Wall clock time and date at job start Mon Mar 30 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.52820 * 2 1 4 4 C 1.53041 * 109.49689 * 239.91888 * 2 1 3 5 5 C 1.53045 * 109.53979 * 178.68127 * 4 2 1 6 6 C 1.52759 * 109.37971 * 61.24009 * 5 4 2 7 7 N 1.46923 * 109.01187 * 305.58806 * 6 5 4 8 8 C 1.34777 * 120.63183 * 233.58444 * 7 6 5 9 9 O 1.21284 * 120.00069 * 179.71806 * 8 7 6 10 10 C 1.50699 * 120.00049 * 359.72087 * 8 7 6 11 11 H 1.09002 * 109.46959 * 319.99772 * 10 8 7 12 12 N 1.46899 * 109.47244 * 199.99894 * 10 8 7 13 13 C 1.52997 * 109.47078 * 79.99684 * 10 8 7 14 14 C 1.53004 * 109.47236 * 184.99974 * 13 10 8 15 15 C 1.50703 * 109.47376 * 180.02562 * 14 13 10 16 16 H 1.07998 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99813 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46904 * 90.00279 * 19 17 15 21 21 H 1.48501 * 109.47144 * 210.00274 * 19 17 15 22 22 H 1.48493 * 109.47125 * 330.00250 * 19 17 15 23 23 C 1.46928 * 118.73993 * 53.31071 * 7 6 5 24 24 H 1.09002 * 109.46948 * 299.91456 * 1 2 3 25 25 H 1.08995 * 109.47425 * 59.91964 * 1 2 3 26 26 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47531 * 180.08478 * 3 2 1 28 28 H 1.09005 * 109.47003 * 300.08485 * 3 2 1 29 29 H 1.09004 * 109.47033 * 60.07424 * 3 2 1 30 30 H 1.09002 * 109.45990 * 298.70187 * 4 2 1 31 31 H 1.09003 * 109.45844 * 58.66240 * 4 2 1 32 32 H 1.08996 * 109.49639 * 181.31550 * 5 4 2 33 33 H 1.08996 * 109.49895 * 301.38497 * 5 4 2 34 34 H 1.09007 * 109.51188 * 185.70677 * 6 5 4 35 35 H 1.09003 * 109.43615 * 65.42640 * 6 5 4 36 36 H 1.00903 * 110.99833 * 299.99603 * 12 10 8 37 37 H 1.00901 * 111.00152 * 63.94840 * 12 10 8 38 38 H 1.09001 * 109.47630 * 305.00104 * 13 10 8 39 39 H 1.09004 * 109.47346 * 65.00234 * 13 10 8 40 40 H 1.09001 * 109.46917 * 300.00567 * 14 13 10 41 41 H 1.09004 * 109.46741 * 59.99889 * 14 13 10 42 42 H 0.96995 * 119.99701 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.58639 * 66.42561 * 23 7 6 44 44 H 1.08997 * 109.59066 * 186.86103 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0407 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2661 6 6 4.1054 -1.4216 -0.0333 7 7 3.5046 -0.8291 1.1695 8 6 4.2812 -0.3856 2.1778 9 8 3.7733 0.1061 3.1633 10 6 5.7806 -0.5007 2.0808 11 1 6.0432 -1.4584 1.6313 12 7 6.3665 -0.4136 3.4251 13 6 6.3242 0.6360 1.2129 14 6 7.8294 0.4489 1.0114 15 6 8.3649 1.5690 0.1571 16 1 7.6985 2.3376 -0.2055 17 6 9.7059 1.6130 -0.1607 18 7 10.5174 0.6772 0.2813 19 14 10.3696 3.0009 -1.2202 20 1 10.7931 4.1280 -0.3510 21 1 11.5345 2.5135 -2.0016 22 1 9.3088 3.4644 -2.1502 23 6 2.0413 -0.7238 1.2496 24 1 -0.3633 0.5125 0.8908 25 1 -0.3634 0.5150 -0.8892 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1314 1.4410 -0.0015 28 1 1.6773 1.9566 -0.8893 29 1 1.6796 1.9558 0.8907 30 1 1.6966 -1.7573 -1.2353 31 1 1.6580 -0.2245 -2.1389 32 1 3.9333 -1.1897 -2.1671 33 1 3.9159 0.3388 -1.2547 34 1 5.1895 -1.3160 0.0099 35 1 3.8412 -2.4775 -0.0915 36 1 6.1372 0.4660 3.8631 37 1 6.0731 -1.1904 3.9984 38 1 5.8239 0.6251 0.2446 39 1 6.1396 1.5902 1.7065 40 1 8.3297 0.4599 1.9798 41 1 8.0140 -0.5052 0.5179 42 1 11.4607 0.7080 0.0574 43 1 1.6052 -1.7216 1.2980 44 1 1.7638 -0.1579 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424092702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:18 Heat of formation + Delta-G solvation = -82.956595 kcal Electronic energy + Delta-G solvation = -21906.914002 eV Core-core repulsion = 18857.020238 eV Total energy + Delta-G solvation = -3049.893764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68976 -39.35372 -36.90025 -35.38305 -34.78195 -32.88678 -31.94630 -28.92237 -28.23621 -27.43317 -26.69617 -24.72659 -23.20133 -22.18205 -20.43207 -19.30838 -18.62014 -18.25079 -17.17897 -16.90620 -16.42997 -16.19094 -15.87008 -15.49555 -15.15153 -14.85186 -14.73633 -14.37224 -14.14497 -13.92981 -13.78154 -13.44704 -13.03679 -12.87484 -12.80813 -12.70278 -12.50176 -12.45190 -12.23582 -11.99424 -11.85116 -11.71518 -11.63881 -11.39715 -11.23258 -11.17399 -10.95578 -10.48656 -9.63840 -9.61109 -8.13311 -6.23472 1.41747 1.43044 1.48117 1.53743 2.00871 2.44805 3.19864 3.42442 3.60844 3.77022 3.81231 3.83998 4.05418 4.07444 4.22629 4.29122 4.38916 4.50291 4.58282 4.68898 4.71645 4.76805 4.82166 4.86571 4.93091 4.94556 4.97472 5.10869 5.12211 5.18254 5.27787 5.32453 5.37664 5.50392 5.56993 5.59326 5.83486 5.98140 6.07199 6.30356 6.34001 6.48955 6.94315 7.07072 7.44590 8.97962 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.005057 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.121028 B = 5535.215059 C = 6230.653862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.096 3.904 7 N -0.600 5.600 8 C 0.487 3.513 9 O -0.586 6.586 10 C 0.085 3.915 11 H 0.108 0.892 12 N -0.818 5.818 13 C -0.078 4.078 14 C 0.042 3.958 15 C -0.542 4.542 16 H 0.053 0.947 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.957 3.043 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.264 1.264 23 C 0.117 3.883 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.344 0.656 37 H 0.346 0.654 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.004 0.996 41 H -0.004 1.004 42 H 0.262 0.738 43 H 0.083 0.917 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.136 -5.789 -3.847 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 C -0.196 4.196 4 C -0.139 4.139 5 C -0.177 4.177 6 C -0.026 4.026 7 N -0.331 5.331 8 C 0.274 3.726 9 O -0.467 6.467 10 C -0.031 4.031 11 H 0.125 0.875 12 N -0.347 5.347 13 C -0.116 4.116 14 C 0.005 3.995 15 C -0.580 4.580 16 H 0.072 0.928 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.006 4.006 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.014 0.986 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.509 -5.662 -3.706 20.649 hybrid contribution -0.141 0.882 0.147 0.906 sum -19.650 -4.779 -3.559 20.534 Atomic orbital electron populations 1.21761 0.92189 1.02841 1.02341 1.20904 0.96817 0.94909 0.95017 1.21857 1.00332 0.96073 1.01358 1.21571 0.94205 1.01265 0.96835 1.21910 0.96949 1.01080 0.97759 1.21966 0.98822 0.98210 0.83603 1.48229 1.07015 1.59815 1.18088 1.22347 0.91520 0.76389 0.82359 1.90609 1.76206 1.46820 1.33084 1.21640 0.86515 1.02052 0.92863 0.87462 1.59003 1.63652 1.08568 1.03480 1.21381 0.97951 0.95090 0.97221 1.18805 0.90379 0.94904 0.95429 1.21680 0.93925 1.10496 1.31891 0.92842 1.25857 0.97476 0.98460 0.97525 1.70099 1.04570 1.35351 1.46881 0.85570 0.78084 0.79243 0.78873 1.20285 1.20629 1.18800 1.21786 0.79061 1.01088 0.98641 0.92975 0.91302 0.91101 0.94377 0.91494 0.94129 0.90088 0.90511 0.88782 0.92748 0.90010 0.88898 0.84262 0.84097 0.91632 0.94433 0.97729 0.98593 0.92912 0.89861 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.48 71.98 0.61 -1.21 16 2 C -0.08 -1.37 0.77 -52.10 -0.04 -1.41 16 3 C -0.14 -3.16 7.99 71.98 0.58 -2.58 16 4 C -0.10 -1.55 4.71 30.62 0.14 -1.40 16 5 C -0.14 -2.67 5.72 30.53 0.17 -2.49 16 6 C 0.10 2.07 5.73 86.22 0.49 2.57 16 7 N -0.60 -15.52 2.42 -819.72 -1.98 -17.51 16 8 C 0.49 15.99 6.94 87.66 0.61 16.60 16 9 O -0.59 -22.53 15.66 -3.04 -0.05 -22.58 16 10 C 0.08 2.95 2.29 44.17 0.10 3.05 16 11 H 0.11 3.50 6.81 -2.39 -0.02 3.48 16 12 N -0.82 -28.99 8.44 -171.81 -1.45 -30.44 16 13 C -0.08 -3.24 4.45 30.59 0.14 -3.10 16 14 C 0.04 2.20 4.86 29.85 0.15 2.34 16 15 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 17 C 0.00 0.27 5.46 84.65 0.46 0.74 16 18 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 19 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.12 2.58 5.11 86.36 0.44 3.02 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.04 1.05 5.97 -2.39 -0.01 1.04 16 28 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.30 6.33 -2.39 -0.02 1.28 16 34 H 0.08 2.07 4.82 -2.38 -0.01 2.06 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.34 12.53 8.58 -89.69 -0.77 11.76 16 37 H 0.35 10.57 9.06 -89.69 -0.81 9.75 16 38 H 0.07 2.54 6.95 -2.39 -0.02 2.53 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 41 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.80 7.00 -2.39 -0.02 1.79 16 Total: -1.00 -68.42 339.33 2.32 -66.10 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.60 Total: 28.71 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.09 Total: -14.46 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.15 Total: -104.18 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.42 2.32 -66.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424092702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.861 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds