Wall clock time and date at job start Mon Mar 30 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47649 * 2 1 4 4 C 1.34784 * 119.99864 * 59.99998 * 3 2 1 5 5 O 1.21283 * 119.99649 * 359.72839 * 4 3 2 6 6 C 1.50694 * 119.99988 * 179.72721 * 4 3 2 7 7 H 1.09000 * 109.47321 * 40.00319 * 6 4 3 8 8 N 1.46900 * 109.47039 * 159.99917 * 6 4 3 9 9 C 1.53002 * 109.47070 * 280.00082 * 6 4 3 10 10 C 1.53004 * 109.46788 * 175.00301 * 9 6 4 11 11 C 1.50707 * 109.46889 * 179.97438 * 10 9 6 12 12 H 1.08003 * 119.99787 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00036 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99885 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99854 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47411 * 90.00087 * 15 13 11 17 17 H 1.48504 * 109.46894 * 209.99898 * 15 13 11 18 18 H 1.48499 * 109.47454 * 330.00026 * 15 13 11 19 19 C 1.53005 * 109.46908 * 120.00342 * 2 1 3 20 20 C 1.53000 * 109.46777 * 179.97438 * 19 2 1 21 21 C 1.53003 * 109.47554 * 299.99928 * 20 19 2 22 22 C 1.52999 * 109.47022 * 59.99882 * 21 20 19 23 23 C 1.53000 * 109.47052 * 300.00425 * 22 21 20 24 24 H 1.08998 * 109.46893 * 59.99537 * 1 2 3 25 25 H 1.09003 * 109.47436 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46641 * 299.99954 * 1 2 3 27 27 H 0.97000 * 120.00740 * 239.72691 * 3 2 1 28 28 H 1.00900 * 110.99611 * 60.00485 * 8 6 4 29 29 H 1.00903 * 111.00270 * 183.94777 * 8 6 4 30 30 H 1.08996 * 109.46833 * 294.99565 * 9 6 4 31 31 H 1.08994 * 109.47098 * 55.00434 * 9 6 4 32 32 H 1.08996 * 109.46833 * 299.99265 * 10 9 6 33 33 H 1.08994 * 109.47192 * 60.00191 * 10 9 6 34 34 H 0.97004 * 119.99887 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.47275 * 299.99425 * 19 2 1 36 36 H 1.08994 * 109.47273 * 59.99809 * 19 2 1 37 37 H 1.09001 * 109.47453 * 179.97438 * 20 19 2 38 38 H 1.09003 * 109.47209 * 59.99813 * 20 19 2 39 39 H 1.09003 * 109.46769 * 300.00154 * 21 20 19 40 40 H 1.08993 * 109.47555 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47277 * 180.02562 * 22 21 20 42 42 H 1.08994 * 109.46996 * 60.00257 * 22 21 20 43 43 H 1.09003 * 109.47663 * 299.99735 * 23 22 21 44 44 H 1.09007 * 109.47067 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.6929 2.2110 1.0109 5 8 0.9915 1.8158 1.9180 6 6 2.2004 3.6300 1.0140 7 1 2.1576 4.0334 0.0023 8 7 1.3636 4.4473 1.9028 9 6 3.6470 3.6531 1.5117 10 6 4.2029 5.0740 1.3975 11 6 5.6276 5.0969 1.8882 12 1 6.0904 4.1887 2.2454 13 6 6.3406 6.2769 1.8803 14 7 5.7772 7.3827 1.4449 15 14 8.1068 6.3051 2.4879 16 1 9.0250 6.0319 1.3533 17 1 8.4118 7.6408 3.0609 18 1 8.2876 5.2653 3.5325 19 6 2.0399 -0.7214 1.2493 20 6 3.5699 -0.7219 1.2489 21 6 4.0795 -1.4434 -0.0004 22 6 3.5695 -0.7222 -1.2496 23 6 2.0395 -0.7216 -1.2492 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 2.5794 1.6973 -0.7254 28 1 1.3866 4.0934 2.8474 29 1 1.6435 5.4163 1.8729 30 1 3.6780 3.3335 2.5533 31 1 4.2504 2.9771 0.9059 32 1 4.1719 5.3936 0.3559 33 1 3.5995 5.7500 2.0032 34 1 6.2787 8.2130 1.4396 35 1 1.6767 -0.2075 2.1392 36 1 1.6766 -1.7489 1.2492 37 1 3.9334 -1.2354 2.1391 38 1 3.9337 0.3057 1.2487 39 1 3.7158 -2.4710 -0.0002 40 1 5.1694 -1.4434 -0.0009 41 1 3.9321 -1.2364 -2.1396 42 1 3.9332 0.3053 -1.2498 43 1 1.6757 -1.7492 -1.2491 44 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424096002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:32 Heat of formation + Delta-G solvation = -94.359971 kcal Electronic energy + Delta-G solvation = -21765.061698 eV Core-core repulsion = 18714.673446 eV Total energy + Delta-G solvation = -3050.388251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60812 -39.19141 -36.97804 -34.86223 -34.82451 -32.22044 -31.76104 -31.62930 -28.11740 -27.33507 -25.70008 -23.63570 -22.73613 -22.04805 -21.13531 -20.02782 -18.90109 -18.09930 -16.97786 -16.58033 -16.10812 -16.09079 -15.79932 -15.53302 -15.09995 -14.81675 -14.67233 -14.45294 -14.20617 -13.95843 -13.48668 -13.30519 -13.16297 -13.00875 -12.91976 -12.75951 -12.63669 -12.54105 -12.33688 -11.97183 -11.81481 -11.66312 -11.47448 -11.30599 -11.15280 -11.05037 -10.56871 -10.37763 -9.90784 -9.60602 -8.22024 -6.32496 1.38723 1.39592 1.50176 1.73228 2.23609 2.39591 3.11645 3.64861 3.76493 3.84470 3.85555 3.95201 4.13959 4.22902 4.26921 4.28615 4.50671 4.52544 4.61346 4.66408 4.75406 4.79896 4.84373 4.86932 4.94178 5.05055 5.08223 5.17317 5.21675 5.27038 5.35366 5.41895 5.45575 5.47192 5.52545 5.64941 5.75980 5.80077 6.09298 6.20758 6.47904 6.68070 6.82810 7.36714 7.37736 8.88799 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021223 B = 0.004839 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.988617 B = 5785.430572 C = 6585.769684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 N -0.710 5.710 4 C 0.530 3.470 5 O -0.560 6.560 6 C 0.078 3.922 7 H 0.103 0.897 8 N -0.829 5.829 9 C -0.116 4.116 10 C 0.030 3.970 11 C -0.544 4.544 12 H 0.053 0.947 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.958 3.042 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.113 4.113 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.407 0.593 28 H 0.343 0.657 29 H 0.350 0.650 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 -17.955 -7.084 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.090 3.910 3 N -0.363 5.363 4 C 0.316 3.684 5 O -0.439 6.439 6 C -0.038 4.038 7 H 0.121 0.879 8 N -0.360 5.360 9 C -0.156 4.156 10 C -0.007 4.007 11 C -0.582 4.582 12 H 0.072 0.928 13 C -0.192 4.192 14 N -0.567 5.567 15 Si 0.783 3.217 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.150 4.150 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.243 0.757 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.456 -18.295 -6.946 20.941 hybrid contribution 2.081 1.035 0.781 2.452 sum -5.375 -17.259 -6.165 19.099 Atomic orbital electron populations 1.22159 0.94586 1.02848 1.02125 1.20442 0.93670 0.80452 0.96470 1.46079 1.53261 1.11947 1.25030 1.20507 0.79009 0.87249 0.81623 1.90563 1.38674 1.77348 1.37286 1.21438 0.91375 0.91402 0.99563 0.87870 1.58767 1.56910 1.06551 1.13756 1.22076 0.94333 0.99313 0.99860 1.18965 0.94595 0.91527 0.95595 1.21605 0.99189 0.94762 1.42675 0.92845 1.25849 1.02634 0.95295 0.95407 1.70064 1.38720 1.00037 1.47854 0.85551 0.79850 0.77498 0.78789 1.19620 1.20759 1.19300 1.21885 0.95796 1.00667 0.98067 1.21478 0.95421 1.00056 0.98685 1.21509 1.00254 0.99587 0.93797 1.21567 0.95148 1.00834 0.98366 1.21814 0.95950 1.01679 0.95583 0.92264 0.90235 0.93336 0.75687 0.84427 0.83497 0.94056 0.91880 0.98068 0.98046 0.92723 0.93060 0.89996 0.92587 0.94076 0.90714 0.92106 0.89949 0.92686 0.88769 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.40 71.98 0.60 -2.86 16 2 C 0.17 3.67 0.66 3.61 0.00 3.67 16 3 N -0.71 -17.46 4.05 -422.92 -1.71 -19.17 16 4 C 0.53 16.99 6.50 87.65 0.57 17.56 16 5 O -0.56 -20.99 12.46 -3.04 -0.04 -21.03 16 6 C 0.08 2.64 3.21 44.17 0.14 2.78 16 7 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 8 N -0.83 -29.19 8.94 -171.81 -1.54 -30.72 16 9 C -0.12 -4.58 4.78 30.60 0.15 -4.44 16 10 C 0.03 1.50 4.74 29.85 0.14 1.64 16 11 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 12 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 13 C 0.01 0.37 5.46 84.65 0.46 0.83 16 14 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 15 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 C -0.13 -2.93 4.52 30.60 0.14 -2.79 16 20 C -0.12 -2.71 5.77 30.60 0.18 -2.54 16 21 C -0.11 -1.95 5.92 30.60 0.18 -1.77 16 22 C -0.12 -1.84 5.75 30.59 0.18 -1.67 16 23 C -0.11 -1.63 4.78 30.59 0.15 -1.48 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.40 6.16 -2.38 -0.01 1.38 16 27 H 0.41 8.64 7.31 -92.71 -0.68 7.96 16 28 H 0.34 12.35 8.58 -89.69 -0.77 11.58 16 29 H 0.35 12.56 7.55 -89.69 -0.68 11.88 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.89 16 35 H 0.05 1.56 6.18 -2.39 -0.01 1.55 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.14 7.60 -2.39 -0.02 1.12 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.96 6.86 -2.39 -0.02 0.94 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -64.69 338.18 1.02 -63.67 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -1.13 Total: 36.92 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 3.12 Total: -20.92 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -2.96 Total: -104.18 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.04 Total: -21.03 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -64.69 1.02 -63.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424096002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.687 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds