Wall clock time and date at job start Mon Mar 30 2020 01:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.05492 * 2 1 4 4 C 1.54266 * 110.03079 * 121.41416 * 2 1 3 5 5 C 1.54894 * 104.31305 * 95.60642 * 4 2 1 6 6 C 1.55238 * 102.58338 * 37.93170 * 5 4 2 7 7 C 1.53869 * 110.02962 * 238.58044 * 2 1 3 8 8 H 1.08995 * 110.04023 * 0.05001 * 7 2 1 9 9 N 1.46506 * 110.02971 * 121.43285 * 7 2 1 10 10 C 1.34780 * 119.99919 * 204.99404 * 9 7 2 11 11 O 1.21276 * 119.99834 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99769 * 179.97438 * 10 9 7 13 13 H 1.08996 * 109.47453 * 320.00760 * 12 10 9 14 14 N 1.46900 * 109.47278 * 200.00251 * 12 10 9 15 15 C 1.53002 * 109.47070 * 80.00852 * 12 10 9 16 16 C 1.52998 * 109.47418 * 184.99971 * 15 12 10 17 17 C 1.50704 * 109.47029 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00331 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99822 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99945 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47436 * 89.99957 * 21 19 17 23 23 H 1.48503 * 109.46945 * 210.00178 * 21 19 17 24 24 H 1.48505 * 109.47188 * 329.99620 * 21 19 17 25 25 H 1.08999 * 109.47517 * 300.04046 * 1 2 3 26 26 H 1.08997 * 109.47176 * 60.03965 * 1 2 3 27 27 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46711 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46911 * 299.96232 * 3 2 1 30 30 H 1.08994 * 109.47252 * 59.95945 * 3 2 1 31 31 H 1.09002 * 110.48629 * 214.35395 * 4 2 1 32 32 H 1.08998 * 110.48744 * 336.86299 * 4 2 1 33 33 H 1.08996 * 110.75388 * 156.31523 * 5 4 2 34 34 H 1.08993 * 110.76071 * 279.69749 * 5 4 2 35 35 H 1.09005 * 110.46917 * 203.39204 * 6 5 4 36 36 H 1.09007 * 110.58541 * 80.83124 * 6 5 4 37 37 H 0.97000 * 120.00151 * 24.99743 * 9 7 2 38 38 H 1.00901 * 111.00305 * 176.04903 * 14 12 10 39 39 H 1.00903 * 111.00317 * 300.00717 * 14 12 10 40 40 H 1.09004 * 109.46860 * 305.00185 * 15 12 10 41 41 H 1.09004 * 109.47027 * 64.99188 * 15 12 10 42 42 H 1.09006 * 109.46607 * 299.99635 * 16 15 12 43 43 H 1.08992 * 109.47230 * 59.99482 * 16 15 12 44 44 H 0.97001 * 119.99929 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3273 -2.1915 0.7225 6 6 2.8874 -1.9407 -0.7034 7 6 2.0570 -0.7536 -1.2337 8 1 1.2229 -1.1186 -1.8329 9 7 2.9033 0.1310 -2.0384 10 6 3.0601 -0.1021 -3.3566 11 8 2.5003 -1.0439 -3.8766 12 6 3.9301 0.8082 -4.1845 13 1 3.7735 1.8414 -3.8744 14 7 3.5787 0.6642 -5.6035 15 6 5.3993 0.4322 -3.9823 16 6 6.2886 1.4329 -4.7230 17 6 7.7358 1.0627 -4.5233 18 1 7.9953 0.1998 -3.9280 19 6 8.7284 1.8251 -5.1015 20 7 8.4123 2.8751 -5.8278 21 14 10.5221 1.3660 -4.8546 22 1 10.9491 0.4395 -5.9336 23 1 11.3575 2.5931 -4.8965 24 1 10.6860 0.7006 -3.5371 25 1 -0.3634 0.5144 0.8896 26 1 -0.3633 0.5132 -0.8903 27 1 -0.3634 -1.0277 0.0005 28 1 3.1446 1.4261 0.0005 29 1 1.6971 1.9545 -0.8903 30 1 1.6961 1.9550 0.8896 31 1 2.9811 -0.3000 1.5967 32 1 1.3070 -0.7675 2.0264 33 1 3.0658 -2.6936 1.3475 34 1 1.4020 -2.7658 0.6787 35 1 2.7401 -2.8198 -1.3309 36 1 3.9443 -1.6775 -0.6593 37 1 3.3508 0.8845 -1.6225 38 1 4.1033 1.3109 -6.1734 39 1 3.7154 -0.2857 -5.9153 40 1 5.6367 0.4531 -2.9186 41 1 5.5752 -0.5697 -4.3740 42 1 6.0512 1.4118 -5.7867 43 1 6.1127 2.4346 -4.3313 44 1 9.1107 3.4117 -6.2342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:06 Heat of formation + Delta-G solvation = -87.987378 kcal Electronic energy + Delta-G solvation = -21274.030864 eV Core-core repulsion = 18223.918949 eV Total energy + Delta-G solvation = -3050.111915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43670 -39.63550 -37.03164 -34.85209 -34.73838 -33.15426 -31.69208 -29.31609 -28.37199 -27.66666 -25.84775 -24.89312 -22.49250 -21.76645 -21.00026 -19.80091 -18.84375 -18.13131 -17.28829 -16.58351 -16.31422 -16.02536 -15.91110 -15.62293 -15.28357 -14.76662 -14.56516 -14.40793 -14.11552 -13.89574 -13.68356 -13.45518 -13.15350 -12.96630 -12.91527 -12.66843 -12.52529 -12.40842 -11.97602 -11.83252 -11.81633 -11.70180 -11.55113 -11.43279 -11.34951 -11.31088 -10.71353 -10.56604 -9.99978 -9.65100 -8.21908 -6.32386 1.39414 1.39914 1.50558 1.63602 2.18629 2.39787 3.11767 3.44696 3.64354 3.75329 3.81357 3.88773 4.11558 4.23842 4.32134 4.36288 4.37926 4.42004 4.52429 4.64980 4.74451 4.81106 4.82947 4.86254 4.98533 4.98978 5.04259 5.07405 5.15130 5.19414 5.30611 5.36600 5.39373 5.45574 5.50501 5.62340 5.65223 5.79807 6.06601 6.20617 6.46614 6.56517 6.82812 7.27081 7.36780 8.88905 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.004064 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.267819 B = 6887.597806 C = 7333.251647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.149 4.149 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.138 4.138 7 C 0.145 3.855 8 H 0.069 0.931 9 N -0.714 5.714 10 C 0.524 3.476 11 O -0.574 6.574 12 C 0.080 3.920 13 H 0.107 0.893 14 N -0.830 5.830 15 C -0.119 4.119 16 C 0.030 3.970 17 C -0.545 4.545 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.411 0.589 38 H 0.352 0.648 39 H 0.343 0.657 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.872 -4.752 15.791 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.072 4.072 3 C -0.206 4.206 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.177 4.177 7 C 0.040 3.960 8 H 0.088 0.912 9 N -0.369 5.369 10 C 0.311 3.689 11 O -0.453 6.453 12 C -0.035 4.035 13 H 0.125 0.875 14 N -0.361 5.361 15 C -0.159 4.159 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.072 0.928 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.206 1.206 24 H -0.190 1.190 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.251 0.749 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.949 -5.041 15.548 22.150 hybrid contribution 2.327 -0.033 -0.490 2.378 sum -12.622 -5.074 15.058 20.293 Atomic orbital electron populations 1.21881 0.93004 1.02200 1.02229 1.21399 0.96611 0.95680 0.93480 1.21935 1.00940 0.94859 1.02879 1.22485 1.01681 0.94363 0.96203 1.22493 1.01268 0.97504 0.94171 1.22843 0.99670 0.97481 0.97697 1.21774 0.92607 0.89931 0.91652 0.91234 1.46351 1.50195 1.32575 1.07773 1.20747 0.80374 0.84831 0.82945 1.90603 1.49619 1.32313 1.72731 1.21416 0.92299 0.99547 0.90273 0.87478 1.58756 1.63920 1.11663 1.01746 1.22116 0.93154 0.99305 1.01334 1.18969 0.93324 0.93730 0.94686 1.21610 0.92914 1.12058 1.31733 0.92772 1.25858 1.03740 0.94869 0.94763 1.70064 1.34543 1.17830 1.34200 0.85541 0.79437 0.77794 0.78850 1.20140 1.20587 1.18957 0.90621 0.93560 0.92223 0.92106 0.92680 0.90393 0.90897 0.89581 0.90416 0.90714 0.93002 0.91909 0.74878 0.83289 0.84392 0.91719 0.93868 0.97951 0.97900 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.15 71.98 0.59 -1.40 16 2 C -0.07 -1.16 0.94 -51.46 -0.05 -1.20 16 3 C -0.15 -2.25 7.05 71.98 0.51 -1.74 16 4 C -0.11 -1.48 5.89 31.67 0.19 -1.29 16 5 C -0.12 -1.81 6.94 32.01 0.22 -1.59 16 6 C -0.14 -3.09 6.54 31.79 0.21 -2.88 16 7 C 0.15 3.35 2.88 45.71 0.13 3.48 16 8 H 0.07 1.92 7.09 -2.39 -0.02 1.90 16 9 N -0.71 -18.56 4.49 -439.11 -1.97 -20.53 16 10 C 0.52 17.65 7.08 87.66 0.62 18.27 16 11 O -0.57 -23.08 15.90 -3.02 -0.05 -23.13 16 12 C 0.08 2.76 3.21 44.17 0.14 2.90 16 13 H 0.11 3.42 8.14 -2.39 -0.02 3.41 16 14 N -0.83 -29.51 8.93 -171.81 -1.54 -31.04 16 15 C -0.12 -4.73 4.78 30.59 0.15 -4.59 16 16 C 0.03 1.49 4.74 29.85 0.14 1.63 16 17 C -0.55 -30.07 9.11 25.60 0.23 -29.83 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.35 5.46 84.65 0.46 0.81 16 20 N -0.93 -54.39 13.29 21.45 0.28 -54.10 16 21 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.92 6.84 -2.39 -0.02 0.90 16 29 H 0.05 0.93 7.80 -2.39 -0.02 0.91 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.96 7.85 -2.39 -0.02 0.94 16 32 H 0.09 0.89 7.84 -2.39 -0.02 0.87 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.06 1.51 8.05 -2.38 -0.02 1.49 16 37 H 0.41 9.13 5.80 -92.71 -0.54 8.59 16 38 H 0.35 12.61 7.55 -89.69 -0.68 11.93 16 39 H 0.34 12.50 8.58 -89.69 -0.77 11.73 16 40 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.00 0.11 6.87 -2.38 -0.02 0.10 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -65.55 346.11 1.30 -64.25 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -1.00 Total: 36.58 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.54 Total: -17.44 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.22 Total: -105.68 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.55 1.30 -64.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.736 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds