Wall clock time and date at job start Mon Mar 30 2020 01:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.46360 * 2 1 4 4 C 1.53035 * 109.46286 * 119.97431 * 2 1 3 5 5 C 1.53188 * 109.31549 * 181.38118 * 4 2 1 6 6 N 1.46924 * 108.77774 * 305.36662 * 5 4 2 7 7 C 1.34781 * 120.63336 * 233.58653 * 6 5 4 8 8 O 1.21278 * 119.99531 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00261 * 180.02562 * 7 6 5 10 10 H 1.09005 * 109.47168 * 319.99959 * 9 7 6 11 11 N 1.46901 * 109.47231 * 199.99856 * 9 7 6 12 12 C 1.53006 * 109.47471 * 79.99562 * 9 7 6 13 13 C 1.52999 * 109.46997 * 185.00271 * 12 9 7 14 14 C 1.50706 * 109.46573 * 180.02562 * 13 12 9 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 C 1.46928 * 118.73749 * 53.85501 * 6 5 4 23 23 C 1.53042 * 109.45912 * 240.04223 * 2 1 3 24 24 H 1.09003 * 109.46837 * 300.02762 * 1 2 3 25 25 H 1.08999 * 109.47689 * 60.02256 * 1 2 3 26 26 H 1.08999 * 109.47719 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47496 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46876 * 299.97531 * 3 2 1 29 29 H 1.09003 * 109.46980 * 59.97094 * 3 2 1 30 30 H 1.09009 * 109.49653 * 61.43057 * 4 2 1 31 31 H 1.08998 * 109.50077 * 301.33443 * 4 2 1 32 32 H 1.09001 * 109.59058 * 185.57664 * 5 4 2 33 33 H 1.09007 * 109.70495 * 65.22127 * 5 4 2 34 34 H 1.00892 * 110.99802 * 299.99727 * 11 9 7 35 35 H 1.00896 * 111.00006 * 63.95285 * 11 9 7 36 36 H 1.09000 * 109.46866 * 65.00059 * 12 9 7 37 37 H 1.09001 * 109.46611 * 305.00176 * 12 9 7 38 38 H 1.09000 * 109.47486 * 60.00167 * 13 12 9 39 39 H 1.09001 * 109.47362 * 299.99445 * 13 12 9 40 40 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.58714 * 65.93184 * 22 6 5 42 42 H 1.08999 * 109.58630 * 186.35454 * 22 6 5 43 43 H 1.09002 * 109.49576 * 298.56943 * 23 2 1 44 44 H 1.09003 * 109.49997 * 58.62386 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5713 -0.6888 1.2640 6 7 4.0678 -1.2489 -0.0003 7 6 4.9620 -2.2574 -0.0005 8 8 5.3648 -2.7107 1.0497 9 6 5.4621 -2.8207 -1.3056 10 1 4.6361 -2.8845 -2.0141 11 7 6.0179 -4.1615 -1.0793 12 6 6.5503 -1.9065 -1.8722 13 6 6.9700 -2.4094 -3.2549 14 6 8.0423 -1.5092 -3.8126 15 1 8.3865 -0.6606 -3.2402 16 6 8.5802 -1.7663 -5.0559 17 7 8.1571 -2.7966 -5.7552 18 14 9.9099 -0.6509 -5.7468 19 1 11.2441 -1.1597 -5.3390 20 1 9.8192 -0.6321 -7.2290 21 1 9.7233 0.7256 -5.2220 22 6 3.5754 -0.6847 -1.2645 23 6 2.0398 -0.7206 -1.2502 24 1 -0.3633 0.5143 0.8898 25 1 -0.3634 0.5135 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1297 1.4428 0.0005 28 1 1.6766 1.9562 -0.8903 29 1 1.6759 1.9565 0.8898 30 1 1.6977 -1.7558 1.2380 31 1 1.6573 -0.2210 2.1398 32 1 3.9417 -1.2848 2.0981 33 1 3.9164 0.3399 1.3684 34 1 6.7857 -4.1290 -0.4256 35 1 5.3031 -4.8011 -0.7661 36 1 7.4131 -1.9126 -1.2061 37 1 6.1638 -0.8908 -1.9569 38 1 6.1072 -2.4033 -3.9211 39 1 7.3565 -3.4250 -3.1703 40 1 8.5353 -2.9771 -6.6300 41 1 3.9187 0.3451 -1.3633 42 1 3.9485 -1.2781 -2.0992 43 1 1.6976 -1.7554 -1.2386 44 1 1.6565 -0.2208 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424117991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:00 Heat of formation + Delta-G solvation = -82.855190 kcal Electronic energy + Delta-G solvation = -21590.459782 eV Core-core repulsion = 18540.570415 eV Total energy + Delta-G solvation = -3049.889367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65027 -39.50383 -36.88641 -35.46045 -34.82544 -32.18219 -31.93869 -29.60510 -28.17307 -28.01757 -25.74505 -24.37515 -23.79018 -22.12827 -20.70155 -19.22222 -18.44253 -18.17175 -17.14338 -16.97661 -16.42662 -16.05470 -15.81542 -15.48338 -15.27862 -15.05442 -14.82385 -14.44904 -14.25791 -13.82422 -13.60084 -13.35942 -12.88863 -12.80970 -12.79902 -12.69978 -12.55867 -12.49853 -12.23965 -12.15473 -11.78561 -11.67816 -11.63053 -11.35282 -11.26193 -11.13820 -10.95185 -10.48268 -9.64164 -9.63048 -8.12965 -6.23254 1.42375 1.43763 1.47734 1.54450 1.98314 2.45335 3.20163 3.42862 3.62445 3.71651 3.80767 3.83923 4.04291 4.10755 4.27523 4.28241 4.30680 4.44058 4.65476 4.70374 4.75550 4.77595 4.82186 4.88575 4.92311 4.93753 5.05663 5.06608 5.10106 5.20978 5.23425 5.33528 5.43560 5.54901 5.57428 5.57615 5.83879 5.98489 6.06892 6.30370 6.32686 6.48680 6.94760 7.05233 7.44873 8.98274 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.004461 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.247140 B = 6275.561583 C = 6889.777854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.114 4.114 5 C 0.104 3.896 6 N -0.601 5.601 7 C 0.486 3.514 8 O -0.587 6.587 9 C 0.086 3.914 10 H 0.107 0.893 11 N -0.818 5.818 12 C -0.080 4.080 13 C 0.041 3.959 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.095 3.905 23 C -0.120 4.120 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.345 0.655 35 H 0.345 0.655 36 H 0.040 0.960 37 H 0.066 0.934 38 H -0.005 1.005 39 H 0.005 0.995 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.051 7.655 11.878 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.152 4.152 5 C -0.019 4.019 6 N -0.333 5.333 7 C 0.273 3.727 8 O -0.468 6.468 9 C -0.030 4.030 10 H 0.125 0.875 11 N -0.347 5.347 12 C -0.119 4.119 13 C 0.004 3.996 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.783 3.217 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.027 4.027 23 C -0.158 4.158 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.014 0.986 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.652 7.341 11.479 21.516 hybrid contribution 0.619 0.278 0.466 0.823 sum -16.034 7.618 11.945 21.396 Atomic orbital electron populations 1.21813 0.93167 1.01844 1.02516 1.20526 0.96340 0.95577 0.93926 1.21977 1.00906 0.94745 1.02629 1.21920 0.93280 1.00857 0.99123 1.21733 0.95269 0.98985 0.85866 1.48262 1.42262 1.34320 1.08457 1.22380 0.78230 0.79481 0.92627 1.90607 1.59523 1.61920 1.34753 1.21639 0.98541 0.90443 0.92367 0.87495 1.59003 1.13725 1.07004 1.54948 1.21393 0.95591 0.97173 0.97728 1.18809 0.94588 0.95683 0.90492 1.21707 1.21721 1.12276 1.02439 0.92707 1.25874 0.99232 0.96806 0.97490 1.70102 1.44270 1.29634 1.12920 0.85552 0.79217 0.79454 0.77429 1.20275 1.20671 1.18760 1.22171 0.95619 1.00015 0.84920 1.22064 0.93306 1.01295 0.99156 0.91818 0.91877 0.92965 0.93094 0.91808 0.91716 0.92552 0.89098 0.91232 0.90387 0.84196 0.84153 0.94137 0.91575 0.98617 0.97678 0.92917 0.89923 0.89770 0.91946 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.47 71.98 0.61 -1.00 16 2 C -0.06 -0.92 0.77 -52.16 -0.04 -0.96 16 3 C -0.15 -1.97 7.71 71.98 0.56 -1.41 16 4 C -0.11 -1.89 4.90 30.67 0.15 -1.74 16 5 C 0.10 2.30 5.96 86.36 0.51 2.81 16 6 N -0.60 -15.72 2.97 -818.09 -2.43 -18.15 16 7 C 0.49 16.02 6.94 87.65 0.61 16.63 16 8 O -0.59 -22.60 15.66 -3.02 -0.05 -22.65 16 9 C 0.09 2.98 2.30 44.17 0.10 3.08 16 10 H 0.11 3.51 6.55 -2.38 -0.02 3.49 16 11 N -0.82 -28.95 8.44 -171.79 -1.45 -30.40 16 12 C -0.08 -3.33 4.54 30.60 0.14 -3.19 16 13 C 0.04 2.17 4.86 29.85 0.15 2.31 16 14 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 15 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 16 C 0.00 0.22 5.46 84.66 0.46 0.69 16 17 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 18 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 C 0.09 2.11 5.14 86.50 0.44 2.55 16 23 C -0.12 -2.05 4.92 30.82 0.15 -1.90 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.80 4.97 -2.39 -0.01 0.79 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.82 7.01 -2.39 -0.02 1.80 16 33 H 0.08 1.56 6.70 -2.38 -0.02 1.54 16 34 H 0.34 12.49 8.58 -89.70 -0.77 11.72 16 35 H 0.35 10.58 9.06 -89.70 -0.81 9.77 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 2.54 7.18 -2.39 -0.02 2.52 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 40 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.08 1.73 6.69 -2.39 -0.02 1.71 16 42 H 0.08 2.10 5.17 -2.39 -0.01 2.09 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -67.99 337.57 1.87 -66.12 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.59 Total: 27.76 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.07 Total: -12.80 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -3.59 Total: -104.82 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.99 1.87 -66.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424117991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.733 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds