -9.41622 -8.79328 -8.70229 -7.95148 -6.17925 -4.19481 3.29373 3.33299 3.39878 3.46529 3.87827 4.34400 4.36291 4.37441 4.46117 4.76244 4.85539 4.93042 5.06206 5.13435 5.14663 5.17797 5.29224 5.29993 5.38021 5.40186 5.53626 5.58644 5.64992 5.69672 5.76241 5.79340 5.81664 5.90474 5.93062 5.96579 6.08838 6.15035 6.20672 6.34484 6.79155 6.86201 7.16106 7.29693 7.46113 7.63479 8.32420 8.73818 8.86398 9.27358 9.44523 10.94106 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044645 B = 0.003073 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.021997 B = 9110.035330 C = 9422.694160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.097 4.097 7 C 0.146 3.854 8 N -0.754 5.754 9 C 0.694 3.306 10 O -0.606 6.606 11 N -0.724 5.724 12 C 0.238 3.762 13 C -0.541 4.541 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.260 1.260 21 C -0.114 4.114 22 C -0.106 4.106 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.392 0.608 37 H 0.392 0.608 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.030 9.930 10.920 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.116 4.116 7 C 0.021 3.979 8 N -0.412 5.412 9 C 0.393 3.607 10 O -0.485 6.485 11 N -0.376 5.376 12 C 0.116 3.884 13 C -0.579 4.579 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.152 4.152 22 C -0.143 4.143 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.225 0.775 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.101 10.335 11.490 26.156 hybrid contribution 0.223 -0.198 -0.231 0.377 sum -20.878 10.137 11.259 25.796 Atomic orbital electron populations 1.21869 0.94861 1.01607 1.01556 1.20548 0.94958 0.95651 0.95471 1.21985 1.01762 0.95200 1.01354 1.21594 0.95581 1.00328 0.97019 1.21650 0.95202 1.01186 0.97434 1.21395 0.94139 1.00307 0.95733 1.21119 0.92175 0.95644 0.88984 1.45137 1.05726 1.57718 1.32583 1.16138 0.82006 0.80232 0.82302 1.90858 1.54963 1.53930 1.48769 1.45388 1.10236 1.53445 1.28557 1.19340 0.75701 0.96827 0.96570 1.21104 0.94383 1.32053 1.10384 0.90331 1.24786 0.98803 0.94306 0.94777 1.69883 1.21890 1.37148 1.24246 0.86806 0.82036 0.80712 0.80082 1.19868 1.20963 1.18418 1.21543 0.95452 1.01079 0.97086 1.21571 0.95340 1.00366 0.97066 0.92832 0.92779 0.92772 0.91773 0.92917 0.92979 0.92003 0.92045 0.91385 0.91756 0.90642 0.92089 0.92089 0.77457 0.77535 0.95972 0.96424 0.92307 0.91309 0.91693 0.92033 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.48 37.16 0.31 -0.58 16 2 C -0.07 -0.46 0.77 -154.51 -0.12 -0.58 16 3 C -0.15 -1.03 7.78 37.16 0.29 -0.74 16 4 C -0.11 -0.81 4.73 -26.73 -0.13 -0.94 16 5 C -0.12 -1.01 4.80 -26.73 -0.13 -1.14 16 6 C -0.10 -0.87 2.23 -90.62 -0.20 -1.07 16 7 C 0.15 1.83 5.06 -4.04 -0.02 1.81 16 8 N -0.75 -11.02 5.29 -65.23 -0.34 -11.37 16 9 C 0.69 14.08 8.57 -86.92 -0.74 13.33 16 10 O -0.61 -14.79 16.34 5.28 0.09 -14.70 16 11 N -0.72 -15.31 5.55 -66.42 -0.37 -15.68 16 12 C 0.24 6.07 4.50 -5.20 -0.02 6.04 16 13 C -0.54 -15.12 9.83 -34.45 -0.34 -15.46 16 14 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 16 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 17 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 21 C -0.11 -0.90 4.93 -26.73 -0.13 -1.03 16 22 C -0.11 -0.74 4.73 -26.73 -0.13 -0.87 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.06 0.58 7.18 -51.93 -0.37 0.21 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.39 4.64 7.67 -40.82 -0.31 4.33 16 37 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 38 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 39 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -32.59 338.85 -8.66 -41.24 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.78 Total: 3.44 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.45 Total: 0.88 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.06 Total: -53.13 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.09 Total: -14.70 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.59 -8.66 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408367758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.439 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds