Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.46497 * 119.99716 * 179.97438 * 16 14 11 18 18 C 1.54244 * 108.89766 * 276.39700 * 17 16 14 19 19 C 1.50558 * 108.48407 * 159.18207 * 18 17 16 20 20 C 1.54064 * 112.41507 * 94.26643 * 19 18 17 21 21 C 1.54064 * 112.81613 * 318.28067 * 20 19 18 22 22 C 1.50471 * 112.49816 * 318.28158 * 21 20 19 23 23 C 1.45548 * 108.89203 * 153.60963 * 17 16 14 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 30 30 H 1.00898 * 110.99947 * 63.95776 * 13 11 10 31 31 H 0.96994 * 119.99782 * 0.02562 * 16 14 11 32 32 H 1.09000 * 108.87610 * 35.00272 * 17 16 14 33 33 H 1.08995 * 109.62855 * 278.97720 * 18 17 16 34 34 H 1.08996 * 109.62692 * 39.55707 * 18 17 16 35 35 H 1.09001 * 108.92091 * 333.51557 * 19 18 17 36 36 H 1.08999 * 108.83395 * 214.96752 * 19 18 17 37 37 H 1.08991 * 108.81474 * 197.42055 * 20 19 18 38 38 H 1.09008 * 108.72465 * 79.07880 * 20 19 18 39 39 H 1.09001 * 108.87998 * 197.50845 * 21 20 19 40 40 H 1.09004 * 108.87804 * 79.06379 * 21 20 19 41 41 H 1.08999 * 109.62953 * 334.45092 * 22 21 20 42 42 H 1.08995 * 109.63255 * 213.86114 * 22 21 20 43 43 H 1.09000 * 108.89023 * 303.43716 * 23 17 16 44 44 H 1.08999 * 108.89499 * 62.03020 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7877 -5.0072 -0.8404 13 7 0.7288 -5.1181 1.2567 14 6 2.4546 -6.1299 -0.1227 15 8 2.7868 -6.7532 0.8633 16 7 2.9571 -6.4594 -1.3292 17 6 3.9049 -7.5700 -1.4494 18 6 5.3215 -7.0555 -1.1216 19 6 6.1812 -8.2323 -0.7438 20 6 6.9731 -8.7900 -1.9418 21 6 6.1360 -8.8541 -3.2336 22 6 4.7351 -9.3454 -2.9881 23 6 3.8146 -8.1232 -2.7926 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 1.3489 -5.1022 2.0525 30 1 0.0240 -4.4001 1.3329 31 1 2.6917 -5.9607 -2.1176 32 1 3.6350 -8.3433 -0.7302 33 1 5.7420 -6.5586 -1.9958 34 1 5.2730 -6.3558 -0.2872 35 1 5.5443 -9.0215 -0.3440 36 1 6.8837 -7.9211 0.0293 37 1 7.3197 -9.7941 -1.6974 38 1 7.8398 -8.1522 -2.1159 39 1 6.6264 -9.5251 -3.9388 40 1 6.0884 -7.8576 -3.6728 41 1 4.7162 -9.9651 -2.0916 42 1 4.3952 -9.9262 -3.8455 43 1 2.7841 -8.4237 -2.9820 44 1 4.0952 -7.3532 -3.5111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424075025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -74.717671 kcal Electronic energy + Delta-G solvation = -21015.669207 eV Core-core repulsion = 17966.132710 eV Total energy + Delta-G solvation = -3049.536497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19149 -38.45294 -35.47353 -34.52197 -32.84109 -32.32670 -30.76489 -29.86433 -26.60214 -25.05379 -24.60262 -23.35010 -20.89494 -20.66841 -19.69420 -19.37430 -17.29170 -16.64347 -16.21392 -15.55771 -15.06494 -14.81813 -14.45126 -14.40229 -14.09830 -13.88886 -13.50088 -13.18911 -13.00510 -12.89117 -12.41206 -12.32146 -12.14948 -11.70166 -11.47371 -11.15650 -11.06489 -10.92049 -10.79285 -10.72589 -10.65511 -10.51676 -10.43711 -9.98389 -9.86579 -9.25803 -9.15950 -8.88460 -8.44388 -8.15606 -6.08750 -4.11698 3.00403 3.25920 3.30581 3.33997 3.38035 4.39306 4.41819 4.59039 4.64647 4.93328 4.94371 5.05980 5.07637 5.14788 5.22031 5.27743 5.30634 5.38633 5.54126 5.61346 5.66321 5.76976 5.79824 5.81333 5.92026 5.95734 6.00858 6.04505 6.15982 6.23528 6.30291 6.32584 6.53786 6.67318 6.88834 7.47064 7.53020 7.62568 7.77678 7.88651 7.93354 8.31445 8.54986 8.94583 9.53246 11.02207 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.003720 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.925798 B = 7524.683966 C = 8065.334951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.136 4.136 11 C 0.074 3.926 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.539 6.539 16 N -0.735 5.735 17 C 0.150 3.850 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.130 4.130 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.345 0.655 30 H 0.353 0.647 31 H 0.399 0.601 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.556 -17.204 -6.979 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.176 4.176 11 C -0.042 4.042 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.414 6.414 16 N -0.387 5.387 17 C 0.045 3.955 18 C -0.164 4.164 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.168 4.168 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.169 0.831 31 H 0.233 0.767 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.401 -18.258 -6.525 21.548 hybrid contribution 0.713 2.282 -0.233 2.402 sum 10.113 -15.976 -6.758 20.079 Atomic orbital electron populations 1.69959 1.06019 1.26657 1.50571 1.25016 0.94869 0.99316 0.95155 0.86532 0.80111 0.83696 0.77656 1.19760 1.20948 1.20937 1.21224 0.93052 0.90900 1.50927 0.92683 1.19109 0.93740 0.91152 0.97338 1.22363 0.99830 0.93999 1.01424 1.21480 0.94734 0.92441 0.95497 0.88724 1.58741 1.18464 1.55844 1.03229 1.20865 0.80887 0.84338 0.82652 1.90624 1.60478 1.53269 1.37057 1.46255 1.46932 1.35447 1.10057 1.19841 0.88618 0.89174 0.97819 1.21737 0.94527 0.98137 1.01986 1.21265 0.98733 0.97912 0.97491 1.21933 0.98241 1.00705 0.94596 1.21367 0.95538 1.01505 0.97397 1.21224 0.94649 0.96913 1.02086 1.20784 1.00799 0.98365 0.96821 0.92944 0.96403 0.96355 0.92581 0.92763 0.84181 0.83141 0.76698 0.89997 0.91557 0.91285 0.91930 0.92166 0.92420 0.92378 0.92406 0.91916 0.91325 0.91561 0.91443 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.69 4.78 -26.74 -0.13 -2.82 16 11 C 0.07 1.27 3.21 -68.87 -0.22 1.05 16 12 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 13 N -0.83 -14.59 8.94 -5.66 -0.05 -14.64 16 14 C 0.53 8.77 6.88 -10.98 -0.08 8.69 16 15 O -0.54 -10.57 15.90 5.55 0.09 -10.49 16 16 N -0.73 -9.55 5.01 -56.62 -0.28 -9.83 16 17 C 0.15 1.72 1.96 -70.79 -0.14 1.58 16 18 C -0.13 -1.43 5.19 -27.30 -0.14 -1.57 16 19 C -0.12 -1.15 5.32 -27.40 -0.15 -1.29 16 20 C -0.12 -0.94 5.85 -25.62 -0.15 -1.09 16 21 C -0.12 -0.90 5.31 -27.44 -0.15 -1.04 16 22 C -0.11 -0.84 5.61 -27.34 -0.15 -1.00 16 23 C -0.13 -1.14 4.61 -29.59 -0.14 -1.28 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.35 6.15 8.58 -39.29 -0.34 5.82 16 30 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 31 H 0.40 4.42 8.57 -40.82 -0.35 4.07 16 32 H 0.08 1.10 6.86 -51.93 -0.36 0.74 16 33 H 0.07 0.70 6.97 -51.93 -0.36 0.34 16 34 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 35 H 0.06 0.64 6.63 -51.93 -0.34 0.30 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.49 6.62 -51.93 -0.34 0.14 16 41 H 0.07 0.55 6.98 -51.93 -0.36 0.19 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.56 7.46 -51.93 -0.39 0.17 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -30.82 340.52 -9.06 -39.88 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.68 Total: 10.52 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.98 Total: -11.51 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.40 Total: -49.82 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.82 -9.06 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424075025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.839 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds