Wall clock time and date at job start Mon Mar 30 2020 01:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.52167 * 2 1 4 4 C 1.53041 * 109.49707 * 239.91663 * 2 1 3 5 5 C 1.53039 * 109.53647 * 178.68229 * 4 2 1 6 6 C 1.52758 * 109.38439 * 61.24252 * 5 4 2 7 7 N 1.46927 * 109.00682 * 305.58958 * 6 5 4 8 8 C 1.34784 * 120.62995 * 233.58186 * 7 6 5 9 9 O 1.21279 * 119.99925 * 179.71847 * 8 7 6 10 10 C 1.50700 * 119.99961 * 359.72079 * 8 7 6 11 11 H 1.09000 * 109.47153 * 39.99352 * 10 8 7 12 12 N 1.46893 * 109.47248 * 160.00051 * 10 8 7 13 13 C 1.53005 * 109.47080 * 280.00010 * 10 8 7 14 14 C 1.52996 * 109.47310 * 174.99812 * 13 10 8 15 15 C 1.50699 * 109.47433 * 180.02562 * 14 13 10 16 16 H 1.07999 * 119.99582 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00248 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99824 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46911 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47311 * 119.99705 * 19 17 15 22 22 H 1.48503 * 109.46864 * 239.99754 * 19 17 15 23 23 C 1.46923 * 118.73985 * 53.30967 * 7 6 5 24 24 H 1.08997 * 109.47000 * 299.91933 * 1 2 3 25 25 H 1.09001 * 109.46934 * 59.92319 * 1 2 3 26 26 H 1.09005 * 109.47031 * 179.91697 * 1 2 3 27 27 H 1.09001 * 109.46576 * 180.08131 * 3 2 1 28 28 H 1.08995 * 109.47246 * 300.07427 * 3 2 1 29 29 H 1.08996 * 109.47091 * 60.08059 * 3 2 1 30 30 H 1.09000 * 109.46215 * 298.70016 * 4 2 1 31 31 H 1.08997 * 109.45704 * 58.66561 * 4 2 1 32 32 H 1.08998 * 109.49687 * 181.31562 * 5 4 2 33 33 H 1.09003 * 109.49942 * 301.38469 * 5 4 2 34 34 H 1.09003 * 109.51509 * 185.70345 * 6 5 4 35 35 H 1.09007 * 109.43462 * 65.42304 * 6 5 4 36 36 H 1.00899 * 110.99966 * 59.99880 * 12 10 8 37 37 H 1.00906 * 111.00310 * 183.95601 * 12 10 8 38 38 H 1.08999 * 109.46842 * 294.99900 * 13 10 8 39 39 H 1.08999 * 109.46967 * 54.99875 * 13 10 8 40 40 H 1.09005 * 109.47136 * 300.00285 * 14 13 10 41 41 H 1.09002 * 109.46992 * 59.99600 * 14 13 10 42 42 H 0.96999 * 119.99562 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.59009 * 66.42846 * 23 7 6 44 44 H 1.09006 * 109.58796 * 186.85605 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6950 -1.2660 6 6 4.1055 -1.4216 -0.0332 7 7 3.5046 -0.8291 1.1696 8 6 4.2811 -0.3855 2.1780 9 8 3.7731 0.1062 3.1633 10 6 5.7806 -0.5006 2.0810 11 1 6.0980 -0.2662 1.0649 12 7 6.4057 0.4414 3.0189 13 6 6.2064 -1.9277 2.4317 14 6 7.7131 -2.0787 2.2131 15 6 8.1324 -3.4845 2.5580 16 1 7.3977 -4.1987 2.8994 17 6 9.4540 -3.8587 2.4387 18 7 10.3487 -2.9888 2.0234 19 14 9.9738 -5.6010 2.8669 20 1 8.7868 -6.3779 3.3061 21 1 10.5738 -6.2465 1.6717 22 1 10.9741 -5.5637 3.9639 23 6 2.0413 -0.7239 1.2496 24 1 -0.3633 0.5126 0.8907 25 1 -0.3633 0.5150 -0.8893 26 1 -0.3633 -1.0277 -0.0015 27 1 3.1313 1.4410 -0.0015 28 1 1.6773 1.9566 -0.8893 29 1 1.6796 1.9558 0.8907 30 1 1.6968 -1.7573 -1.2352 31 1 1.6582 -0.2245 -2.1388 32 1 3.9334 -1.1898 -2.1670 33 1 3.9159 0.3389 -1.2546 34 1 5.1896 -1.3160 0.0101 35 1 3.8413 -2.4775 -0.0914 36 1 6.1268 0.2447 3.9685 37 1 7.4105 0.4298 2.9273 38 1 5.9684 -2.1316 3.4757 39 1 5.6741 -2.6329 1.7934 40 1 7.9510 -1.8748 1.1691 41 1 8.2453 -1.3735 2.8515 42 1 11.2785 -3.2521 1.9392 43 1 1.6052 -1.7216 1.2980 44 1 1.7637 -0.1580 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424092703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:22 Heat of formation + Delta-G solvation = -63.169210 kcal Electronic energy + Delta-G solvation = -21683.624843 eV Core-core repulsion = 18634.589124 eV Total energy + Delta-G solvation = -3049.035719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45834 -38.17217 -35.50878 -34.29960 -32.84212 -31.95773 -29.88261 -27.71174 -27.43561 -26.24922 -25.29443 -23.32678 -22.29747 -20.53785 -19.12181 -18.40237 -17.41507 -16.32264 -15.80796 -15.28797 -15.05209 -14.63615 -14.51398 -14.23705 -14.00625 -13.87065 -13.34110 -13.22941 -13.04195 -12.66984 -12.31412 -12.15086 -12.05270 -11.83765 -11.69820 -11.49265 -11.20710 -11.06275 -10.95944 -10.85890 -10.66343 -10.54742 -10.41834 -9.98429 -9.84792 -9.25103 -9.13898 -8.48022 -8.44579 -8.15506 -6.09078 -4.12038 2.96620 3.13460 3.25748 3.33897 3.37877 4.38853 4.44375 4.61098 4.64474 4.85662 4.93288 5.10251 5.19464 5.24269 5.27446 5.35554 5.42562 5.49009 5.56900 5.61189 5.68600 5.73949 5.74765 5.77894 5.82027 5.88215 5.89513 6.02972 6.07651 6.15485 6.29769 6.33786 6.52976 6.66180 6.87634 7.43503 7.51864 7.60669 7.68294 7.88249 7.92835 8.31028 8.49524 8.94150 9.53021 11.01851 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.004266 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.308350 B = 6561.722770 C = 6931.679461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.107 4.107 5 C -0.139 4.139 6 C 0.103 3.897 7 N -0.612 5.612 8 C 0.528 3.472 9 O -0.541 6.541 10 C 0.074 3.926 11 H 0.096 0.904 12 N -0.831 5.831 13 C -0.138 4.138 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.122 3.878 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.345 0.655 37 H 0.353 0.647 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.062 0.938 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.514 5.358 -7.595 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.145 4.145 5 C -0.177 4.177 6 C -0.020 4.020 7 N -0.346 5.346 8 C 0.317 3.683 9 O -0.417 6.417 10 C -0.041 4.041 11 H 0.114 0.886 12 N -0.363 5.363 13 C -0.178 4.178 14 C -0.012 4.012 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.001 4.001 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.984 6.215 -7.477 19.570 hybrid contribution 0.873 -1.933 0.472 2.173 sum -16.111 4.282 -7.005 18.082 Atomic orbital electron populations 1.21800 0.94041 1.01829 1.01970 1.20915 0.95463 0.96247 0.95490 1.21852 1.01776 0.94647 1.01295 1.21578 0.95460 1.00404 0.97065 1.21924 0.95972 1.01846 0.97987 1.21760 0.99357 0.97093 0.83803 1.48016 1.06216 1.61871 1.18505 1.20859 0.89586 0.75916 0.81924 1.90610 1.75545 1.44305 1.31221 1.21509 0.89711 0.94033 0.98847 0.88607 1.58755 1.14192 1.53492 1.09842 1.22398 1.01419 0.92943 1.01040 1.19102 0.87709 0.97255 0.97179 1.21215 0.93358 0.96742 1.44754 0.92687 1.25007 0.96741 0.97383 0.95157 1.69962 1.02150 1.34277 1.46808 0.86539 0.78636 0.84747 0.78118 1.19761 1.20938 1.20952 1.21590 0.80014 1.00093 0.98380 0.92439 0.92416 0.92553 0.92065 0.92945 0.92761 0.91801 0.91821 0.90590 0.91048 0.88732 0.91247 0.84179 0.83144 0.92729 0.92459 0.96378 0.96411 0.92947 0.91957 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.48 37.16 0.32 -0.80 16 2 C -0.08 -0.79 0.77 -154.39 -0.12 -0.91 16 3 C -0.14 -1.48 7.99 37.16 0.30 -1.18 16 4 C -0.11 -0.95 4.71 -26.69 -0.13 -1.08 16 5 C -0.14 -1.35 5.72 -26.84 -0.15 -1.51 16 6 C 0.10 1.23 5.56 -3.93 -0.02 1.21 16 7 N -0.61 -8.55 2.42 -173.03 -0.42 -8.97 16 8 C 0.53 9.15 6.95 -10.98 -0.08 9.07 16 9 O -0.54 -10.90 15.66 5.56 0.09 -10.81 16 10 C 0.07 1.29 2.36 -68.87 -0.16 1.13 16 11 H 0.10 1.59 6.53 -51.93 -0.34 1.25 16 12 N -0.83 -14.71 8.94 -5.66 -0.05 -14.76 16 13 C -0.14 -2.75 4.55 -26.73 -0.12 -2.87 16 14 C 0.02 0.60 4.74 -27.89 -0.13 0.46 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.12 1.49 5.11 -3.71 -0.02 1.48 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.74 6.33 -51.93 -0.33 0.41 16 34 H 0.09 1.23 5.20 -51.93 -0.27 0.96 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.35 6.21 8.58 -39.29 -0.34 5.87 16 37 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.10 7.22 -51.93 -0.37 0.72 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -30.58 337.68 -7.90 -38.48 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.59 Total: 8.02 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.73 Total: -8.06 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.27 Total: -48.91 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.58 -7.90 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424092703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.693 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds