Wall clock time and date at job start Mon Mar 30 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.52820 * 2 1 4 4 C 1.53041 * 109.49689 * 239.91888 * 2 1 3 5 5 C 1.53045 * 109.53979 * 178.68127 * 4 2 1 6 6 C 1.52759 * 109.37971 * 61.24009 * 5 4 2 7 7 N 1.46923 * 109.01187 * 305.58806 * 6 5 4 8 8 C 1.34777 * 120.63183 * 233.58444 * 7 6 5 9 9 O 1.21284 * 120.00069 * 179.71806 * 8 7 6 10 10 C 1.50699 * 120.00049 * 359.72087 * 8 7 6 11 11 H 1.09002 * 109.46959 * 319.99772 * 10 8 7 12 12 N 1.46899 * 109.47244 * 199.99894 * 10 8 7 13 13 C 1.52997 * 109.47078 * 79.99684 * 10 8 7 14 14 C 1.53004 * 109.47236 * 184.99974 * 13 10 8 15 15 C 1.50703 * 109.47376 * 180.02562 * 14 13 10 16 16 H 1.07998 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99813 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46904 * 90.00279 * 19 17 15 21 21 H 1.48501 * 109.47144 * 210.00274 * 19 17 15 22 22 H 1.48493 * 109.47125 * 330.00250 * 19 17 15 23 23 C 1.46928 * 118.73993 * 53.31071 * 7 6 5 24 24 H 1.09002 * 109.46948 * 299.91456 * 1 2 3 25 25 H 1.08995 * 109.47425 * 59.91964 * 1 2 3 26 26 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47531 * 180.08478 * 3 2 1 28 28 H 1.09005 * 109.47003 * 300.08485 * 3 2 1 29 29 H 1.09004 * 109.47033 * 60.07424 * 3 2 1 30 30 H 1.09002 * 109.45990 * 298.70187 * 4 2 1 31 31 H 1.09003 * 109.45844 * 58.66240 * 4 2 1 32 32 H 1.08996 * 109.49639 * 181.31550 * 5 4 2 33 33 H 1.08996 * 109.49895 * 301.38497 * 5 4 2 34 34 H 1.09007 * 109.51188 * 185.70677 * 6 5 4 35 35 H 1.09003 * 109.43615 * 65.42640 * 6 5 4 36 36 H 1.00903 * 110.99833 * 299.99603 * 12 10 8 37 37 H 1.00901 * 111.00152 * 63.94840 * 12 10 8 38 38 H 1.09001 * 109.47630 * 305.00104 * 13 10 8 39 39 H 1.09004 * 109.47346 * 65.00234 * 13 10 8 40 40 H 1.09001 * 109.46917 * 300.00567 * 14 13 10 41 41 H 1.09004 * 109.46741 * 59.99889 * 14 13 10 42 42 H 0.96995 * 119.99701 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.58639 * 66.42561 * 23 7 6 44 44 H 1.08997 * 109.59066 * 186.86103 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0407 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2661 6 6 4.1054 -1.4216 -0.0333 7 7 3.5046 -0.8291 1.1695 8 6 4.2812 -0.3856 2.1778 9 8 3.7733 0.1061 3.1633 10 6 5.7806 -0.5007 2.0808 11 1 6.0432 -1.4584 1.6313 12 7 6.3665 -0.4136 3.4251 13 6 6.3242 0.6360 1.2129 14 6 7.8294 0.4489 1.0114 15 6 8.3649 1.5690 0.1571 16 1 7.6985 2.3376 -0.2055 17 6 9.7059 1.6130 -0.1607 18 7 10.5174 0.6772 0.2813 19 14 10.3696 3.0009 -1.2202 20 1 10.7931 4.1280 -0.3510 21 1 11.5345 2.5135 -2.0016 22 1 9.3088 3.4644 -2.1502 23 6 2.0413 -0.7238 1.2496 24 1 -0.3633 0.5125 0.8908 25 1 -0.3634 0.5150 -0.8892 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1314 1.4410 -0.0015 28 1 1.6773 1.9566 -0.8893 29 1 1.6796 1.9558 0.8907 30 1 1.6966 -1.7573 -1.2353 31 1 1.6580 -0.2245 -2.1389 32 1 3.9333 -1.1897 -2.1671 33 1 3.9159 0.3388 -1.2547 34 1 5.1895 -1.3160 0.0099 35 1 3.8412 -2.4775 -0.0915 36 1 6.1372 0.4660 3.8631 37 1 6.0731 -1.1904 3.9984 38 1 5.8239 0.6251 0.2446 39 1 6.1396 1.5902 1.7065 40 1 8.3297 0.4599 1.9798 41 1 8.0140 -0.5052 0.5179 42 1 11.4607 0.7080 0.0574 43 1 1.6052 -1.7216 1.2980 44 1 1.7638 -0.1579 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424092702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:19 Heat of formation + Delta-G solvation = -62.664503 kcal Electronic energy + Delta-G solvation = -21906.034071 eV Core-core repulsion = 18857.020238 eV Total energy + Delta-G solvation = -3049.013833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54870 -38.25087 -35.31101 -34.30937 -32.78581 -31.96234 -30.09817 -27.62902 -27.40821 -26.21896 -25.32245 -23.09622 -22.30320 -20.39969 -19.26379 -18.34022 -17.23488 -16.35124 -15.84655 -15.47736 -15.12446 -14.93290 -14.54177 -14.36465 -13.98243 -13.77656 -13.41280 -13.22651 -12.97137 -12.32088 -12.23790 -12.09907 -12.00871 -11.77781 -11.63941 -11.42784 -11.17068 -10.94609 -10.88697 -10.64324 -10.59084 -10.48358 -10.40552 -9.98973 -9.78128 -9.35101 -8.99761 -8.54648 -8.33185 -8.17597 -5.93636 -3.95708 2.79692 3.12402 3.34861 3.41226 3.43830 4.44224 4.50192 4.62910 4.64477 4.83349 4.94012 5.03336 5.11007 5.23556 5.33710 5.41926 5.43341 5.49795 5.53275 5.58681 5.68092 5.71415 5.75960 5.80571 5.84472 5.90091 5.91378 6.04560 6.11144 6.16353 6.39265 6.44590 6.58470 6.68187 7.09023 7.39570 7.57237 7.76047 7.82139 7.96257 8.13540 8.33558 8.48702 9.12198 9.67485 11.17284 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.005057 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.121028 B = 5535.215059 C = 6230.653862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.107 4.107 5 C -0.140 4.140 6 C 0.101 3.899 7 N -0.608 5.608 8 C 0.486 3.514 9 O -0.556 6.556 10 C 0.077 3.923 11 H 0.097 0.903 12 N -0.807 5.807 13 C -0.096 4.096 14 C 0.032 3.968 15 C -0.521 4.521 16 H 0.051 0.949 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.120 3.880 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.347 0.653 37 H 0.333 0.667 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.012 0.988 42 H 0.259 0.741 43 H 0.061 0.939 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.505 -5.350 -2.107 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.198 4.198 4 C -0.145 4.145 5 C -0.178 4.178 6 C -0.021 4.021 7 N -0.341 5.341 8 C 0.273 3.727 9 O -0.435 6.435 10 C -0.039 4.039 11 H 0.115 0.885 12 N -0.335 5.335 13 C -0.134 4.134 14 C -0.005 4.005 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.004 4.004 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.849 -5.204 -1.938 18.693 hybrid contribution -0.644 0.774 -0.393 1.081 sum -18.493 -4.430 -2.331 19.159 Atomic orbital electron populations 1.21798 0.94100 1.01704 1.02011 1.20909 0.95400 0.96360 0.95414 1.21874 1.02064 0.94504 1.01332 1.21582 0.95599 1.00167 0.97105 1.21913 0.95658 1.02441 0.97788 1.21785 0.99757 0.96613 0.83989 1.48193 1.06233 1.61181 1.18529 1.22711 0.91904 0.76133 0.81932 1.90622 1.75938 1.45195 1.31706 1.21857 0.85577 1.03011 0.93409 0.88509 1.59020 1.63202 1.08135 1.03142 1.21689 1.01126 0.94527 0.96045 1.19013 0.87375 0.96375 0.97756 1.21262 0.93360 1.09805 1.31538 0.93045 1.24977 0.97139 0.95892 0.96223 1.69971 1.04186 1.33413 1.45595 0.86670 0.78550 0.82623 0.80582 1.20730 1.21291 1.20020 1.21615 0.80322 0.99927 0.98490 0.92521 0.92336 0.92650 0.91798 0.92795 0.92889 0.91990 0.91722 0.90450 0.90520 0.88299 0.91650 0.83892 0.85521 0.92728 0.92932 0.94697 0.96930 0.93108 0.92083 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.48 37.15 0.32 -0.83 16 2 C -0.08 -0.81 0.77 -154.39 -0.12 -0.93 16 3 C -0.14 -1.65 7.99 37.16 0.30 -1.35 16 4 C -0.11 -0.99 4.71 -26.69 -0.13 -1.12 16 5 C -0.14 -1.49 5.72 -26.83 -0.15 -1.64 16 6 C 0.10 1.19 5.73 -3.94 -0.02 1.16 16 7 N -0.61 -8.18 2.42 -173.02 -0.42 -8.60 16 8 C 0.49 7.97 6.94 -10.99 -0.08 7.89 16 9 O -0.56 -10.55 15.66 5.55 0.09 -10.46 16 10 C 0.08 1.32 2.29 -68.87 -0.16 1.17 16 11 H 0.10 1.58 6.81 -51.93 -0.35 1.23 16 12 N -0.81 -13.97 8.44 -5.66 -0.05 -14.01 16 13 C -0.10 -1.93 4.45 -26.73 -0.12 -2.05 16 14 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.12 1.42 5.11 -3.71 -0.02 1.40 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.88 5.97 -51.93 -0.31 0.57 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.95 6.33 -51.93 -0.33 0.62 16 34 H 0.10 1.29 4.82 -51.92 -0.25 1.04 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.35 6.11 8.58 -39.29 -0.34 5.77 16 37 H 0.33 5.04 9.06 -39.29 -0.36 4.68 16 38 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -31.42 339.33 -7.95 -39.38 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.68 Total: 6.97 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.73 Total: -8.97 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.27 Total: -48.65 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.42 -7.95 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424092702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.287 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds