Wall clock time and date at job start Mon Mar 30 2020 01:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.05492 * 2 1 4 4 C 1.54266 * 110.03079 * 121.41416 * 2 1 3 5 5 C 1.54894 * 104.31305 * 95.60642 * 4 2 1 6 6 C 1.55238 * 102.58338 * 37.93170 * 5 4 2 7 7 C 1.53869 * 110.02962 * 238.58044 * 2 1 3 8 8 H 1.08995 * 110.04023 * 0.05001 * 7 2 1 9 9 N 1.46506 * 110.02971 * 121.43285 * 7 2 1 10 10 C 1.34780 * 119.99919 * 204.99404 * 9 7 2 11 11 O 1.21276 * 119.99834 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99769 * 179.97438 * 10 9 7 13 13 H 1.08996 * 109.47453 * 320.00760 * 12 10 9 14 14 N 1.46900 * 109.47278 * 200.00251 * 12 10 9 15 15 C 1.53002 * 109.47070 * 80.00852 * 12 10 9 16 16 C 1.52998 * 109.47418 * 184.99971 * 15 12 10 17 17 C 1.50704 * 109.47029 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00331 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99822 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99945 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47436 * 89.99957 * 21 19 17 23 23 H 1.48503 * 109.46945 * 210.00178 * 21 19 17 24 24 H 1.48505 * 109.47188 * 329.99620 * 21 19 17 25 25 H 1.08999 * 109.47517 * 300.04046 * 1 2 3 26 26 H 1.08997 * 109.47176 * 60.03965 * 1 2 3 27 27 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46711 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46911 * 299.96232 * 3 2 1 30 30 H 1.08994 * 109.47252 * 59.95945 * 3 2 1 31 31 H 1.09002 * 110.48629 * 214.35395 * 4 2 1 32 32 H 1.08998 * 110.48744 * 336.86299 * 4 2 1 33 33 H 1.08996 * 110.75388 * 156.31523 * 5 4 2 34 34 H 1.08993 * 110.76071 * 279.69749 * 5 4 2 35 35 H 1.09005 * 110.46917 * 203.39204 * 6 5 4 36 36 H 1.09007 * 110.58541 * 80.83124 * 6 5 4 37 37 H 0.97000 * 120.00151 * 24.99743 * 9 7 2 38 38 H 1.00901 * 111.00305 * 176.04903 * 14 12 10 39 39 H 1.00903 * 111.00317 * 300.00717 * 14 12 10 40 40 H 1.09004 * 109.46860 * 305.00185 * 15 12 10 41 41 H 1.09004 * 109.47027 * 64.99188 * 15 12 10 42 42 H 1.09006 * 109.46607 * 299.99635 * 16 15 12 43 43 H 1.08992 * 109.47230 * 59.99482 * 16 15 12 44 44 H 0.97001 * 119.99929 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3273 -2.1915 0.7225 6 6 2.8874 -1.9407 -0.7034 7 6 2.0570 -0.7536 -1.2337 8 1 1.2229 -1.1186 -1.8329 9 7 2.9033 0.1310 -2.0384 10 6 3.0601 -0.1021 -3.3566 11 8 2.5003 -1.0439 -3.8766 12 6 3.9301 0.8082 -4.1845 13 1 3.7735 1.8414 -3.8744 14 7 3.5787 0.6642 -5.6035 15 6 5.3993 0.4322 -3.9823 16 6 6.2886 1.4329 -4.7230 17 6 7.7358 1.0627 -4.5233 18 1 7.9953 0.1998 -3.9280 19 6 8.7284 1.8251 -5.1015 20 7 8.4123 2.8751 -5.8278 21 14 10.5221 1.3660 -4.8546 22 1 10.9491 0.4395 -5.9336 23 1 11.3575 2.5931 -4.8965 24 1 10.6860 0.7006 -3.5371 25 1 -0.3634 0.5144 0.8896 26 1 -0.3633 0.5132 -0.8903 27 1 -0.3634 -1.0277 0.0005 28 1 3.1446 1.4261 0.0005 29 1 1.6971 1.9545 -0.8903 30 1 1.6961 1.9550 0.8896 31 1 2.9811 -0.3000 1.5967 32 1 1.3070 -0.7675 2.0264 33 1 3.0658 -2.6936 1.3475 34 1 1.4020 -2.7658 0.6787 35 1 2.7401 -2.8198 -1.3309 36 1 3.9443 -1.6775 -0.6593 37 1 3.3508 0.8845 -1.6225 38 1 4.1033 1.3109 -6.1734 39 1 3.7154 -0.2857 -5.9153 40 1 5.6367 0.4531 -2.9186 41 1 5.5752 -0.5697 -4.3740 42 1 6.0512 1.4118 -5.7867 43 1 6.1127 2.4346 -4.3313 44 1 9.1107 3.4117 -6.2342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424119085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:07 Heat of formation + Delta-G solvation = -67.898314 kcal Electronic energy + Delta-G solvation = -21273.159737 eV Core-core repulsion = 18223.918949 eV Total energy + Delta-G solvation = -3049.240788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33496 -38.50804 -35.40753 -33.60807 -32.83476 -32.39081 -29.87125 -28.25226 -27.60247 -26.17400 -24.65621 -23.50772 -21.08785 -20.56902 -19.69523 -18.89679 -17.32864 -16.32373 -16.16622 -15.37929 -14.97252 -14.76693 -14.41756 -14.26856 -13.98514 -13.66509 -13.33631 -13.13083 -12.94857 -12.83266 -12.38462 -12.25270 -12.04321 -11.72325 -11.57523 -11.21207 -11.08137 -11.00227 -10.90792 -10.74972 -10.73816 -10.67660 -10.61100 -9.98130 -9.86906 -9.27070 -9.16830 -8.83701 -8.43881 -8.15411 -6.08527 -4.11585 3.01111 3.27050 3.33688 3.36127 3.38057 4.24743 4.39355 4.41754 4.60076 5.00641 5.12039 5.13931 5.16629 5.17863 5.23200 5.27889 5.40933 5.47977 5.50847 5.56791 5.61490 5.66782 5.74372 5.75863 5.80152 5.86468 5.93423 6.04266 6.11533 6.18063 6.23239 6.30432 6.53738 6.71775 6.88710 7.47426 7.53017 7.62656 7.78808 7.88667 7.93600 8.31466 8.56354 8.94396 9.53298 11.02391 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.004064 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.267819 B = 6887.597806 C = 7333.251647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C -0.147 4.147 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.150 3.850 8 H 0.090 0.910 9 N -0.730 5.730 10 C 0.524 3.476 11 O -0.541 6.541 12 C 0.074 3.926 13 H 0.094 0.906 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.353 0.647 39 H 0.345 0.655 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 -4.651 13.691 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.175 4.175 7 C 0.045 3.955 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.311 3.689 11 O -0.416 6.416 12 C -0.041 4.041 13 H 0.112 0.888 14 N -0.362 5.362 15 C -0.176 4.176 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.240 0.760 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.949 -4.949 13.407 20.681 hybrid contribution 2.361 -0.070 0.169 2.368 sum -12.588 -5.019 13.576 19.182 Atomic orbital electron populations 1.21885 0.93759 1.01917 1.01892 1.21407 0.96060 0.95620 0.94588 1.21918 1.00928 0.95228 1.02386 1.22489 1.00975 0.95358 0.96447 1.22506 1.00832 0.96630 0.96131 1.22870 1.00199 0.98446 0.95987 1.21603 0.93392 0.89491 0.91012 0.89226 1.46412 1.50855 1.32438 1.08849 1.20897 0.80590 0.85480 0.81943 1.90615 1.48097 1.31070 1.71862 1.21472 0.93825 0.98684 0.90147 0.88775 1.58741 1.64141 1.11819 1.01545 1.22369 0.92220 1.01404 1.01639 1.19105 0.93557 0.93465 0.95179 1.21183 0.91188 1.12032 1.31763 0.92745 1.25010 0.99210 0.94975 0.95098 1.69952 1.33094 1.16831 1.33338 0.86587 0.84860 0.77929 0.78604 1.20616 1.21146 1.19892 0.92436 0.92434 0.92414 0.92120 0.91845 0.92140 0.91262 0.91475 0.91409 0.91469 0.91248 0.90963 0.76016 0.83151 0.84174 0.92644 0.92730 0.96400 0.96351 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.15 37.16 0.30 -0.84 16 2 C -0.08 -0.69 0.94 -153.39 -0.14 -0.84 16 3 C -0.15 -1.27 7.05 37.16 0.26 -1.01 16 4 C -0.12 -0.94 5.89 -25.07 -0.15 -1.09 16 5 C -0.12 -1.08 6.94 -24.55 -0.17 -1.25 16 6 C -0.14 -1.56 6.54 -24.88 -0.16 -1.73 16 7 C 0.15 1.78 2.88 -66.81 -0.19 1.59 16 8 H 0.09 1.23 7.09 -51.93 -0.37 0.86 16 9 N -0.73 -9.70 4.49 -52.72 -0.24 -9.94 16 10 C 0.52 8.84 7.08 -10.99 -0.08 8.76 16 11 O -0.54 -10.73 15.90 5.56 0.09 -10.64 16 12 C 0.07 1.28 3.21 -68.86 -0.22 1.06 16 13 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 14 N -0.83 -14.64 8.93 -5.66 -0.05 -14.69 16 15 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 16 C 0.02 0.59 4.74 -27.88 -0.13 0.45 16 17 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 6.84 -51.93 -0.36 0.17 16 29 H 0.06 0.59 7.80 -51.93 -0.40 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 32 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.40 4.70 5.80 -40.82 -0.24 4.46 16 38 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 39 H 0.35 6.18 8.58 -39.29 -0.34 5.84 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -30.77 346.11 -8.27 -39.04 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.78 Total: 10.97 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.22 Total: -10.90 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.45 Total: -49.96 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.77 -8.27 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.859 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds