Wall clock time and date at job start Mon Mar 30 2020 01:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47167 * 239.99742 * 3 2 1 5 5 H 1.48493 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46789 * 119.99837 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99344 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46838 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47058 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47109 * 305.00374 * 11 10 9 13 13 N 1.46907 * 109.47314 * 65.00126 * 11 10 9 14 14 C 1.50698 * 109.47522 * 184.99883 * 11 10 9 15 15 O 1.21283 * 120.00472 * 260.00409 * 14 11 10 16 16 N 1.34777 * 119.99538 * 79.99747 * 14 11 10 17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 11 18 18 C 1.54253 * 108.89829 * 276.67294 * 17 16 14 19 19 C 1.50544 * 108.48403 * 159.17776 * 18 17 16 20 20 C 1.54066 * 112.41361 * 94.26749 * 19 18 17 21 21 C 1.54061 * 112.81767 * 318.27696 * 20 19 18 22 22 C 1.50469 * 112.49871 * 318.28431 * 21 20 19 23 23 C 1.45537 * 108.89713 * 153.88309 * 17 16 14 24 24 H 0.96997 * 119.99981 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46735 * 60.00229 * 9 7 2 26 26 H 1.08996 * 109.46869 * 300.00212 * 9 7 2 27 27 H 1.08993 * 109.47302 * 60.00322 * 10 9 7 28 28 H 1.09003 * 109.47055 * 300.00072 * 10 9 7 29 29 H 1.00903 * 110.99748 * 59.99828 * 13 11 10 30 30 H 1.00897 * 111.00361 * 183.95779 * 13 11 10 31 31 H 0.97001 * 120.00485 * 0.02562 * 16 14 11 32 32 H 1.08996 * 108.87571 * 35.27682 * 17 16 14 33 33 H 1.09006 * 109.62607 * 278.97700 * 18 17 16 34 34 H 1.09001 * 109.62467 * 39.55305 * 18 17 16 35 35 H 1.09002 * 108.92960 * 333.51316 * 19 18 17 36 36 H 1.09004 * 108.83895 * 214.96481 * 19 18 17 37 37 H 1.09004 * 108.81441 * 197.41542 * 20 19 18 38 38 H 1.09003 * 108.72734 * 79.07900 * 20 19 18 39 39 H 1.09008 * 108.88087 * 197.50516 * 21 20 19 40 40 H 1.08999 * 108.87564 * 79.06561 * 21 20 19 41 41 H 1.09001 * 109.62487 * 334.44450 * 22 21 20 42 42 H 1.08995 * 109.63182 * 213.86356 * 22 21 20 43 43 H 1.09001 * 108.89399 * 303.44165 * 23 17 16 44 44 H 1.09004 * 108.89357 * 62.02989 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 1 0.7886 -5.0076 0.8396 13 7 0.7282 -5.1177 -1.2575 14 6 2.4551 -6.1299 0.1201 15 8 2.7866 -6.7527 -0.8664 16 7 2.9585 -6.4598 1.3260 17 6 3.9014 -7.5746 1.4460 18 6 3.1068 -8.8939 1.5318 19 6 4.0190 -10.0266 1.1430 20 6 4.6895 -10.6863 2.3632 21 6 5.1673 -9.6612 3.4092 22 6 5.8120 -8.4554 2.7811 23 6 4.7411 -7.3579 2.6148 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 1.3477 -5.1013 -2.0538 30 1 0.1638 -5.9540 -1.2555 31 1 2.6932 -5.9619 2.1151 32 1 4.5325 -7.5998 0.5577 33 1 2.7512 -9.0415 2.5516 34 1 2.2592 -8.8560 0.8474 35 1 4.7940 -9.6444 0.4786 36 1 3.4380 -10.7793 0.6100 37 1 5.5470 -11.2664 2.0222 38 1 3.9740 -11.3610 2.8334 39 1 5.8880 -10.1420 4.0707 40 1 4.3114 -9.3357 4.0005 41 1 6.2163 -8.7233 1.8049 42 1 6.6127 -8.0913 3.4247 43 1 5.2373 -6.3922 2.5188 44 1 4.1111 -7.3438 3.5043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424075024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:22 Heat of formation + Delta-G solvation = -73.754230 kcal Electronic energy + Delta-G solvation = -20946.461626 eV Core-core repulsion = 17896.966907 eV Total energy + Delta-G solvation = -3049.494720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30558 -38.57475 -35.22345 -34.62538 -32.77797 -32.39545 -30.83312 -30.05006 -26.49415 -25.14283 -24.59972 -23.18948 -20.95932 -20.59941 -19.67894 -19.48780 -17.14424 -16.68739 -16.16024 -15.66478 -15.48700 -14.99526 -14.63990 -14.41328 -14.17186 -13.71616 -13.50128 -13.38907 -13.24223 -12.49541 -12.40040 -12.29338 -11.99686 -11.56839 -11.52179 -11.22900 -10.87030 -10.84760 -10.79773 -10.63535 -10.59835 -10.55340 -10.51038 -10.05535 -9.77346 -9.35117 -9.01469 -8.96470 -8.32378 -8.17215 -5.92742 -3.94966 2.83755 3.28754 3.36656 3.41181 3.43678 4.35504 4.50432 4.52936 4.59846 4.86381 4.86729 4.94567 4.99478 5.07492 5.09560 5.25093 5.31860 5.42602 5.49444 5.56360 5.58348 5.70341 5.74783 5.86742 5.88970 5.90341 5.94291 5.95729 6.09602 6.14548 6.21884 6.45117 6.57710 6.68131 7.10823 7.42064 7.66433 7.77184 7.82879 7.97686 8.14565 8.39031 8.49701 9.12948 9.68038 11.18144 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.003521 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.677533 B = 7949.985769 C = 8581.629175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.077 3.923 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.554 6.554 16 N -0.730 5.730 17 C 0.146 3.854 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.131 4.131 24 H 0.260 0.740 25 H 0.035 0.965 26 H 0.013 0.987 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.347 0.653 30 H 0.333 0.667 31 H 0.401 0.599 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 -20.320 7.281 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.038 4.038 12 H 0.114 0.886 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.432 6.432 16 N -0.382 5.382 17 C 0.042 3.958 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.169 4.169 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.235 0.765 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.040 -19.938 6.755 22.534 hybrid contribution 0.903 0.253 0.321 0.991 sum 8.942 -19.685 7.076 22.749 Atomic orbital electron populations 1.69965 1.05949 1.26521 1.50779 1.24994 0.94807 0.99039 0.95482 0.86708 0.79606 0.83424 0.78524 1.20314 1.21336 1.20377 1.21253 0.92861 0.91368 1.50682 0.93055 1.19010 0.93565 0.89821 0.98172 1.21644 0.98821 0.92236 1.00603 1.21836 0.93580 0.93405 0.95021 0.88556 1.58999 1.26956 1.44234 1.03310 1.22707 0.82127 0.85550 0.82674 1.90634 1.60878 1.54523 1.37136 1.46421 1.47013 1.34499 1.10280 1.19878 0.90539 0.85950 0.99469 1.21716 0.98564 0.94030 1.01831 1.21263 0.98890 0.97653 0.97622 1.21932 0.99894 0.97774 0.95858 1.21366 1.00328 0.96075 0.97998 1.21228 0.97304 0.94783 1.01620 1.20786 0.97830 1.00008 0.98255 0.93045 0.94688 0.96904 0.92885 0.92916 0.83872 0.85535 0.76513 0.90060 0.91603 0.91603 0.91895 0.92226 0.92360 0.92408 0.92343 0.91973 0.91346 0.91454 0.91213 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 10 C -0.09 -1.92 4.78 -26.73 -0.13 -2.05 16 11 C 0.08 1.31 3.15 -68.86 -0.22 1.09 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 13 N -0.81 -13.82 8.44 -5.65 -0.05 -13.86 16 14 C 0.48 7.62 6.85 -10.99 -0.08 7.54 16 15 O -0.55 -10.20 15.90 5.55 0.09 -10.12 16 16 N -0.73 -9.10 5.01 -56.62 -0.28 -9.39 16 17 C 0.15 1.62 1.96 -70.79 -0.14 1.48 16 18 C -0.12 -1.26 5.19 -27.30 -0.14 -1.40 16 19 C -0.12 -1.05 5.32 -27.40 -0.15 -1.20 16 20 C -0.12 -0.86 5.85 -25.62 -0.15 -1.01 16 21 C -0.12 -0.85 5.31 -27.44 -0.15 -0.99 16 22 C -0.11 -0.85 5.61 -27.35 -0.15 -1.00 16 23 C -0.13 -1.16 4.61 -29.60 -0.14 -1.30 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.35 6.05 8.58 -39.29 -0.34 5.72 16 30 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 31 H 0.40 4.28 8.57 -40.82 -0.35 3.93 16 32 H 0.08 1.08 6.87 -51.93 -0.36 0.73 16 33 H 0.07 0.61 6.97 -51.93 -0.36 0.25 16 34 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 35 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.06 0.44 6.62 -51.93 -0.34 0.10 16 41 H 0.07 0.56 6.98 -51.93 -0.36 0.19 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.54 7.46 -51.93 -0.39 0.15 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -31.91 342.46 -9.13 -41.03 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.78 Total: 8.48 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.98 Total: -11.79 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.40 Total: -49.57 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.91 -9.13 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424075024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.721 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds