Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.46497 * 119.99716 * 179.97438 * 16 14 11 18 18 C 1.54244 * 108.89766 * 276.39700 * 17 16 14 19 19 C 1.50558 * 108.48407 * 159.18207 * 18 17 16 20 20 C 1.54064 * 112.41507 * 94.26643 * 19 18 17 21 21 C 1.54064 * 112.81613 * 318.28067 * 20 19 18 22 22 C 1.50471 * 112.49816 * 318.28158 * 21 20 19 23 23 C 1.45548 * 108.89203 * 153.60963 * 17 16 14 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 30 30 H 1.00898 * 110.99947 * 63.95776 * 13 11 10 31 31 H 0.96994 * 119.99782 * 0.02562 * 16 14 11 32 32 H 1.09000 * 108.87610 * 35.00272 * 17 16 14 33 33 H 1.08995 * 109.62855 * 278.97720 * 18 17 16 34 34 H 1.08996 * 109.62692 * 39.55707 * 18 17 16 35 35 H 1.09001 * 108.92091 * 333.51557 * 19 18 17 36 36 H 1.08999 * 108.83395 * 214.96752 * 19 18 17 37 37 H 1.08991 * 108.81474 * 197.42055 * 20 19 18 38 38 H 1.09008 * 108.72465 * 79.07880 * 20 19 18 39 39 H 1.09001 * 108.87998 * 197.50845 * 21 20 19 40 40 H 1.09004 * 108.87804 * 79.06379 * 21 20 19 41 41 H 1.08999 * 109.62953 * 334.45092 * 22 21 20 42 42 H 1.08995 * 109.63255 * 213.86114 * 22 21 20 43 43 H 1.09000 * 108.89023 * 303.43716 * 23 17 16 44 44 H 1.08999 * 108.89499 * 62.03020 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7877 -5.0072 -0.8404 13 7 0.7288 -5.1181 1.2567 14 6 2.4546 -6.1299 -0.1227 15 8 2.7868 -6.7532 0.8633 16 7 2.9571 -6.4594 -1.3292 17 6 3.9049 -7.5700 -1.4494 18 6 5.3215 -7.0555 -1.1216 19 6 6.1812 -8.2323 -0.7438 20 6 6.9731 -8.7900 -1.9418 21 6 6.1360 -8.8541 -3.2336 22 6 4.7351 -9.3454 -2.9881 23 6 3.8146 -8.1232 -2.7926 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 1.3489 -5.1022 2.0525 30 1 0.0240 -4.4001 1.3329 31 1 2.6917 -5.9607 -2.1176 32 1 3.6350 -8.3433 -0.7302 33 1 5.7420 -6.5586 -1.9958 34 1 5.2730 -6.3558 -0.2872 35 1 5.5443 -9.0215 -0.3440 36 1 6.8837 -7.9211 0.0293 37 1 7.3197 -9.7941 -1.6974 38 1 7.8398 -8.1522 -2.1159 39 1 6.6264 -9.5251 -3.9388 40 1 6.0884 -7.8576 -3.6728 41 1 4.7162 -9.9651 -2.0916 42 1 4.3952 -9.9262 -3.8455 43 1 2.7841 -8.4237 -2.9820 44 1 4.0952 -7.3532 -3.5111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424075025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -95.395819 kcal Electronic energy + Delta-G solvation = -21016.565879 eV Core-core repulsion = 17966.132710 eV Total energy + Delta-G solvation = -3050.433169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33318 -39.49093 -37.04775 -35.58572 -34.83728 -33.07186 -31.73660 -31.67335 -28.19608 -26.16066 -25.66210 -24.63247 -22.38492 -21.77720 -20.99146 -20.11646 -18.85990 -18.08542 -17.66409 -16.59626 -16.41822 -16.09461 -15.94813 -15.62189 -15.30644 -14.97966 -14.73186 -14.55208 -14.15977 -13.96205 -13.91327 -13.46904 -13.18327 -13.05894 -12.95895 -12.71015 -12.50699 -12.25858 -11.99670 -11.81813 -11.69581 -11.56016 -11.40838 -11.29134 -11.22868 -11.13886 -10.67204 -10.57067 -10.03486 -9.64285 -8.22155 -6.32495 1.38276 1.39817 1.51660 1.64675 2.15736 2.39625 3.11527 3.63801 3.74606 3.77594 3.84458 4.03293 4.12909 4.20834 4.23657 4.26415 4.32909 4.41472 4.48882 4.56404 4.66206 4.83134 4.84010 4.93622 5.00654 5.08155 5.08439 5.20160 5.28226 5.32754 5.35065 5.36969 5.45731 5.46189 5.58423 5.59654 5.65138 5.80125 6.07425 6.20792 6.47031 6.58472 6.83082 7.28325 7.36703 8.88830 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.003720 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.925798 B = 7524.683966 C = 8065.334951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.119 4.119 11 C 0.080 3.920 12 H 0.109 0.891 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.572 6.572 16 N -0.720 5.720 17 C 0.153 3.847 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.127 4.127 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.343 0.657 30 H 0.352 0.648 31 H 0.411 0.589 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 -17.616 -8.574 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.036 4.036 12 H 0.126 0.874 13 N -0.361 5.361 14 C 0.313 3.687 15 O -0.450 6.450 16 N -0.372 5.372 17 C 0.049 3.951 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.165 4.165 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.021 0.979 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.247 0.753 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.604 -18.680 -8.160 22.978 hybrid contribution 0.330 2.386 0.268 2.423 sum 10.934 -16.294 -7.892 21.150 Atomic orbital electron populations 1.70067 1.07483 1.27710 1.51388 1.25869 0.95743 1.02990 0.94741 0.85482 0.78995 0.79242 0.77828 1.19025 1.20187 1.20554 1.21644 0.93320 0.92471 1.50792 0.92787 1.18973 0.94029 0.92010 0.95726 1.22108 0.98735 0.93780 1.01260 1.21427 0.94836 0.91442 0.95852 0.87352 1.58759 1.18398 1.55610 1.03378 1.20696 0.80731 0.83997 0.83270 1.90613 1.61607 1.54428 1.38379 1.46201 1.46195 1.35467 1.09318 1.19955 0.88023 0.88017 0.99078 1.21680 0.94903 0.98195 1.01167 1.21243 0.98487 0.97096 0.98466 1.21909 0.98092 1.01102 0.94019 1.21374 0.95329 1.01888 0.97148 1.21225 0.94532 0.96279 1.02525 1.20767 1.01543 0.99196 0.95002 0.92718 0.97982 0.97896 0.91602 0.93974 0.84418 0.83309 0.75275 0.92029 0.90370 0.94451 0.92598 0.92673 0.91534 0.91988 0.90947 0.91933 0.91925 0.89929 0.91080 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 2 C 0.01 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.47 4.74 29.85 0.14 1.61 16 10 C -0.12 -4.69 4.78 30.59 0.15 -4.54 16 11 C 0.08 2.72 3.21 44.17 0.14 2.86 16 12 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 13 N -0.83 -29.35 8.94 -171.81 -1.54 -30.88 16 14 C 0.53 17.40 6.88 87.66 0.60 18.00 16 15 O -0.57 -22.68 15.90 -3.05 -0.05 -22.73 16 16 N -0.72 -18.00 5.01 -451.44 -2.26 -20.26 16 17 C 0.15 3.37 1.96 43.14 0.08 3.46 16 18 C -0.12 -2.69 5.19 30.22 0.16 -2.53 16 19 C -0.11 -2.20 5.32 30.16 0.16 -2.04 16 20 C -0.11 -1.60 5.85 31.31 0.18 -1.42 16 21 C -0.12 -1.46 5.31 30.14 0.16 -1.30 16 22 C -0.11 -1.38 5.61 30.20 0.17 -1.21 16 23 C -0.13 -1.97 4.61 28.74 0.13 -1.84 16 24 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.00 0.10 6.87 -2.39 -0.02 0.08 16 26 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.34 12.43 8.58 -89.69 -0.77 11.66 16 30 H 0.35 12.55 7.55 -89.70 -0.68 11.87 16 31 H 0.41 8.36 8.57 -92.71 -0.79 7.56 16 32 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16 33 H 0.08 1.53 6.97 -2.39 -0.02 1.52 16 34 H 0.04 1.06 7.96 -2.39 -0.02 1.04 16 35 H 0.06 1.13 6.63 -2.39 -0.02 1.12 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.78 6.62 -2.38 -0.02 0.76 16 41 H 0.06 0.90 6.98 -2.39 -0.02 0.88 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.08 7.46 -2.39 -0.02 1.06 16 Total: -1.00 -65.74 340.52 0.00 -65.75 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -1.24 Total: 34.74 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 2.77 Total: -17.99 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.51 Total: -105.25 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.74 0.00 -65.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424075025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.648 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds