Wall clock time and date at job start Mon Mar 30 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.52167 * 2 1 4 4 C 1.53041 * 109.49707 * 239.91663 * 2 1 3 5 5 C 1.53039 * 109.53647 * 178.68229 * 4 2 1 6 6 C 1.52758 * 109.38439 * 61.24252 * 5 4 2 7 7 N 1.46927 * 109.00682 * 305.58958 * 6 5 4 8 8 C 1.34784 * 120.62995 * 233.58186 * 7 6 5 9 9 O 1.21279 * 119.99925 * 179.71847 * 8 7 6 10 10 C 1.50700 * 119.99961 * 359.72079 * 8 7 6 11 11 H 1.09000 * 109.47153 * 39.99352 * 10 8 7 12 12 N 1.46893 * 109.47248 * 160.00051 * 10 8 7 13 13 C 1.53005 * 109.47080 * 280.00010 * 10 8 7 14 14 C 1.52996 * 109.47310 * 174.99812 * 13 10 8 15 15 C 1.50699 * 109.47433 * 180.02562 * 14 13 10 16 16 H 1.07999 * 119.99582 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00248 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99824 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46911 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47311 * 119.99705 * 19 17 15 22 22 H 1.48503 * 109.46864 * 239.99754 * 19 17 15 23 23 C 1.46923 * 118.73985 * 53.30967 * 7 6 5 24 24 H 1.08997 * 109.47000 * 299.91933 * 1 2 3 25 25 H 1.09001 * 109.46934 * 59.92319 * 1 2 3 26 26 H 1.09005 * 109.47031 * 179.91697 * 1 2 3 27 27 H 1.09001 * 109.46576 * 180.08131 * 3 2 1 28 28 H 1.08995 * 109.47246 * 300.07427 * 3 2 1 29 29 H 1.08996 * 109.47091 * 60.08059 * 3 2 1 30 30 H 1.09000 * 109.46215 * 298.70016 * 4 2 1 31 31 H 1.08997 * 109.45704 * 58.66561 * 4 2 1 32 32 H 1.08998 * 109.49687 * 181.31562 * 5 4 2 33 33 H 1.09003 * 109.49942 * 301.38469 * 5 4 2 34 34 H 1.09003 * 109.51509 * 185.70345 * 6 5 4 35 35 H 1.09007 * 109.43462 * 65.42304 * 6 5 4 36 36 H 1.00899 * 110.99966 * 59.99880 * 12 10 8 37 37 H 1.00906 * 111.00310 * 183.95601 * 12 10 8 38 38 H 1.08999 * 109.46842 * 294.99900 * 13 10 8 39 39 H 1.08999 * 109.46967 * 54.99875 * 13 10 8 40 40 H 1.09005 * 109.47136 * 300.00285 * 14 13 10 41 41 H 1.09002 * 109.46992 * 59.99600 * 14 13 10 42 42 H 0.96999 * 119.99562 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.59009 * 66.42846 * 23 7 6 44 44 H 1.09006 * 109.58796 * 186.85605 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6950 -1.2660 6 6 4.1055 -1.4216 -0.0332 7 7 3.5046 -0.8291 1.1696 8 6 4.2811 -0.3855 2.1780 9 8 3.7731 0.1062 3.1633 10 6 5.7806 -0.5006 2.0810 11 1 6.0980 -0.2662 1.0649 12 7 6.4057 0.4414 3.0189 13 6 6.2064 -1.9277 2.4317 14 6 7.7131 -2.0787 2.2131 15 6 8.1324 -3.4845 2.5580 16 1 7.3977 -4.1987 2.8994 17 6 9.4540 -3.8587 2.4387 18 7 10.3487 -2.9888 2.0234 19 14 9.9738 -5.6010 2.8669 20 1 8.7868 -6.3779 3.3061 21 1 10.5738 -6.2465 1.6717 22 1 10.9741 -5.5637 3.9639 23 6 2.0413 -0.7239 1.2496 24 1 -0.3633 0.5126 0.8907 25 1 -0.3633 0.5150 -0.8893 26 1 -0.3633 -1.0277 -0.0015 27 1 3.1313 1.4410 -0.0015 28 1 1.6773 1.9566 -0.8893 29 1 1.6796 1.9558 0.8907 30 1 1.6968 -1.7573 -1.2352 31 1 1.6582 -0.2245 -2.1388 32 1 3.9334 -1.1898 -2.1670 33 1 3.9159 0.3389 -1.2546 34 1 5.1896 -1.3160 0.0101 35 1 3.8413 -2.4775 -0.0914 36 1 6.1268 0.2447 3.9685 37 1 7.4105 0.4298 2.9273 38 1 5.9684 -2.1316 3.4757 39 1 5.6741 -2.6329 1.7934 40 1 7.9510 -1.8748 1.1691 41 1 8.2453 -1.3735 2.8515 42 1 11.2785 -3.2521 1.9392 43 1 1.6052 -1.7216 1.2980 44 1 1.7637 -0.1580 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424092703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:21 Heat of formation + Delta-G solvation = -82.436988 kcal Electronic energy + Delta-G solvation = -21684.460356 eV Core-core repulsion = 18634.589124 eV Total energy + Delta-G solvation = -3049.871232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61309 -39.30445 -37.12039 -35.37148 -34.80569 -32.87116 -31.70288 -28.99575 -28.21312 -27.41133 -26.68746 -24.91571 -23.18932 -22.24729 -20.33580 -19.35646 -18.84936 -18.24799 -17.11208 -16.53579 -16.29015 -16.02040 -15.77843 -15.50972 -15.23857 -14.98689 -14.61734 -14.58677 -14.22431 -13.98913 -13.74197 -13.51726 -13.05758 -12.94343 -12.85412 -12.71677 -12.59840 -12.50212 -12.37535 -12.00648 -11.83409 -11.77612 -11.68455 -11.38645 -11.27869 -11.20722 -10.62857 -10.56375 -9.70162 -9.56411 -8.21603 -6.31948 1.38700 1.40459 1.52076 1.59228 1.97115 2.39982 3.12155 3.44886 3.69903 3.74881 3.84077 3.86690 4.05003 4.08571 4.21063 4.25192 4.40589 4.51802 4.59523 4.64831 4.72314 4.79742 4.80104 4.88430 4.89500 4.96114 4.99982 5.06391 5.11830 5.13590 5.24550 5.33406 5.39608 5.45982 5.52117 5.61929 5.64085 5.79873 6.04336 6.20762 6.38546 6.45335 6.83127 7.16783 7.37314 8.89382 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.004266 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.308350 B = 6561.722770 C = 6931.679461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C -0.136 4.136 4 C -0.104 4.104 5 C -0.135 4.135 6 C 0.096 3.904 7 N -0.603 5.603 8 C 0.525 3.475 9 O -0.576 6.576 10 C 0.081 3.919 11 H 0.106 0.894 12 N -0.830 5.830 13 C -0.120 4.120 14 C 0.032 3.968 15 C -0.544 4.544 16 H 0.054 0.946 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.280 1.280 23 C 0.117 3.883 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.343 0.657 37 H 0.352 0.648 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.003 0.997 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.838 4.290 -9.055 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C -0.193 4.193 4 C -0.141 4.141 5 C -0.172 4.172 6 C -0.026 4.026 7 N -0.336 5.336 8 C 0.313 3.687 9 O -0.455 6.455 10 C -0.034 4.034 11 H 0.124 0.876 12 N -0.362 5.362 13 C -0.159 4.159 14 C -0.005 4.005 15 C -0.582 4.582 16 H 0.072 0.928 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.206 1.206 23 C -0.005 4.005 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.332 5.137 -8.973 21.047 hybrid contribution 1.277 -1.581 0.904 2.224 sum -17.056 3.555 -8.069 19.200 Atomic orbital electron populations 1.21771 0.92324 1.02674 1.02460 1.20903 0.96736 0.95280 0.94695 1.21831 1.00465 0.95539 1.01515 1.21581 0.94491 1.01061 0.96965 1.21905 0.96808 1.01230 0.97302 1.21959 0.98761 0.98006 0.83920 1.48072 1.06975 1.60383 1.18149 1.20729 0.89469 0.76173 0.82279 1.90592 1.75938 1.46255 1.32726 1.21417 0.90398 0.92349 0.99189 0.87628 1.58766 1.14123 1.53434 1.09834 1.22132 0.98559 0.94881 1.00371 1.18951 0.90290 0.95586 0.95675 1.21618 0.93732 0.98068 1.44733 0.92816 1.25845 0.96828 1.01501 0.94988 1.70068 1.02540 1.36281 1.47708 0.85494 0.78295 0.79824 0.78008 1.19047 1.20135 1.20623 1.21777 0.78774 1.00914 0.99023 0.92942 0.90986 0.91542 0.94013 0.91109 0.94144 0.90769 0.90020 0.88675 0.91796 0.89973 0.90081 0.84397 0.83261 0.93995 0.91609 0.97829 0.98036 0.92716 0.90597 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.48 71.98 0.61 -1.20 16 2 C -0.08 -1.32 0.77 -52.10 -0.04 -1.36 16 3 C -0.14 -2.75 7.99 71.98 0.58 -2.17 16 4 C -0.10 -1.50 4.71 30.62 0.14 -1.35 16 5 C -0.13 -2.29 5.72 30.53 0.17 -2.12 16 6 C 0.10 2.15 5.56 86.22 0.48 2.63 16 7 N -0.60 -16.47 2.42 -819.72 -1.98 -18.45 16 8 C 0.52 18.30 6.95 87.66 0.61 18.91 16 9 O -0.58 -23.69 15.66 -3.03 -0.05 -23.74 16 10 C 0.08 2.88 2.36 44.17 0.10 2.98 16 11 H 0.11 3.52 6.53 -2.39 -0.02 3.51 16 12 N -0.83 -30.05 8.94 -171.81 -1.54 -31.59 16 13 C -0.12 -4.79 4.55 30.59 0.14 -4.65 16 14 C 0.03 1.58 4.74 29.85 0.14 1.73 16 15 C -0.54 -29.86 9.11 25.60 0.23 -29.63 16 16 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 17 C 0.01 0.38 5.46 84.65 0.46 0.85 16 18 N -0.93 -54.08 13.29 21.45 0.28 -53.80 16 19 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.12 2.75 5.11 86.36 0.44 3.19 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.04 1.00 5.97 -2.39 -0.01 0.98 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.21 6.33 -2.39 -0.02 1.19 16 34 H 0.08 2.06 5.20 -2.39 -0.01 2.05 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.34 12.69 8.58 -89.69 -0.77 11.92 16 37 H 0.35 12.76 7.55 -89.69 -0.68 12.08 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.50 7.22 -2.39 -0.02 2.48 16 40 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 41 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 1.92 7.01 -2.38 -0.02 1.91 16 Total: -1.00 -65.47 337.68 2.36 -63.11 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.46 Total: 31.39 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.07 Total: -12.20 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -3.23 Total: -103.84 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.47 2.36 -63.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424092703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.331 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds