Wall clock time and date at job start Mon Mar 30 2020 01:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47167 * 239.99742 * 3 2 1 5 5 H 1.48493 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46789 * 119.99837 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99344 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46838 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47058 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47109 * 305.00374 * 11 10 9 13 13 N 1.46907 * 109.47314 * 65.00126 * 11 10 9 14 14 C 1.50698 * 109.47522 * 184.99883 * 11 10 9 15 15 O 1.21283 * 120.00472 * 260.00409 * 14 11 10 16 16 N 1.34777 * 119.99538 * 79.99747 * 14 11 10 17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 11 18 18 C 1.54253 * 108.89829 * 276.67294 * 17 16 14 19 19 C 1.50544 * 108.48403 * 159.17776 * 18 17 16 20 20 C 1.54066 * 112.41361 * 94.26749 * 19 18 17 21 21 C 1.54061 * 112.81767 * 318.27696 * 20 19 18 22 22 C 1.50469 * 112.49871 * 318.28431 * 21 20 19 23 23 C 1.45537 * 108.89713 * 153.88309 * 17 16 14 24 24 H 0.96997 * 119.99981 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46735 * 60.00229 * 9 7 2 26 26 H 1.08996 * 109.46869 * 300.00212 * 9 7 2 27 27 H 1.08993 * 109.47302 * 60.00322 * 10 9 7 28 28 H 1.09003 * 109.47055 * 300.00072 * 10 9 7 29 29 H 1.00903 * 110.99748 * 59.99828 * 13 11 10 30 30 H 1.00897 * 111.00361 * 183.95779 * 13 11 10 31 31 H 0.97001 * 120.00485 * 0.02562 * 16 14 11 32 32 H 1.08996 * 108.87571 * 35.27682 * 17 16 14 33 33 H 1.09006 * 109.62607 * 278.97700 * 18 17 16 34 34 H 1.09001 * 109.62467 * 39.55305 * 18 17 16 35 35 H 1.09002 * 108.92960 * 333.51316 * 19 18 17 36 36 H 1.09004 * 108.83895 * 214.96481 * 19 18 17 37 37 H 1.09004 * 108.81441 * 197.41542 * 20 19 18 38 38 H 1.09003 * 108.72734 * 79.07900 * 20 19 18 39 39 H 1.09008 * 108.88087 * 197.50516 * 21 20 19 40 40 H 1.08999 * 108.87564 * 79.06561 * 21 20 19 41 41 H 1.09001 * 109.62487 * 334.44450 * 22 21 20 42 42 H 1.08995 * 109.63182 * 213.86356 * 22 21 20 43 43 H 1.09001 * 108.89399 * 303.44165 * 23 17 16 44 44 H 1.09004 * 108.89357 * 62.02989 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 1 0.7886 -5.0076 0.8396 13 7 0.7282 -5.1177 -1.2575 14 6 2.4551 -6.1299 0.1201 15 8 2.7866 -6.7527 -0.8664 16 7 2.9585 -6.4598 1.3260 17 6 3.9014 -7.5746 1.4460 18 6 3.1068 -8.8939 1.5318 19 6 4.0190 -10.0266 1.1430 20 6 4.6895 -10.6863 2.3632 21 6 5.1673 -9.6612 3.4092 22 6 5.8120 -8.4554 2.7811 23 6 4.7411 -7.3579 2.6148 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 1.3477 -5.1013 -2.0538 30 1 0.1638 -5.9540 -1.2555 31 1 2.6932 -5.9619 2.1151 32 1 4.5325 -7.5998 0.5577 33 1 2.7512 -9.0415 2.5516 34 1 2.2592 -8.8560 0.8474 35 1 4.7940 -9.6444 0.4786 36 1 3.4380 -10.7793 0.6100 37 1 5.5470 -11.2664 2.0222 38 1 3.9740 -11.3610 2.8334 39 1 5.8880 -10.1420 4.0707 40 1 4.3114 -9.3357 4.0005 41 1 6.2163 -8.7233 1.8049 42 1 6.6127 -8.0913 3.4247 43 1 5.2373 -6.3922 2.5188 44 1 4.1111 -7.3438 3.5043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424075024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:21 Heat of formation + Delta-G solvation = -95.594469 kcal Electronic energy + Delta-G solvation = -20947.408690 eV Core-core repulsion = 17896.966907 eV Total energy + Delta-G solvation = -3050.441783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41177 -39.55081 -36.78406 -35.64896 -34.80283 -33.10014 -31.94783 -31.69706 -28.15304 -26.12675 -25.62871 -24.54110 -22.33273 -21.81421 -21.00577 -20.15137 -18.65603 -18.00057 -17.73864 -16.93388 -16.58223 -16.37498 -15.89408 -15.60964 -15.32036 -14.90868 -14.69417 -14.35230 -14.22968 -13.95406 -13.81507 -13.42879 -13.21756 -13.08526 -12.77312 -12.54296 -12.32706 -12.25150 -12.02714 -11.73741 -11.62308 -11.58228 -11.42739 -11.25448 -11.24170 -11.16033 -10.96990 -10.48226 -10.07590 -9.59973 -8.13497 -6.24021 1.41934 1.44861 1.52143 1.54988 2.18857 2.45072 3.19328 3.57327 3.61819 3.80251 3.82230 4.01304 4.11743 4.18578 4.21829 4.30132 4.32812 4.39339 4.45652 4.53711 4.78360 4.81810 4.89843 4.94495 4.98604 5.05004 5.17872 5.23811 5.26510 5.30652 5.32267 5.34604 5.43578 5.54494 5.56415 5.57284 5.84768 5.98828 6.10551 6.30661 6.47533 6.55803 6.94581 7.19162 7.44073 8.97554 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.003521 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.677533 B = 7949.985769 C = 8581.629175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.040 3.960 10 C -0.081 4.081 11 C 0.085 3.915 12 H 0.109 0.891 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.582 6.582 16 N -0.717 5.717 17 C 0.149 3.851 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.108 4.108 23 C -0.129 4.129 24 H 0.262 0.738 25 H 0.005 0.995 26 H -0.006 1.006 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.344 0.656 30 H 0.346 0.654 31 H 0.412 0.588 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 -20.805 8.887 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.119 4.119 11 C -0.031 4.031 12 H 0.127 0.873 13 N -0.348 5.348 14 C 0.274 3.726 15 O -0.462 6.462 16 N -0.368 5.368 17 C 0.045 3.955 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.167 4.167 24 H 0.071 0.929 25 H 0.023 0.977 26 H 0.013 0.987 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.248 0.752 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.375 -20.443 8.400 24.008 hybrid contribution 0.468 0.374 -0.184 0.627 sum 9.843 -20.069 8.217 23.815 Atomic orbital electron populations 1.70101 1.07650 1.27600 1.51665 1.25913 0.95710 1.03056 0.94947 0.85583 0.78330 0.78548 0.79063 1.19640 1.20919 1.19002 1.21718 0.93366 0.92778 1.50517 0.92621 1.18821 0.93872 0.91333 0.95728 1.21377 0.97701 0.92163 1.00690 1.21641 0.93785 0.92223 0.95462 0.87288 1.58978 1.27260 1.45240 1.03319 1.22306 0.81878 0.85130 0.83248 1.90628 1.61795 1.55494 1.38323 1.46358 1.46237 1.34575 1.09637 1.19980 0.90222 0.85756 0.99536 1.21650 0.97830 0.93915 1.02102 1.21246 0.98421 0.97246 0.98447 1.21909 1.00156 0.97903 0.95138 1.21366 1.00730 0.95661 0.97901 1.21225 0.97174 0.94668 1.01600 1.20773 0.97988 1.00319 0.97583 0.92910 0.97702 0.98712 0.91419 0.94112 0.84225 0.84118 0.75182 0.92523 0.90028 0.93929 0.93034 0.92331 0.91754 0.91618 0.91035 0.91661 0.92133 0.90234 0.91723 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 2.08 4.86 29.85 0.15 2.22 16 10 C -0.08 -3.29 4.78 30.59 0.15 -3.14 16 11 C 0.08 2.84 3.15 44.17 0.14 2.98 16 12 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 13 N -0.82 -28.33 8.44 -171.79 -1.45 -29.78 16 14 C 0.49 15.19 6.85 87.66 0.60 15.79 16 15 O -0.58 -21.55 15.90 -3.04 -0.05 -21.60 16 16 N -0.72 -17.07 5.01 -451.45 -2.26 -19.33 16 17 C 0.15 3.16 1.96 43.14 0.08 3.24 16 18 C -0.12 -2.26 5.19 30.22 0.16 -2.10 16 19 C -0.12 -1.98 5.32 30.16 0.16 -1.82 16 20 C -0.11 -1.43 5.85 31.31 0.18 -1.25 16 21 C -0.12 -1.35 5.31 30.13 0.16 -1.19 16 22 C -0.11 -1.43 5.61 30.20 0.17 -1.26 16 23 C -0.13 -2.04 4.61 28.74 0.13 -1.90 16 24 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 25 H 0.00 0.26 7.75 -2.38 -0.02 0.25 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.34 12.25 8.58 -89.69 -0.77 11.48 16 30 H 0.35 10.30 9.06 -89.70 -0.81 9.49 16 31 H 0.41 8.03 8.57 -92.71 -0.79 7.24 16 32 H 0.06 1.51 6.87 -2.39 -0.02 1.50 16 33 H 0.08 1.32 6.97 -2.38 -0.02 1.31 16 34 H 0.04 1.03 7.95 -2.39 -0.02 1.01 16 35 H 0.05 1.00 6.63 -2.39 -0.02 0.98 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.06 0.72 6.62 -2.39 -0.02 0.70 16 41 H 0.06 0.90 6.98 -2.39 -0.02 0.89 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 1.08 7.46 -2.38 -0.02 1.06 16 Total: -1.00 -68.72 342.46 -0.06 -68.77 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -1.38 Total: 30.91 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 2.77 Total: -18.83 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.43 Total: -105.82 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.72 -0.06 -68.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424075024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.821 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds