Wall clock time and date at job start Mon Mar 30 2020 01:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.46360 * 2 1 4 4 C 1.53035 * 109.46286 * 119.97431 * 2 1 3 5 5 C 1.53188 * 109.31549 * 181.38118 * 4 2 1 6 6 N 1.46924 * 108.77774 * 305.36662 * 5 4 2 7 7 C 1.34781 * 120.63336 * 233.58653 * 6 5 4 8 8 O 1.21278 * 119.99531 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00261 * 180.02562 * 7 6 5 10 10 H 1.09005 * 109.47168 * 319.99959 * 9 7 6 11 11 N 1.46901 * 109.47231 * 199.99856 * 9 7 6 12 12 C 1.53006 * 109.47471 * 79.99562 * 9 7 6 13 13 C 1.52999 * 109.46997 * 185.00271 * 12 9 7 14 14 C 1.50706 * 109.46573 * 180.02562 * 13 12 9 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 C 1.46928 * 118.73749 * 53.85501 * 6 5 4 23 23 C 1.53042 * 109.45912 * 240.04223 * 2 1 3 24 24 H 1.09003 * 109.46837 * 300.02762 * 1 2 3 25 25 H 1.08999 * 109.47689 * 60.02256 * 1 2 3 26 26 H 1.08999 * 109.47719 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47496 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46876 * 299.97531 * 3 2 1 29 29 H 1.09003 * 109.46980 * 59.97094 * 3 2 1 30 30 H 1.09009 * 109.49653 * 61.43057 * 4 2 1 31 31 H 1.08998 * 109.50077 * 301.33443 * 4 2 1 32 32 H 1.09001 * 109.59058 * 185.57664 * 5 4 2 33 33 H 1.09007 * 109.70495 * 65.22127 * 5 4 2 34 34 H 1.00892 * 110.99802 * 299.99727 * 11 9 7 35 35 H 1.00896 * 111.00006 * 63.95285 * 11 9 7 36 36 H 1.09000 * 109.46866 * 65.00059 * 12 9 7 37 37 H 1.09001 * 109.46611 * 305.00176 * 12 9 7 38 38 H 1.09000 * 109.47486 * 60.00167 * 13 12 9 39 39 H 1.09001 * 109.47362 * 299.99445 * 13 12 9 40 40 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.58714 * 65.93184 * 22 6 5 42 42 H 1.08999 * 109.58630 * 186.35454 * 22 6 5 43 43 H 1.09002 * 109.49576 * 298.56943 * 23 2 1 44 44 H 1.09003 * 109.49997 * 58.62386 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5713 -0.6888 1.2640 6 7 4.0678 -1.2489 -0.0003 7 6 4.9620 -2.2574 -0.0005 8 8 5.3648 -2.7107 1.0497 9 6 5.4621 -2.8207 -1.3056 10 1 4.6361 -2.8845 -2.0141 11 7 6.0179 -4.1615 -1.0793 12 6 6.5503 -1.9065 -1.8722 13 6 6.9700 -2.4094 -3.2549 14 6 8.0423 -1.5092 -3.8126 15 1 8.3865 -0.6606 -3.2402 16 6 8.5802 -1.7663 -5.0559 17 7 8.1571 -2.7966 -5.7552 18 14 9.9099 -0.6509 -5.7468 19 1 11.2441 -1.1597 -5.3390 20 1 9.8192 -0.6321 -7.2290 21 1 9.7233 0.7256 -5.2220 22 6 3.5754 -0.6847 -1.2645 23 6 2.0398 -0.7206 -1.2502 24 1 -0.3633 0.5143 0.8898 25 1 -0.3634 0.5135 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1297 1.4428 0.0005 28 1 1.6766 1.9562 -0.8903 29 1 1.6759 1.9565 0.8898 30 1 1.6977 -1.7558 1.2380 31 1 1.6573 -0.2210 2.1398 32 1 3.9417 -1.2848 2.0981 33 1 3.9164 0.3399 1.3684 34 1 6.7857 -4.1290 -0.4256 35 1 5.3031 -4.8011 -0.7661 36 1 7.4131 -1.9126 -1.2061 37 1 6.1638 -0.8908 -1.9569 38 1 6.1072 -2.4033 -3.9211 39 1 7.3565 -3.4250 -3.1703 40 1 8.5353 -2.9771 -6.6300 41 1 3.9187 0.3451 -1.3633 42 1 3.9485 -1.2781 -2.0992 43 1 1.6976 -1.7554 -1.2386 44 1 1.6565 -0.2208 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424117991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:01 Heat of formation + Delta-G solvation = -62.032055 kcal Electronic energy + Delta-G solvation = -21589.556823 eV Core-core repulsion = 18540.570415 eV Total energy + Delta-G solvation = -3048.986408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52702 -38.45858 -35.27086 -34.44207 -32.80280 -31.27422 -30.08583 -28.66029 -27.55233 -26.35920 -24.19797 -23.47078 -22.51331 -20.45404 -19.51704 -18.16585 -17.12737 -16.32715 -15.83745 -15.51747 -15.06084 -14.96744 -14.49307 -14.46122 -14.36400 -13.95608 -13.51617 -13.23083 -12.69548 -12.30941 -12.21653 -12.11795 -12.03563 -11.90639 -11.77676 -11.53352 -11.32563 -10.97949 -10.88491 -10.64782 -10.61483 -10.50994 -10.44034 -9.99073 -9.77093 -9.34911 -8.99253 -8.55507 -8.32866 -8.17645 -5.93225 -3.95305 2.80626 3.10569 3.35347 3.41621 3.44401 4.42771 4.48863 4.50666 4.55202 4.78830 4.95286 4.98272 5.14562 5.17610 5.20114 5.40567 5.42603 5.43652 5.45300 5.49981 5.58772 5.64336 5.72137 5.75167 5.79017 5.85405 5.85969 5.92003 6.04258 6.06297 6.25907 6.44133 6.56715 6.68788 7.09215 7.39231 7.56697 7.76645 7.82250 7.96643 8.13969 8.32948 8.49260 9.12651 9.67869 11.17672 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.004461 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.247140 B = 6275.561583 C = 6889.777854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.121 4.121 5 C 0.107 3.893 6 N -0.609 5.609 7 C 0.485 3.515 8 O -0.558 6.558 9 C 0.077 3.923 10 H 0.098 0.902 11 N -0.807 5.807 12 C -0.096 4.096 13 C 0.032 3.968 14 C -0.522 4.522 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.100 3.900 23 C -0.124 4.124 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.347 0.653 35 H 0.333 0.667 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.012 0.988 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.010 5.808 11.599 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.204 4.204 4 C -0.159 4.159 5 C -0.016 4.016 6 N -0.343 5.343 7 C 0.273 3.727 8 O -0.436 6.436 9 C -0.038 4.038 10 H 0.116 0.884 11 N -0.335 5.335 12 C -0.134 4.134 13 C -0.005 4.005 14 C -0.560 4.560 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.023 4.023 23 C -0.163 4.163 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.573 5.467 11.196 19.944 hybrid contribution 0.329 0.851 0.553 1.067 sum -15.244 6.318 11.750 20.257 Atomic orbital electron populations 1.21855 0.94468 1.01694 1.01702 1.20532 0.95385 0.95585 0.95140 1.21996 1.01676 0.95046 1.01727 1.21956 0.95365 1.00903 0.97676 1.21574 0.93514 0.98990 0.87543 1.48212 1.43533 1.35598 1.06915 1.22723 0.77581 0.78751 0.93681 1.90620 1.58123 1.60685 1.34165 1.21862 0.99417 0.90990 0.91550 0.88442 1.59020 1.13162 1.06537 1.54772 1.21678 0.94952 0.95993 1.00807 1.19013 0.95897 0.97501 0.88115 1.21276 1.20976 1.11816 1.01963 0.93014 1.24982 0.96859 0.95330 0.97086 1.69973 1.42829 1.27911 1.12465 0.86662 0.82471 0.81138 0.78100 1.20728 1.21293 1.20013 1.22016 0.93850 1.00084 0.86301 1.22076 0.95300 1.01103 0.97780 0.92755 0.92521 0.92755 0.91973 0.92454 0.92775 0.91675 0.91037 0.89442 0.91614 0.83878 0.85542 0.92883 0.92794 0.96927 0.94671 0.93109 0.90780 0.88471 0.91458 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.47 37.15 0.31 -0.72 16 2 C -0.07 -0.57 0.77 -154.47 -0.12 -0.68 16 3 C -0.15 -1.20 7.71 37.16 0.29 -0.92 16 4 C -0.12 -1.13 4.90 -26.62 -0.13 -1.26 16 5 C 0.11 1.25 5.96 -3.71 -0.02 1.23 16 6 N -0.61 -8.22 2.97 -172.51 -0.51 -8.73 16 7 C 0.48 8.03 6.94 -10.99 -0.08 7.95 16 8 O -0.56 -10.67 15.66 5.56 0.09 -10.58 16 9 C 0.08 1.34 2.30 -68.86 -0.16 1.18 16 10 H 0.10 1.60 6.55 -51.93 -0.34 1.26 16 11 N -0.81 -14.02 8.44 -5.65 -0.05 -14.06 16 12 C -0.10 -1.96 4.54 -26.73 -0.12 -2.08 16 13 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.10 1.18 5.14 -3.49 -0.02 1.16 16 23 C -0.12 -1.18 4.92 -26.39 -0.13 -1.31 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.57 4.97 -51.93 -0.26 0.31 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16 33 H 0.07 0.71 6.70 -51.93 -0.35 0.37 16 34 H 0.35 6.13 8.58 -39.30 -0.34 5.80 16 35 H 0.33 5.05 9.06 -39.29 -0.36 4.70 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 1.04 7.18 -51.93 -0.37 0.67 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.84 6.69 -51.93 -0.35 0.49 16 42 H 0.10 1.25 5.17 -51.93 -0.27 0.98 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -31.72 337.57 -7.98 -39.69 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.59 Total: 6.26 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.72 Total: -8.25 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.18 Total: -48.90 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.72 -7.98 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424117991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.338 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds